rna9212, rna9212 (mRNA) Nannochloropsis gaditana

Overview
Namerna9212
Unique Namerna9212
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1983
Alignment locationKK037252.1:114137..116007 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100019g58.526.mrna
Orig protein idgnl|cribi|Naga_100019g58.526
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:114137..116007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100019g58gene8936Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9212rna9212-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21504.1cds9182Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9212 ID=rna9212|Name=rna9212|organism=Nannochloropsis gaditana|type=mRNA|length=1983bp
GTTTCCAGCGGTGCACGCACGACGTCTCTAATACTCTTATTTTTATTTGG
TGAACACCACCTCGCATTCTCTTTCAACAGGGTATATTCTGCGTTAAACT
CGAAGGTTAAAACTTCTTGTCTACCATGCCTTTTTCTTGCTGCTGTCTGC
AGTGTATCGATACTTCTACTCTGGGCATACAGGAACGCTTTGGGAATTTT
GTGAGGATTTTACCACCTGGAATGAATTTAATCTGCTGGCCTATTGATAA
CGTCGTTGGCCGCGTGAGCGCCAGGGTGCAACAGCTCGTCTGCGACTGCG
GAACTAAGACCAAAGATAACGTTTTCGTGGCCGTGCAGGTCATCGTCCAG
TATCAGGTCATCGTCTCTCAGGCCTACGACGCCTACTACAAGTTGACGGA
CCCCAATCTTCAAATTCGCTCATATGTGGAGGACATCGTACGATCGACAG
TGCCTAAGATGGAGCTCGACATGGCTTTCGAGGCAAAAGAGGAGCTCGCC
CACGCGATCCGGGACTCGTTGCAGCAGACCATGGGCACGTACGGCTACAC
CATCATCCAGTCCCTCGTCCTCGACATCCGCGTGGACGAGAAGGTGAAGA
CAGCCATGAATGAGATCAACGCATCGAAGCGTTTGCGGGAGGCGGCGGCC
GAGAAGGCTGAGGCCGACAAAATCGTCCAAGTCAAGGCCGCCGAGGCCTC
TGCGGAGAGCAAATACCTGAACGGAATGGGCATTGCGCGTGAAAGAAAGG
CGATTGTCGACGGCTTGCGGGGCAGCGTGGAGGAGTTCTCGGAGACGGTA
GAGGGGGCAACTCCCAAGGATGTTATGGATCTGATCCTACTCACCCAGTA
CTTCGACATGCTCAAGGACGTGGGCAACAACCCCACCCCGACGACGCTCT
TCATGACTCACGGCCCGTCGGCGGTCACGGAACTAAAGGAACAGCTTCGT
GCGGGCATTATGCAGAACGCGGCATAAATCGCGAAGATGGATTTAATGCA
GCGATGCCTTCCGTCACGCATGCAGCATATCACATCAGAGGTAGCGCAAT
CAAGTGAAAGGCTCATCGCAGCCAGGTGCCCACGGACGACGTCCCTTGTG
GATAGTTTGTCAATTTTCTTAATTTTCTACGTAAAGAAGTATTCAAATAT
TATGATACGTACACCCCTCCTCTTCACCGCCTGACAATGCGCTTTACGGC
CCCTTTATCTCCTGTACAAAAGGTGGCCGCCTTCCAGCTTCCCCTCGGCG
GTGCTGGGCATTTAGCCCTCCTTCAAGGGTGCTTGCGGCAATCCGTGCGC
ACAGTAACTTTCCAACCCCCTTTCAAACTCCGATGGAGTGCAAGAGAGGT
TTTCGATTTAAAATGGCAAGTACCACGAGTACGACGAGCACAAGAACGTT
TCCCACAGTGAGGGCCTGACAAATGCGGTCGCTGGAAACTTGCCGCTTGA
AGCGCTGTACTGCGTACTCCGCTCGCTCGAGCCCATCCCCAATCCTACCC
GTTTCTTCTGCTAGAGTGTGAATCTGTTGGCCTTGGGATTCCACTCCATC
TCTAGCCTTGCCCGCTACGTCGAGTGTACGGTCCAGCGTTTCAAGCTGCC
GTGCATAGCTCTCCTTCATGCCGTCCTGCATCCGGTCTATCTCTTTCTTG
TACTCCCCTTCCGATGTGTCTTTATCCATATTGATCGCGTGCGAATAGTT
TAATTTCAGTTCCGCTCGACGCACTTCGTCTTGGCACTCCCTGATTTGCC
TCTCCACACCGCGTAACATGTCCTTTCCGGCAGTCCGCTTCACTGGATCC
TTCACAATTCGAACGGCCCGGTCACAGTTTTTGCTCGCCTCTCTCACCTC
ATCCAGACGCCGCTGGCATGCGTCAAGGTGTTTGCGTTTCTGTAATGTAG
CTGTGGAGACACTCCCATGGCTTTCCTTAAGCTCCTTTAAATGGTCCTGC
AGCTCCCCCACCCGCCGCTGCAGTTCTTCTTGC
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protein sequence of rna9212

>rna9212-protein ID=rna9212-protein|Name=rna9212|organism=Nannochloropsis gaditana|type=polypeptide|length=225bp
MSLEHWQEELQRRVGELQDHLKELKESHGSVSTATLQKRKHLDACQRRLD
EVREASKNCDRAVRIVKDPVKRTAGKDMLRGVERQIRECQDEVRRAELKL
NYSHAINMDKDTSEGEYKKEIDRMQDGMKESYARQLETLDRTLDVAGKAR
DGVESQGQQIHTLAEETGRIGDGLERAEYAVQRFKRQVSSDRICQALTVG
NVLVLVVLVVLAILNRKPLLHSIGV
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mRNA from alignment at KK037252.1:114137..116007-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9212 ID=rna9212|Name=rna9212|organism=Nannochloropsis gaditana|type=mRNA|length=1871bp|location=Sequence derived from alignment at KK037252.1:114137..116007- (Nannochloropsis gaditana)
TAGTAGATGCGCATTATCTGTCAGCTGTCGGATACTATTTTCTTTTTCGC
GAAAAGCTACCCAGTAGCTTGGGGTTGAACACGAGAGAAATATAGAAATT
GATATGCCGGCCTTATCCTCATGATGTGTGCGCTAGGCTGCGTGATAAGA
TCGTGTCGCCAACATATCGAAGGTCATGAAGGTTTTGCCGCGGCAGGACC
TAAACATGGGGGAAGGTGGAGGCAGAGGGCGAGAGGGCGAAAGAGGGAGC
GCGGACGCAGGAAGGGGTAAGCGCATGCTTGAGGATAGACACTTGACGTC
GCCTCCCGCAGGAGTGGCAGAATGTATATACACTTCATTTGTAGTTACCG
AGTTGAACACTTGTAGACACGTAGACAGGAGACACCAGCCCTCCTAGGTC
TCTGGGCAACATTCTGGGGGTCTGCCGATCTCTTCACGCACGCTCACGGT
GTGAGTATGTCACTTGAGCACTGGTACGTCGGGTGAGGGCAAGTCCAGCT
GCTTTCGACCAATTTTTGGAAAAGCTCTGGTGACGTAACTTCACCCGAGC
TTTTGGCTACGTTGTGCTCTATCATATATTTTTTTCGGTTCGACATATTT
CCAAAAGGCAAGAAGAACTGCAGCGGCGGGTGGGGGAGCTGCAGGACCAT
TTAAAGGAGCTTAAGGAAAGCCATGGGAGTGTCTCCACAGCTACATTACA
GAAACGCAAACACCTTGACGCATGCCAGCGGCGTCTGGATGAGGTGAGAG
AGGCGAGCAAAAACTGTGACCGGGCCGTTCGAATTGTGAAGGATCCAGTG
AAGCGGACTGCCGGAAAGGACATGTTACGCGGTGTGGAGAGGCAAATCAG
GGAGTGCCAAGACGAAGTGCGTCGAGCGGAACTGAAATTAAACTATTCGC
ACGCGATCAATATGGATAAAGACACATCGGAAGGGGAGTACAAGAAAGAG
ATAGACCGGATGCAGGACGGCATGAAGGAGAGCTATGCACGGCAGCTTGA
AACGCTGGACCGTACACTCGACGTAGCGGGCAAGGCTAGAGATGGAGTGG
AATCCCAAGGCCAACAGATTCACACTCTAGCAGAAGAAACGGGTAGGATT
GGGGATGGGCTCGAGCGAGCGGAGTACGCAGTACAGCGCTTCAAGCGGCA
AGTTTCCAGCGACCGCATTTGTCAGGCCCTCACTGTGGGAAACGTTCTTG
TGCTCGTCGTACTCGTGGTACTTGCCATTTTAAATCGAAAACCTCTCTTG
CACTCCATCGGAGTTTGAAAGGGGGTTGGAAAGTTACTGTGCGCACGGAT
TGCCGCAAGCACCCTTGAAGGAGGGCTAAATGCCCAGCACCGCCGAGGGG
AAGCTGGAAGGCGGCCACCTTTTGTACAGGAGATAAAGGGGCCGTAAAGC
GCATTGTCAGGCGGTGAAGAGGAGGGGTGTACGTATCATAATATTTGAAT
ACTTCTTTACGTAGAAAATTAAGAAAATTGACAAACTATCCACAAGGGAC
GTCGTCCGTGGGCACCTGGCTGCGATGAGCCTTTCACTTGATTGCGCTAC
CTCTGATGTGATATGCTGCATGCGTGACGGAAGGCATCGCTGCATTAAAT
CCATCTTCGCGATTTATGCCGCGTTCTGCATAATGCCCGCACGAAGCTGT
TCCTTTAGTTCCGTGACCGCCGACGGGCCGTGAGTCATGAAGAGCGTCGT
CGGGGTGGGGTTGTTGCCCACGTCCTGTGGGGTCATGGATGAGAGTGACG
CGATATAAGGACGGAAAGAGAATGTGAACGAATGGCTGGGTAGAAGCGGC
GCCTCAAACTGTGACAGGCCGGGTCGAGCGACCCTCCATGGTCCAGACAA
GTGACCTCTCAGCGGTAGCAG
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Coding sequence (CDS) from alignment at KK037252.1:114137..116007-

>rna9212 ID=rna9212|Name=rna9212|organism=Nannochloropsis gaditana|type=CDS|length=1356bp|location=Sequence derived from alignment at KK037252.1:114137..116007- (Nannochloropsis gaditana)
GCAAGAAGAACTGCAGCGGCGGGTGGGGGAGCTGCAGGACCATTTAAAGG
AGCTTAAGGAAAGCCATGGGAGTGTCTCCACAGCTACATTACAGAAACGC
AAACACCTTGACGCATGCCAGCGGCGTCTGGATGAGGTGAGAGAGGCGAG
CAAAAACTGTGACCGGGCCGTTCGAATTGTGAAGGATCCAGTGAAGCGGA
CTGCCGGAAAGGACATGTTACGCGGTGTGGAGAGGCAAATCAGGGAGTGC
CAAGACGAAGTGCGTCGAGCGGAACTGAAATTAAACTATTCGCACGCGAT
CAATATGGATAAAGACACATCGGAAGGGGAGTACAAGAAAGAGATAGACC
GGATGCAGGACGGCATGAAGGAGAGCTATGCACGGCAGCTTGAAACGCTG
GACCGTACACTCGACGTAGCGGGCAAGGCTAGAGATGGAGTGGAATCCCA
AGGCCAACAGATTCACACTCTAGCAGAAGAAACGGGTAGGATTGGGGATG
GGCTCGAGCGAGCGGAGTACGCAGTACAGCGCTTCAAGCGGCAAGTTTCC
AGCGACCGCATTTGTCAGGCCCTCACTGTGGGAAACGTTCTTGTGCTCGT
CGTACTCGTGGTACTTGCCATTTTAAATCGAAAACCTCTCTTGCACTCCA
TCGGAGTTTGAATGTCACTTGAGCACTGGCAAGAAGAACTGCAGCGGCGG
GTGGGGGAGCTGCAGGACCATTTAAAGGAGCTTAAGGAAAGCCATGGGAG
TGTCTCCACAGCTACATTACAGAAACGCAAACACCTTGACGCATGCCAGC
GGCGTCTGGATGAGGTGAGAGAGGCGAGCAAAAACTGTGACCGGGCCGTT
CGAATTGTGAAGGATCCAGTGAAGCGGACTGCCGGAAAGGACATGTTACG
CGGTGTGGAGAGGCAAATCAGGGAGTGCCAAGACGAAGTGCGTCGAGCGG
AACTGAAATTAAACTATTCGCACGCGATCAATATGGATAAAGACACATCG
GAAGGGGAGTACAAGAAAGAGATAGACCGGATGCAGGACGGCATGAAGGA
GAGCTATGCACGGCAGCTTGAAACGCTGGACCGTACACTCGACGTAGCGG
GCAAGGCTAGAGATGGAGTGGAATCCCAAGGCCAACAGATTCACACTCTA
GCAGAAGAAACGGGTAGGATTGGGGATGGGCTCGAGCGAGCGGAGTACGC
AGTACAGCGCTTCAAGCGGCAAGTTTCCAGCGACCGCATTTGTCAGGCCC
TCACTGTGGGAAACGTTCTTGTGCTCGTCGTACTCGTGGTACTTGCCATT
TTAAATCGAAAACCTCTCTTGCACTCCATCGGAGTTTGAATGTCACTTGA
GCACTG
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Synonyms
Publications