EWM21457.1, cds9184 (CDS) Nannochloropsis gaditana

Overview
NameEWM21457.1
Unique Namecds9184
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:118829..118994 +
Alignment locationKK037252.1:119148..119472 +
Alignment locationKK037252.1:119534..119540 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21457.1
Productfha domain containing protein
Orig transcript idgnl|cribi|Naga_100019g56.479.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:118829..118994 +
KK037252.1supercontigKK037252.1:119148..119472 +
KK037252.1supercontigKK037252.1:119534..119540 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR008984SMAD_FHA_domain
IPR000253FHA_dom
Homology
BLAST of EWM21457.1 vs. NCBI_GenBank
Match: gi|585101687|gb|EWM21457.1| (fha domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 339.732 bits (870), Expect = 3.584e-118
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query:    1 MSTQRFDHLVEENETAERKTVPAVDECVISARLTFSDMPGQRKGVHLLESGENTIGRAAGNKVILDHPSISERHAIISVVDDCMFIKDCGSTNRTWLWDAARGTFQPRSLARLRDGDYLRLGTLEAQLALQSTAKEEQRAVEGEARLREGRERAAAEPEAVPHAP 165
            MSTQRFDHLVEENETAERKTVPAVDECVISARLTFSDMPGQRKGVHLLESGENTIGRAAGNKVILDHPSISERHAIISVVDDCMFIKDCGSTNRTWLWDAARGTFQPRSLARLRDGDYLRLGTLEAQLALQSTAKEEQRAVEGEARLREGRERAAAEPEAVPHAP
Sbjct:    1 MSTQRFDHLVEENETAERKTVPAVDECVISARLTFSDMPGQRKGVHLLESGENTIGRAAGNKVILDHPSISERHAIISVVDDCMFIKDCGSTNRTWLWDAARGTFQPRSLARLRDGDYLRLGTLEAQLALQSTAKEEQRAVEGEARLREGRERAAAEPEAVPHAP 165          
BLAST of EWM21457.1 vs. NCBI_GenBank
Match: gi|1019022256|ref|XP_016080823.1| (PREDICTED: LOW QUALITY PROTEIN: mediator of DNA damage checkpoint protein 1 [Ornithorhynchus anatinus])

HSP 1 Score: 63.929 bits (154), Expect = 6.920e-9
Identity = 41/95 (43.16%), Postives = 49/95 (51.58%), Query Frame = 0
Query:   35 FSDMPGQRKGVHLLESGENTIGRAAGNKVILDHPSISERHAIISVVDDCM--FIKDCGSTNRTWLWDAARGTFQPRSLARLRDGDYLRLGTLEAQ 127
            FS + G  K   LL  GEN +GR AG  V L  PSIS+RHA+I      +   ++DCGS NRT L   +    QP    RLRD D L    L  Q
Sbjct:   70 FSSVHGPEKDF-LLSPGENVVGRVAGCAVTLPFPSISKRHAVIEAPGRGLPAVLRDCGSLNRTRLLRPST-LLQPGRAYRLRDRDLLLFADLPCQ 162          
BLAST of EWM21457.1 vs. NCBI_GenBank
Match: gi|942704299|ref|WP_055407654.1| (hypothetical protein [Pyrodictium delaneyi] >gi|1207199838|gb|OWJ54435.1| hypothetical protein Pdsh_08200 [Pyrodictium delaneyi])

HSP 1 Score: 60.4622 bits (145), Expect = 3.432e-8
Identity = 30/95 (31.58%), Postives = 56/95 (58.95%), Query Frame = 0
Query:   28 VISARLTFSDMPGQRKGVHLLESGENTIGRAAGNKVILDHPSISERHAIISVVDDCMFIKDCGSTNRTWLWDAARGTFQPRSLARLRDGDYLRLG 122
            VI++ +T  ++ G +  +     G  ++GR+  N +++  PS+S RHA++ + DD + ++D GSTN T+++D     F+    A L+ G  +RLG
Sbjct:  112 VINSPVT--ELMGMKIPLQFEVYGRISLGRSLENVIVVPDPSVSRRHALVYIEDDKVVLEDLGSTNGTYIYDPGEAVFRRVDRAVLKPGMLVRLG 204          
BLAST of EWM21457.1 vs. NCBI_GenBank
Match: gi|926368848|ref|WP_053698675.1| (FHA domain-containing protein [Streptomyces sp. NRRL F-5755])

HSP 1 Score: 60.8474 bits (146), Expect = 5.818e-8
Identity = 40/104 (38.46%), Postives = 55/104 (52.88%), Query Frame = 0
Query:   25 DECVISARLTFSDMPGQRKGVHLLESGENTIGRAAGNKVILDHPSISERHAIISVVDDCMFIKDCGSTNRTWLWDAAR--GTFQPRSLARLRDGDYLRLGTLEA 126
            D C    RL F+      + VH   +   T+GRA    + LD P +S  HA++   D    +KD GSTN TWL ++ R  GT+      RLRDGD +R G++EA
Sbjct:    9 DSC---PRLIFTGTASVPRTVHAFRNRHLTVGRAPECDLRLDDPQVSNVHAVLRRSDGATSLKDKGSTNGTWL-NSVRIDGTYH-----RLRDGDVIRFGSVEA 103          
BLAST of EWM21457.1 vs. NCBI_GenBank
Match: gi|1184237485|gb|OSC74079.1| (hypothetical protein B5180_14800 [Streptomyces sp. BF-3])

HSP 1 Score: 61.2326 bits (147), Expect = 6.307e-8
Identity = 56/143 (39.16%), Postives = 68/143 (47.55%), Query Frame = 0
Query:   21 VPAVDEC---VISARLTFSDMPGQRKGVHLLESGENTIGRAAGNKVILDHPSISERHAIISVVDDC-MFIKDCGSTNRTWLWDAARGTFQPRSLARLRDGDYLRLGTLEAQLALQSTAKEEQRAVEGEARLREGR-ERAAAEP 158
            VP  DE    V+ A+L     P    GVHLL  G+  IGR+A   V LD P +S  H  +SV DD  + + D GSTN T L D  +   +P    RL  G  LRLG    +L   S       A +GE  LR  R E  AA P
Sbjct:   86 VPGDDEATDDVVPAQLHVVAGP-DAGGVHLLHGGQIRIGRSADADVPLDDPDVSRLHCAVSVSDDGRVSVADLGSTNGTSL-DGVKVGERP---VRLTPGALLRLGESTLRLTSGSRPTTLPTAPDGEGHLRVTRAETGAAAP 223          
BLAST of EWM21457.1 vs. NCBI_GenBank
Match: gi|941938407|gb|ALL00385.1| (hypothetical protein Pyrde_0335 [Pyrodictium delaneyi])

HSP 1 Score: 60.077 bits (144), Expect = 7.356e-8
Identity = 30/95 (31.58%), Postives = 56/95 (58.95%), Query Frame = 0
Query:   28 VISARLTFSDMPGQRKGVHLLESGENTIGRAAGNKVILDHPSISERHAIISVVDDCMFIKDCGSTNRTWLWDAARGTFQPRSLARLRDGDYLRLG 122
            VI++ +T  ++ G +  +     G  ++GR+  N +++  PS+S RHA++ + DD + ++D GSTN T+++D     F+    A L+ G  +RLG
Sbjct:  133 VINSPVT--ELMGMKIPLQFEVYGRISLGRSLENVIVVPDPSVSRRHALVYIEDDKVVLEDLGSTNGTYIYDPGEAVFRRVDRAVLKPGMLVRLG 225          
BLAST of EWM21457.1 vs. NCBI_GenBank
Match: gi|1113192450|gb|OJU62727.1| (hypothetical protein BGO01_09970 [Armatimonadetes bacterium 55-13])

HSP 1 Score: 60.077 bits (144), Expect = 1.097e-7
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 0
Query:    9 LVEENETAERKTVPAVDECVISARLTFSDMPGQRKGVHLLESGENTIGRAAGNKVILDHPSISERHAIISVVDDCMFIKDCGSTNRTWLWDAARGTFQPRSLARLRDGDYLRLGTLEAQL 128
            ++  N+TA   T P V+  V  A L   D        + L++G N+ GR + N V +  P +S +H +I + D+  F+ D GSTN T L DA      P     +   D +RLG+LE ++
Sbjct:  187 VISSNKTAAIATPPKVE--VAPATLVGPDKE------YPLKAGLNSFGRKSDNDVSITDPYVSGKHGVIEITDNGYFLTDIGSTNGTMLNDAK---LSPNMRTAITAEDVIRLGSLELRI 295          
BLAST of EWM21457.1 vs. NCBI_GenBank
Match: gi|1051891869|emb|SCD77778.1| (FtsK/SpoIIIE family protein [Streptomyces sp. DvalAA-43])

HSP 1 Score: 60.4622 bits (145), Expect = 1.275e-7
Identity = 51/132 (38.64%), Postives = 62/132 (46.97%), Query Frame = 0
Query:   21 VPAVDECV---ISARLTFSDMPGQRKGVHLLESGENTIGRAAGNKVILDHPSISERHAIISV-VDDCMFIKDCGSTNRTWLWDAARGTFQPRSLARLRDGDYLRLGTLEAQLALQSTAKEEQRAVEGEARLR 148
            VP  DE V   + ARL     P    GVHLL  G   IGR+A   V LD P +S  H  ++V  D  + + D GSTN T L D A    +P    RL+ G  LRLG     L   + A     A +GE  LR
Sbjct:   86 VPGEDEAVDDAVPARLHVVAGP-DAGGVHLLHGGRIRIGRSADADVPLDDPDVSRLHCAVTVSADGLVSVADLGSTNGT-LLDGAEVRDRP---VRLKPGALLRLGESTLLLTSGAPAPTLATAPDGEGHLR 212          
BLAST of EWM21457.1 vs. NCBI_GenBank
Match: gi|1051878196|emb|SCE61159.1| (Inner membrane component of T3SS domain-containing protein, partial [Streptomyces sp. OspMP-M43])

HSP 1 Score: 59.6918 bits (143), Expect = 1.438e-7
Identity = 53/141 (37.59%), Postives = 64/141 (45.39%), Query Frame = 0
Query:   21 VPAVDECV---ISARLTFSDMPGQRKGVHLLESGENTIGRAAGNKVILDHPSISERHAIISVVDDC-MFIKDCGSTNRTWLWDAARGTFQPRSLARLRDGDYLRLGTLEAQLALQSTAKEEQRAVEGEARLREGRERAAAE 157
            VP  DE     + ARL     P    GVHLL  G+  IGR+A   V LD P +S  H  ++V DD  + + D GSTN T L D      +P    RL  G  LRLG    +L   S       A +GE  LR  R   AA 
Sbjct:  133 VPGDDEATDDPVPARLHVVAGP-DAGGVHLLHGGQIRIGRSADADVPLDDPDVSRLHCAVTVSDDGRVSVVDLGSTNGTSL-DGVEVRERP---VRLAPGALLRLGESALRLTTGSRPATLPTAPDGEGHLRVARTETAAS 268          
BLAST of EWM21457.1 vs. NCBI_GenBank
Match: gi|1087555062|emb|SDK69343.1| (FtsK/SpoIIIE family protein [Streptomyces indicus])

HSP 1 Score: 60.077 bits (144), Expect = 1.495e-7
Identity = 45/108 (41.67%), Postives = 56/108 (51.85%), Query Frame = 0
Query:   44 GVHLLESGENTIGRAAGNKVILDHPSISERHAIISVVDDC-MFIKDCGSTNRTWLWDAARGTFQPRSLARLRDGDYLRLGTLEAQLALQSTAKEE--QRAVEGEARLR 148
            GVHLL  G  TIGR+A   V LD P +S  H  +++ DD  + + D GSTN T L     GT       RL  G  LR+G  E+ L L +TA  E    A +GE  LR
Sbjct:  114 GVHLLHGGRITIGRSADADVPLDDPDVSRLHCAVTLADDGRVTVTDLGSTNGTGL----DGTPVHDRPVRLTPGALLRIG--ESTLRLSTTADPEPLSTAPDGEGHLR 215          
The following BLAST results are available for this feature:
BLAST of EWM21457.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101687|gb|EWM21457.1|3.584e-118100.00fha domain containing protein [Nannochloropsis gad... [more]
gi|1019022256|ref|XP_016080823.1|6.920e-943.16PREDICTED: LOW QUALITY PROTEIN: mediator of DNA da... [more]
gi|942704299|ref|WP_055407654.1|3.432e-831.58hypothetical protein [Pyrodictium delaneyi] >gi|12... [more]
gi|926368848|ref|WP_053698675.1|5.818e-838.46FHA domain-containing protein [Streptomyces sp. NR... [more]
gi|1184237485|gb|OSC74079.1|6.307e-839.16hypothetical protein B5180_14800 [Streptomyces sp.... [more]
gi|941938407|gb|ALL00385.1|7.356e-831.58hypothetical protein Pyrde_0335 [Pyrodictium delan... [more]
gi|1113192450|gb|OJU62727.1|1.097e-732.50hypothetical protein BGO01_09970 [Armatimonadetes ... [more]
gi|1051891869|emb|SCD77778.1|1.275e-738.64FtsK/SpoIIIE family protein [Streptomyces sp. Dval... [more]
gi|1051878196|emb|SCE61159.1|1.438e-737.59Inner membrane component of T3SS domain-containing... [more]
gi|1087555062|emb|SDK69343.1|1.495e-741.67FtsK/SpoIIIE family protein [Streptomyces indicus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9214rna9214Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications