rna9214, rna9214 (mRNA) Nannochloropsis gaditana

Overview
Namerna9214
Unique Namerna9214
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2139
Alignment locationKK037252.1:118829..119540 +

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Properties
Property NameValue
Productfha domain containing protein
Orig transcript idgnl|cribi|Naga_100019g56.479.mrna
Orig protein idgnl|cribi|Naga_100019g56.479
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:118829..119540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100019g56gene8938Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9214rna9214-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21457.1cds9184Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9214 ID=rna9214|Name=rna9214|organism=Nannochloropsis gaditana|type=mRNA|length=2139bp
CTATGCCTCTCGTAGATGTAGAGATGAAGCTTCCCCCTTCTCTTACAGAG
CTAGACGAGGATGGTAGTCTTTCTGTGACATTCATCAGCCTTGACAAAAC
TGTGGCAAGCGACACCGCAGCGTTCCACCTGGCTACTGCGTTGGAGGAGA
GAGAGCGATCGCGTGGATTGCTTGTACTTCCACTTCCCACTACCAATGAT
GCTGAAAGGCCTGTTTTCGAGCTACTCTGTTTTGGAGGACTCTCTAAATT
ACCCAACGGTATTATTCGAAATGTTGCGACGGAATGTGGCCTTACTCTCG
AGGCGATAACTCGTGGAAGCTTGACCGTCCTGAATGAGAACTACCTCCTC
TTGCTGGGCCAGCGCCTACTCTCGCGCTTTTTAATTGATCAAGGCTGGTG
TCGCATATTCGACGACGTTTATACAAGTCATACTGATCTATTTCCACGCT
ACACTTCCAATTGTTCAGAGAAGCTTGACATGAGAGAGGGAAAACTCGCT
AGGAGAGATTTCGTGGAGGCTGTCAAAGTGGTGGTCCTGCTCAACACGCG
CACGACCAATCCCTGGCGAGAGCATAGTGAAACCGCAAATTGTCAGATAG
GCCTCACCATCTCGCTGGAGCCCATGGTCTTCAAGCGGATCCGTCCACCT
TTCGATGATCTTAAGCTCCTCGCAACACAGCATCATGTGCAGCAGTCGCA
ACGCGGTCGTCTCATGTCGTCACAAAATCAGCAAGATTATGTTCGAGATG
AGGATGGTGTCTACAGCGGCAGAGATGTTTTTCCACCGGACGAAGCCGTT
CTGGAAATGAGGGCAGTCAAGGTGTTGCCAGATCTTACCAAAACGGGCTT
TCTTGTCTCCTTGCCTACGCCGAACATAGAGATCACACCCTTAGAGAAGA
TAAATACACAGCACGGCTTTGATGCCGAAGTGCCCCGGGATGAGGTCGCC
TTGCGTCGCTTCTGGCGGCTCACTCACGGGATCGAGCTGCCTGCCGAGCC
TCTCACTTACGTCCGTGTCATTTTCGAAGGCCAGGGCCGTACATCCACGA
TCTACCCGACATTGTGTCTTGTTTCTCAATTCGTGCATAATTACTCTCGT
ACGACCCAGGCTTACTCTCAACTCTGCCAGACCTTTCTACGCCTCCTGCG
CGACTTTCCCAGCGTCCTCCGGCTTTCAACTGACTTTTCGTCCTCCTCTG
GCGGGCCCGTCGGGAGGCGTCTGTCGTCGCCAGAGAAATCCGGACTTAGC
GCCTTTAAAACGGCTCGGCAGCTCCGGGACAGTATAAAAGAAGGGAGACC
CCACGTTGGAGACAATGCAAGGCTGCAGAAATATGTCGCTTTAGCCACAC
AAGCAAGTAAAAAACCATCCACAAACCCATTTTCATCAGTTTTACCATCT
TTCTCGTCGTCTTCAAATCCCTCATCACCCCTGCTTCCCCATGCCATTGG
CTCTCAATCAATTTGCTCCTCCAAAAGGACAGCAAAAGCAGCGAGAGCCC
TCTCAGATCCTCCTGAAACAATGAACTCCGTGAAGGTCAGTCCTCCACCA
ACTTTGAAATTCTCTTCCCGTACCGCAGATGTCCACTCCTCTGAGTCCAG
TGCAGCTTTTCTTACTTCTTCTTCGTCACCAGATGGCGTGTCCTTTGAGT
CCGGTGCAGCTTTTCTTACTTCTTCTTTGTCACTAGATGGCGTGTCCTCT
GAGTCCAGTGCAGCTTTTCTTACTTCTTCTTCGTCACCAGATGGCGTGGA
CTGCGAACATGTCTCTGACGCGACTAGCACGTGTACATCCGCGACGTCCG
CGCCATCAAAAATGATTCCATCACGTCATCAGCCCCCTCGCTCGGATTCA
AAGACTGACTGGGTAGATGAGGCGAAAAAATCGAATGGTTTCCAAGTTTC
AAAGACGACACATGCGGAACCTTTATTAGAAAGGAAAGCGATTAGCTCAT
CACTTGCGATGACGGGGAAGAAAAAAGGACATACGGTGCGGGAGATATCT
ATCAAGACCAAATCGCGAGGATATGAAAGTTTGAAAAAGCAAAAGGAACA
GGCGAACAGAAATAATGCCCAAAATCACAAAACGAGGGCGAAAACTTCAA
ATAAAAGACAGTAACTCAGCGGAAAGACAATTAAGCTTC
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protein sequence of rna9214

>rna9214-protein ID=rna9214-protein|Name=rna9214|organism=Nannochloropsis gaditana|type=polypeptide|length=165bp
MSTQRFDHLVEENETAERKTVPAVDECVISARLTFSDMPGQRKGVHLLES
GENTIGRAAGNKVILDHPSISERHAIISVVDDCMFIKDCGSTNRTWLWDA
ARGTFQPRSLARLRDGDYLRLGTLEAQLALQSTAKEEQRAVEGEARLREG
RERAAAEPEAVPHAP
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mRNA from alignment at KK037252.1:118829..119540+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9214 ID=rna9214|Name=rna9214|organism=Nannochloropsis gaditana|type=mRNA|length=712bp|location=Sequence derived from alignment at KK037252.1:118829..119540+ (Nannochloropsis gaditana)
ATGAGCACCCAACGATTCGACCACCTTGTTGAGGAAAACGAGACGGCAGA
GCGGAAAACTGTGCCTGCGGTCGATGAATGCGTGATCAGTGCCCGTCTTA
CTTTCTCCGACATGCCAGGGCAGCGGAAGGGTGTGCACTTGCTGGAATCC
GGCGAGAATACGATCGGTGAGTGCACGCTCTGCGCCGATCATACAGAAGC
TTTGATGAGGGCATCGCAAACGGTGGTTATTGTAACAGGCAAGAGAAGAT
TTTCGAGACATTCTTCACCCCACTCCTAATGTAATGTTTTTATCCTGCGC
TTCCCTGACCACCTCACAGGTCGCGCAGCAGGTAACAAGGTCATTTTGGA
CCATCCTAGTATTTCAGAGCGCCACGCCATAATAAGTGTGGTAGATGACT
GCATGTTCATAAAGGACTGCGGCTCCACGAACCGGACCTGGCTCTGGGAC
GCAGCCCGCGGGACCTTCCAGCCCCGATCATTGGCGAGACTCAGGGACGG
CGACTACCTCCGGCTGGGGACCCTCGAAGCCCAGCTTGCACTTCAATCCa
ctgccaaggaggagcagcgggcagttgagggggaggcgcgcctccgggaa
gggagggaacgcgCAGCTGCAGAGCCCGAGGCGGTCCCCCACGCGTCGAG
ACcgtcccgcgcctccccgcGGTTCTCAtcagcctcctctctctccctca
cccaGGCCGTGA
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Coding sequence (CDS) from alignment at KK037252.1:118829..119540+

>rna9214 ID=rna9214|Name=rna9214|organism=Nannochloropsis gaditana|type=CDS|length=1494bp|location=Sequence derived from alignment at KK037252.1:118829..119540+ (Nannochloropsis gaditana)
ATGAGCACCCAACGATTCGACCACCTTGTTGAGGAAAACGAGACGGCAGA
GCGGAAAACTGTGCCTGCGGTCGATGAATGCGTGATCAGTGCCCGTCTTA
CTTTCTCCGACATGCCAGGGCAGCGGAAGGGTGTGCACTTGCTGGAATCC
GGCGAGAATACGATCGGTCGCGCAGCAGGTAACAAGGTCATTTTGGACCA
TCCTAGTATTTCAGAGCGCCACGCCATAATAAGTGTGGTAGATGACTGCA
TGTTCATAAAGGACTGCGGCTCCACGAACCGGACCTGGCTCTGGGACGCA
GCCCGCGGGACCTTCCAGCCCCGATCATTGGCGAGACTCAGGGACGGCGA
CTACCTCCGGCTGGGGACCCTCGAAGCCCAGCTTGCACTTCAATCCactg
ccaaggaggagcagcgggcagttgagggggaggcgcgcctccgggaaggg
agggaacgcgCAGCTGCAGAGCCCGAGGCGGTCCCCCACGCGCCGTGAAT
GAGCACCCAACGATTCGACCACCTTGTTGAGGAAAACGAGACGGCAGAGC
GGAAAACTGTGCCTGCGGTCGATGAATGCGTGATCAGTGCCCGTCTTACT
TTCTCCGACATGCCAGGGCAGCGGAAGGGTGTGCACTTGCTGGAATCCGG
CGAGAATACGATCGGTCGCGCAGCAGGTAACAAGGTCATTTTGGACCATC
CTAGTATTTCAGAGCGCCACGCCATAATAAGTGTGGTAGATGACTGCATG
TTCATAAAGGACTGCGGCTCCACGAACCGGACCTGGCTCTGGGACGCAGC
CCGCGGGACCTTCCAGCCCCGATCATTGGCGAGACTCAGGGACGGCGACT
ACCTCCGGCTGGGGACCCTCGAAGCCCAGCTTGCACTTCAATCCactgcc
aaggaggagcagcgggcagttgagggggaggcgcgcctccgggaagggag
ggaacgcgCAGCTGCAGAGCCCGAGGCGGTCCCCCACGCGCCGTGAATGA
GCACCCAACGATTCGACCACCTTGTTGAGGAAAACGAGACGGCAGAGCGG
AAAACTGTGCCTGCGGTCGATGAATGCGTGATCAGTGCCCGTCTTACTTT
CTCCGACATGCCAGGGCAGCGGAAGGGTGTGCACTTGCTGGAATCCGGCG
AGAATACGATCGGTCGCGCAGCAGGTAACAAGGTCATTTTGGACCATCCT
AGTATTTCAGAGCGCCACGCCATAATAAGTGTGGTAGATGACTGCATGTT
CATAAAGGACTGCGGCTCCACGAACCGGACCTGGCTCTGGGACGCAGCCC
GCGGGACCTTCCAGCCCCGATCATTGGCGAGACTCAGGGACGGCGACTAC
CTCCGGCTGGGGACCCTCGAAGCCCAGCTTGCACTTCAATCCactgccaa
ggaggagcagcgggcagttgagggggaggcgcgcctccgggaagggaggg
aacgcgCAGCTGCAGAGCCCGAGGCGGTCCCCCACGCGCCGTGA
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Synonyms
Publications