EWM21504.1, cds9182 (CDS) Nannochloropsis gaditana

Overview
NameEWM21504.1
Unique Namecds9182
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:115535..115551 -
Alignment locationKK037252.1:114740..115400 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21504.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100019g58.526.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:115535..115551 -
KK037252.1supercontigKK037252.1:114740..115400 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM21504.1 vs. NCBI_GenBank
Match: gi|585101734|gb|EWM21504.1| (hypothetical protein Naga_100019g58 [Nannochloropsis gaditana])

HSP 1 Score: 454.521 bits (1168), Expect = 1.288e-161
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0
Query:    1 MSLEHWQEELQRRVGELQDHLKELKESHGSVSTATLQKRKHLDACQRRLDEVREASKNCDRAVRIVKDPVKRTAGKDMLRGVERQIRECQDEVRRAELKLNYSHAINMDKDTSEGEYKKEIDRMQDGMKESYARQLETLDRTLDVAGKARDGVESQGQQIHTLAEETGRIGDGLERAEYAVQRFKRQVSSDRICQALTVGNVLVLVVLVVLAILNRKPLLHSIGV 225
            MSLEHWQEELQRRVGELQDHLKELKESHGSVSTATLQKRKHLDACQRRLDEVREASKNCDRAVRIVKDPVKRTAGKDMLRGVERQIRECQDEVRRAELKLNYSHAINMDKDTSEGEYKKEIDRMQDGMKESYARQLETLDRTLDVAGKARDGVESQGQQIHTLAEETGRIGDGLERAEYAVQRFKRQVSSDRICQALTVGNVLVLVVLVVLAILNRKPLLHSIGV
Sbjct:    1 MSLEHWQEELQRRVGELQDHLKELKESHGSVSTATLQKRKHLDACQRRLDEVREASKNCDRAVRIVKDPVKRTAGKDMLRGVERQIRECQDEVRRAELKLNYSHAINMDKDTSEGEYKKEIDRMQDGMKESYARQLETLDRTLDVAGKARDGVESQGQQIHTLAEETGRIGDGLERAEYAVQRFKRQVSSDRICQALTVGNVLVLVVLVVLAILNRKPLLHSIGV 225          
BLAST of EWM21504.1 vs. NCBI_GenBank
Match: gi|585113016|gb|EWM30357.1| (soluble nsf attachment protein receptor [Nannochloropsis gaditana])

HSP 1 Score: 63.929 bits (154), Expect = 1.315e-8
Identity = 54/235 (22.98%), Postives = 106/235 (45.11%), Query Frame = 0
Query:    3 LEHWQEELQRRVGELQDHLKELKESHGSVSTATLQKRKHLDACQRRLDEVREASKNCDRAVRI-VKDPVKRTAGKDMLRGVERQIRECQDEVRRAELKLNYSHAI----------NMDKDTSEGEYKKEIDRMQDGMKESYARQLETLDRTLDVAGKARDGVESQGQQIHTLAEETGRIGDGLERAEYAVQRFKRQVSSDRICQALTVGNVLVLVVLVVLAILN----RKPLLHS 222
            +E+W  EL  ++ EL+  +  LK   G    A + K       +  L  VRE  K  +  +R+ +K+  +R    + L+ V+ +I   + E++ A+ + N                ++++ +   Y  E  ++QD  + S    L  ++ +  V     D V  Q +QI  + +    + DGL RA+  ++ F R++++D+  Q   V N  +LV ++V   +     R P +H+
Sbjct:    4 IEYWDGELSSKLAELEQTIGNLKSMRGGDKEAGIAK------SEATLKRVREVKKGYNYEMRMSLKNDPRRHEYAEKLKAVDERIAALETELKWAKTEANKKSLFKGSKGADGSGTLNENATNDTYLTEAKKIQDKTEASLQSALGMVEASKQVGANTVDEVNRQKEQIAEITDTVEAMEDGLTRADKLIRAFGRRIATDKFIQFFFVLNFGLLVGIIVWYAVKKGKVRAPEIHA 232          
BLAST of EWM21504.1 vs. NCBI_GenBank
Match: gi|1210524621|dbj|GAX16521.1| (hypothetical protein FisN_7Lh244 [Fistulifera solaris])

HSP 1 Score: 62.003 bits (149), Expect = 5.737e-8
Identity = 48/229 (20.96%), Postives = 110/229 (48.03%), Query Frame = 0
Query:    3 LEHWQEELQRRVGELQDHLKELKESHGSVSTATLQKRKHLDACQRRLDEVREASKNCDRAVRIVKDPVKRTAGKDMLRGVERQIRECQDEVRRAELKLNYSHAINMDKDTSEGEYK------------KEIDRMQDGMKESYARQLETLDRTLDVAGKARDGVESQGQQIHTLAEETGRIGDGLERAEYAVQRFKRQVSSDRICQALTVGNVLVLVVLVVLAILNRKPL 219
            +++W++ L   +  +   L+++    G+       K++ ++ C+++L +   + ++    +R+V+D   R   +  L  +++Q++  Q + +  E + N    +  D    E ++             KE   +QD  ++S A     +  + +V     + +E Q   I  + +ET R+ D L RAE  +++F ++++SD   Q   + N ++LVV+V+ AI+ +  L
Sbjct:    4 IQYWEDILAEDIQHITAMLEDIPHMKGA------DKKREINNCKKKLRDAAGSKRSFKMEIRLVQDQALRKEYEARLNRLDQQLKVMQQDCKAFEAE-NARGELFTDGGDEERQFNEADGVKAGDSMLKEASALQDKTQDSLANTKNMIASSKEVGVATLEELERQRNVIQNIEKETDRLDDNLARAEALIKQFSKRMASDHFIQCFAMINCILLVVVVLYAIIKKGSL 225          
The following BLAST results are available for this feature:
BLAST of EWM21504.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585101734|gb|EWM21504.1|1.288e-161100.00hypothetical protein Naga_100019g58 [Nannochlorops... [more]
gi|585113016|gb|EWM30357.1|1.315e-822.98soluble nsf attachment protein receptor [Nannochlo... [more]
gi|1210524621|dbj|GAX16521.1|5.737e-820.96hypothetical protein FisN_7Lh244 [Fistulifera sola... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9212rna9212Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications