rna9215, rna9215 (mRNA) Nannochloropsis gaditana

Overview
Namerna9215
Unique Namerna9215
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length498
Alignment locationKK037252.1:121352..122851 +

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Properties
Property NameValue
ProductBRCT domain protein
Orig transcript idgnl|cribi|Naga_100019g55.482.mrna
Orig protein idgnl|cribi|Naga_100019g55.482
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:121352..122851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100019g55gene8939Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9215rna9215-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21460.1cds9185Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9215 ID=rna9215|Name=rna9215|organism=Nannochloropsis gaditana|type=mRNA|length=498bp
ATGAGCACCCAACGATTCGACCACCTTGTTGAGGAAAACGAGACGGCAGA
GCGGAAAACTGTGCCTGCGGTCGATGAATGCGTGATCAGTGCCCGTCTTA
CTTTCTCCGACATGCCAGGGCAGCGGAAGGGTGTGCACTTGCTGGAATCC
GGCGAGAATACGATCGGTCGCGCAGCAGGTAACAAGGTCATTTTGGACCA
TCCTAGTATTTCAGAGCGCCACGCCATAATAAGTGTGGTAGATGACTGCA
TGTTCATAAAGGACTGCGGCTCCACGAACCGGACCTGGCTCTGGGACGCA
GCCCGCGGGACCTTCCAGCCCCGATCATTGGCGAGACTCAGGGACGGCGA
CTACCTCCGGCTGGGGACCCTCGAAGCCCAGCTTGCACTTCAATCCACTG
CCAAGGAGGAGCAGCGGGCAGTTGAGGGGGAGGCGCGCCTCCGGGAAGGG
AGGGAACGCGCAGCTGCAGAGCCCGAGGCGGTCCCCCACGCGCCGTGA
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protein sequence of rna9215

>rna9215-protein ID=rna9215-protein|Name=rna9215|organism=Nannochloropsis gaditana|type=polypeptide|length=476bp
MVSAESLPASRRLSFKARSSEAVPRSQCDSFFASSPTQKRMIDHADPSTE
ELPRRRRYKPSSPPASSVAENDRNVEACMTKELAGRQVDVTSGRRFGGEQ
ETNAMNAPDIRRVAVSCVEPNAEMKRQLRALGLSLVDDLRQADLLIAGDG
ATGVAARRTAKVMSALSLGLPLVDYSWLRNSAKLSVAQDPRGHPPSYKGP
KTCADEMTDDRTTVQPSASVKAPFLEGWAVLAAFKSFGLNGVPSKGDLRL
IVECAGGIFFDKPKDLESGRRKKTRRSSLLILSNECSMAHKTLGIEVRRL
AVEQKAAGMGVYYLEALLAGAMKQRLDLFDHVLWQWDENDEEEQTDGDEK
ISCRLRGKENKAVSARASSKKNDHNSLNVPRGKFDVKKGGKKTDSTMEYR
GRSRISPHVSLLTPQQNDRLRRLVEEQLVEWNCRPRKNAVEGGNRTLWKK
RAMNYTYIRICRKRCHDRLPMQSNNS
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mRNA from alignment at KK037252.1:121352..122851+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9215 ID=rna9215|Name=rna9215|organism=Nannochloropsis gaditana|type=mRNA|length=1500bp|location=Sequence derived from alignment at KK037252.1:121352..122851+ (Nannochloropsis gaditana)
ATGGTTTCCGCCGAGTCTTTGCCTGCCTCGCGCAGGCTGTCTTTCAAAGC
CCGAAGTAGTGAGGCGGTCCCAAGGAGCCAATGCGACTCCTTTTTTGCCT
CGTCTCCCACTCAAAAGCGAATGATCGACCATGCGGATCCTTCAACGGAG
GAGCTGCCGCGGCGCCGGAGGTATAAGCCCTCATCGCCCCCTGCTTCTTC
CGTGGCAGAGAACGACCGAAATGTAGAAGCTTGCATGACCAAAGAATTGG
CTGGGCGTCAAGTCGATGTGACTTCAGGCAGGCGTTTCGGAGGGGAACAG
GAGACCAACGCCATGAATGCGCCGGATATTAGAAGGGTTGCAGTATCCTG
TGTCGAGCCCAATGCGGAGATGAAGCGGCAGCTGAGAGCGTTGGGACTGT
CGCTCGTGGACGACCTGCGGCAAGCAGACCTCCTTATTGCGGGAGATGGG
GCCACAGGAGTGGCAGCGCGGCGTACTGCCAAGGTGATGAGTGCCCTGTC
GCTGGGCCTTCCTCTGGTTGACTACTCCTGGTTGCGAAATTCAGCCAAAC
TAAGCGTTGCACAGGACCCTCGCGGCCACCCTCCGAGCTATAAGGGCCCA
AAAACGTGCGCTGACGAGATGACTGATGATAGGACCACGGTGCagccttc
cgcctccgtgaAGGCCCCATTCTTGGAAGGCTGGGCTGTCCTGGCTGCCT
TTAAAAGCTTCGGGCTGAATGGCGTGCCTTCAAAGGGGGACCTGCGCCTC
ATCGTAGAGTGCGCCGGCGGCATTTTTTTCGACAAACCTAAGGACTTGGA
GTCAGGACGAAGAAAGAAGACCAGAAGAAGCAGTCTCTTGATTCTTTCGA
ATGAATGCAGCATGGCGCATAAAACGCTTGGAATCGAGGTCAGGCGGCTG
GCAGTAGAGCAGAAGGCGGCGGGTATGGGGGTGTACTACCTAGAAGCCCT
TTTGGCAGGCGCCATGAAGCAAAGACTTGATTTGTTTGACCATGTGCTCT
GGCAGTGGGACGAaaacgacgaggaagagcaaaCAGACGGAGACGAGAAA
ATTTCTTGCCGTTTACGTGGAAAGGAAAACAAAGCTGTGTCGGCGAGAGC
ATCGTCAAAGAAAAATGATCACAATTCGCTTAACGTTCCACGAGGGAAAT
TTGATgtcaaaaaaggagggaaaaagacagaCTCGACTATGGAATATCGT
GGACGGTCACGAAGTTTCAAAAAAGGGACAAGGTAGCAGGCAGGTGTGCG
GGATAGATTTCGACCGACTCGCGCAGTTTAAGTATCCCCGCACGTCTCGC
TACTGACACCACAACAAAATGATCGGCTGCGCAGACTTGTGGAAGAACAG
CTTGTTGAATGGAATTGTCGGCCCCGAAAAAATGCTGTCGAAGGGGGAAA
CCGAACACTTTGGAAGAAACGCGCGATGAACTACACATATATCCGCATCT
GCCGCAAGCGGTGTCATGACAGGCTACCCATGCAATCAAATAATAGCTAG
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Coding sequence (CDS) from alignment at KK037252.1:121352..122851+

>rna9215 ID=rna9215|Name=rna9215|organism=Nannochloropsis gaditana|type=CDS|length=2862bp|location=Sequence derived from alignment at KK037252.1:121352..122851+ (Nannochloropsis gaditana)
ATGGTTTCCGCCGAGTCTTTGCCTGCCTCGCGCAGGCTGTCTTTCAAAGC
CCGAAGTAGTGAGGCGGTCCCAAGGAGCCAATGCGACTCCTTTTTTGCCT
CGTCTCCCACTCAAAAGCGAATGATCGACCATGCGGATCCTTCAACGGAG
GAGCTGCCGCGGCGCCGGAGGTATAAGCCCTCATCGCCCCCTGCTTCTTC
CGTGGCAGAGAACGACCGAAATGTAGAAGCTTGCATGACCAAAGAATTGG
CTGGGCGTCAAGTCGATGTGACTTCAGGCAGGCGTTTCGGAGGGGAACAG
GAGACCAACGCCATGAATGCGCCGGATATTAGAAGGGTTGCAGTATCCTG
TGTCGAGCCCAATGCGGAGATGAAGCGGCAGCTGAGAGCGTTGGGACTGT
CGCTCGTGGACGACCTGCGGCAAGCAGACCTCCTTATTGCGGGAGATGGG
GCCACAGGAGTGGCAGCGCGGCGTACTGCCAAGGTGATGAGTGCCCTGTC
GCTGGGCCTTCCTCTGGTTGACTACTCCTGGTTGCGAAATTCAGCCAAAC
TAAGCGTTGCACAGGACCCTCGCGGCCACCCTCCGAGCTATAAGGGCCCA
AAAACGTGCGCTGACGAGATGACTGATGATAGGACCACGGTGCagccttc
cgcctccgtgaAGGCCCCATTCTTGGAAGGCTGGGCTGTCCTGGCTGCCT
TTAAAAGCTTCGGGCTGAATGGCGTGCCTTCAAAGGGGGACCTGCGCCTC
ATCGTAGAGTGCGCCGGCGGCATTTTTTTCGACAAACCTAAGGACTTGGA
GTCAGGACGAAGAAAGAAGACCAGAAGAAGCAGTCTCTTGATTCTTTCGA
ATGAATGCAGCATGGCGCATAAAACGCTTGGAATCGAGGTCAGGCGGCTG
GCAGTAGAGCAGAAGGCGGCGGGTATGGGGGTGTACTACCTAGAAGCCCT
TTTGGCAGGCGCCATGAAGCAAAGACTTGATTTGTTTGACCATGTGCTCT
GGCAGTGGGACGAaaacgacgaggaagagcaaaCAGACGGAGACGAGAAA
ATTTCTTGCCGTTTACGTGGAAAGGAAAACAAAGCTGTGTCGGCGAGAGC
ATCGTCAAAGAAAAATGATCACAATTCGCTTAACGTTCCACGAGGGAAAT
TTGATgtcaaaaaaggagggaaaaagacagaCTCGACTATGGAATATCGT
GGACGGTCACGAATATCCCCGCACGTCTCGCTACTGACACCACAACAAAA
TGATCGGCTGCGCAGACTTGTGGAAGAACAGCTTGTTGAATGGAATTGTC
GGCCCCGAAAAAATGCTGTCGAAGGGGGAAACCGAACACTTTGGAAGAAA
CGCGCGATGAACTACACATATATCCGCATCTGCCGCAAGCGGTGTCATGA
CAGGCTACCCATGCAATCAAATAATAGCTAGATGGTTTCCGCCGAGTCTT
TGCCTGCCTCGCGCAGGCTGTCTTTCAAAGCCCGAAGTAGTGAGGCGGTC
CCAAGGAGCCAATGCGACTCCTTTTTTGCCTCGTCTCCCACTCAAAAGCG
AATGATCGACCATGCGGATCCTTCAACGGAGGAGCTGCCGCGGCGCCGGA
GGTATAAGCCCTCATCGCCCCCTGCTTCTTCCGTGGCAGAGAACGACCGA
AATGTAGAAGCTTGCATGACCAAAGAATTGGCTGGGCGTCAAGTCGATGT
GACTTCAGGCAGGCGTTTCGGAGGGGAACAGGAGACCAACGCCATGAATG
CGCCGGATATTAGAAGGGTTGCAGTATCCTGTGTCGAGCCCAATGCGGAG
ATGAAGCGGCAGCTGAGAGCGTTGGGACTGTCGCTCGTGGACGACCTGCG
GCAAGCAGACCTCCTTATTGCGGGAGATGGGGCCACAGGAGTGGCAGCGC
GGCGTACTGCCAAGGTGATGAGTGCCCTGTCGCTGGGCCTTCCTCTGGTT
GACTACTCCTGGTTGCGAAATTCAGCCAAACTAAGCGTTGCACAGGACCC
TCGCGGCCACCCTCCGAGCTATAAGGGCCCAAAAACGTGCGCTGACGAGA
TGACTGATGATAGGACCACGGTGCagccttccgcctccgtgaAGGCCCCA
TTCTTGGAAGGCTGGGCTGTCCTGGCTGCCTTTAAAAGCTTCGGGCTGAA
TGGCGTGCCTTCAAAGGGGGACCTGCGCCTCATCGTAGAGTGCGCCGGCG
GCATTTTTTTCGACAAACCTAAGGACTTGGAGTCAGGACGAAGAAAGAAG
ACCAGAAGAAGCAGTCTCTTGATTCTTTCGAATGAATGCAGCATGGCGCA
TAAAACGCTTGGAATCGAGGTCAGGCGGCTGGCAGTAGAGCAGAAGGCGG
CGGGTATGGGGGTGTACTACCTAGAAGCCCTTTTGGCAGGCGCCATGAAG
CAAAGACTTGATTTGTTTGACCATGTGCTCTGGCAGTGGGACGAaaacga
cgaggaagagcaaaCAGACGGAGACGAGAAAATTTCTTGCCGTTTACGTG
GAAAGGAAAACAAAGCTGTGTCGGCGAGAGCATCGTCAAAGAAAAATGAT
CACAATTCGCTTAACGTTCCACGAGGGAAATTTGATgtcaaaaaaggagg
gaaaaagacagaCTCGACTATGGAATATCGTGGACGGTCACGAATATCCC
CGCACGTCTCGCTACTGACACCACAACAAAATGATCGGCTGCGCAGACTT
GTGGAAGAACAGCTTGTTGAATGGAATTGTCGGCCCCGAAAAAATGCTGT
CGAAGGGGGAAACCGAACACTTTGGAAGAAACGCGCGATGAACTACACAT
ATATCCGCATCTGCCGCAAGCGGTGTCATGACAGGCTACCCATGCAATCA
AATAATAGCTAG
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Synonyms
Publications