rna9208, rna9208 (mRNA) Nannochloropsis gaditana

Overview
Namerna9208
Unique Namerna9208
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1974
Alignment locationKK037252.1:109327..110646 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100019g62.509.mrna
Orig protein idgnl|cribi|Naga_100019g62.509
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:109327..110646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100019g62gene8932Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9208rna9208-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21487.1cds9178Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9208 ID=rna9208|Name=rna9208|organism=Nannochloropsis gaditana|type=mRNA|length=1974bp
TCTTCCCAACAGAGCTCTAAGTCAGAGGAGCCGCACAGCACGGACTCCAG
GAGCCCCGCAATGTCGGGGGTGGACCAGCTTACGGCTAGTGAAAGGGGCT
TGCGGCGGGCGTATGATCTGCTAAAGGAGCAGTGGCACAACAGGAGACAG
TAAAGGGCTGAAGCGACCTTCAACGGGTGGAGGTCCGAAGCGCCCCACCA
TGATGGGCGACGGCAGTGGACGGGTTGGTGCGAGGCGCTCAAATGTGGTA
TCATTGCAAAGCCGTCGGAAGCAAGAGATGAGTGAGGATTTAAAGCCTGG
AGTCCTGACTGGAGAGGGCTGGGGAAAGGCTCCTTCGCAGGAAGAGGGGG
CCCGAGAGGGGCACGCGACGAGCGGCCGGGCGGGTCCAAGGACCCCTGGA
AGCGGAGGGGCTCAAAACGAGAAAATGCAAACCGAGCACGCTGGGACTCG
GTCCAATATCTCCGTCAGTCTTGACACTCTTTCAAAGCGGCCCAAGCAGG
CCGACGATTTCGTCATCCCGAAAAAGGCGAAACTTGTGGCCTGCGACGAG
GGCGCCCTCATCTCCGACATCGGTCAACACAGCGATGCATTCGGATCAAC
CCGATCATTGGCGTCGAGCGCCGTAAGCCAGGGGGGAGGATTGCTAGAAC
ACGAGGGAACGCGCGCGGGGAAAGAGATCGGAGCGGTGTTTGTGGAGGGG
AAGTCCTTGGACCGCGCACGCTTCCCCACTCAGTGGCTGGCGCGGGGCGC
CCTGGAAGAGTGGGACTCGCGGCAGGCGGAGGGACCCTTGGTGATGCCTC
TTAAAGACTTCGGCATCACACCGGAATCCGGCAAGAAGAAGGTGCTGGCG
CTTCGGATGACTGTTGCCTCCACCGCCAAGCGCTTCACAATAAACATTTG
TCCAGGCCCGCTCGCGCCTGAAGAGGGCCAGGAGGTGGCCCCCAAGGATG
TGATCGCGCATTTTAACCCCCGGCGAATCTACAAAAATGGCTCCCTCGTC
TACAATGCTCGGTATGAGAACAGGTGGATAGACGACCCCCCGCCCACGGT
GCCCCTCAAGGGCCTCCCCCCGCTGTTTTGCGACTCGCCCGTCACGCTCC
TCATCTCGTTCGACAAGGATCTCGTCTCGCTCGCCCTCGACGACCAGCCC
GCCTGCGAGATCTTCCTGAACGCGGACGGGCGAGGCGAGGCCCTCGATCG
CCTTGACGAGCTGGCCCTACACCTACCTATCAAGGAGGACACCGTGGGAT
TTCAGGAAGAGGTTGTGCTGCATGAAGTGTGGTGGAGCCCGGAACCTCCC
GCCGAGCAAGGGAGGGGGGAGCGAGCGAGCGCAGCGGGCGCGGAATCTGC
CCCTTTTGCACCTCTTGACACGGAGGTCGCGCGCGCCGCGGCCGCGGCAG
CGGCCGCCGTCATAGACTTGGGTGTGAGCAAGGGCGCTGGCCGAGCGACG
GTTGGACACGAGGGAAGAGCTGCAGACATGCAGCCGCAGTTCTCTCAACC
CCTTCCATTCGACCCAGCGCCAGCGCGCTACGGCCCTCTAATGTCTGAGA
GCCATGAGAAGGGCGTCGATGGAGGAAGTGATGGAATGGGCATGAAACTT
TCGCGGCTGGGCGGTCTGCTACGGAGTGTCAATGAGAGGGGCCCTGGGTC
TGTTGTGGCAGTGAACAACCTCCCCGAGACACAGGCTCAGGACGCAGTGG
AACGTATCAAAGAAGACCTGCGGACGCTCTTTCAAGGTGTGGGCCAATGT
CCACGGGAAGTGCACTTTAAGCCGAATTCGTCCACAGCTTTCGTTGTTCT
GGACGACCCACGAGACTTGACAGAGACCGTCAAATGCTTAGACTGGGCGG
AATACGCTGGCAAGAAATTGCGCATGTCTCGTTCGAGCAAGCGATCCTTC
TGATTGTTTGTCGCTCGGCAGAAAAATGAGGAGTCTAGCTGTGCAACACA
AAGAAATTCACAAATGTAAAAAGA
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protein sequence of rna9208

>rna9208-protein ID=rna9208-protein|Name=rna9208|organism=Nannochloropsis gaditana|type=polypeptide|length=439bp
MLSASSASIASALPASDPNFPASLQGVSARGLVSLERAEQILQRLIDTVN
EQGLQISSIFLLLQTLVGTDTQPLPRSLLDVEGKFSRLSHRLERIEQAIQ
VPGLAPGVSIGEVVNANGVELNHAAEALLTKADKADVEVRQHKLEEEVAG
VYAWAGARELVERLEESNRATRVQVHAMETALGCKLDKSELAGMEATVNR
LKAFDARMETLERGHVQNMADVQAKVQALEEHRMETDRLVGATRRAVGEL
EERHGAWKMETLELLKEVDKELAATASVTQLERKLDARVWEREWRSACER
LDQKVDVPEMVALAERLESVAGDLVKLSRESDQYSRFVAWYYSRGQAYEH
NMQTLNRTLGRLARDSLLKHVASAEVRSGIGGGQRGEYGSQVENGIRDRG
LDDRELILSSSSSDTASPPNTESTPEDEHAKEGSFKPLA
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mRNA from alignment at KK037252.1:109327..110646+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9208 ID=rna9208|Name=rna9208|organism=Nannochloropsis gaditana|type=mRNA|length=1320bp|location=Sequence derived from alignment at KK037252.1:109327..110646+ (Nannochloropsis gaditana)
ATGctgtctgcctcctccgcctcgataGCTTCAGCCCTACCAGCTAGTGA
TCCTAATTTTCCAGCCTCTTTGCAGGGTGTCAGTGCGCGTGGTCTGGTGA
GCTTAGAGCGTGCGGAGCAAATACTACAACGCCTCATTGATACCGTGAAC
GAGCAAGGACTGCAAATTTCGAGCATATTTTTGCTACTACAGACCTTGGT
GGGGACGGATACCCAGCCGCTGCCTCGTAGCCTCCTGGACGTAGAGGGCA
AGTTTTCCCGCCTCAGTCATCGCCTAGAAAGGATCGAGCAAGCCATCCAG
GTTCCGGGACTTGCGCCCGGCGTATCTATCGGTGAGGTTGTGAACGCGAA
CGGAGTAGAACTGAACCACGCAGCTGAAGCACTTTTGACAAAGGCCGATA
AAGCTGACGTCGAGGTCAGACAGCacaagctggaagaggaggtcgccGGT
GTCTATGCGTGGGCTGGGGCGAGGGAGCTCGTGGAGCGGCTGGAGGAGTC
AAATCGCGCCACACGCGTTCAAGTGCATGCTATGGAGACCGCCCTGGGGT
GTAAGCTGGACAAATCGGAGCTTGCCGGGATGGAGGCTACCGTGAACCGC
CTGAAGGCTTTCGATGCGCGCATGGAGACCTTGGAGCGAGGGCATGTCCA
GAACATGGCCGACGTGCAGGCAAAGGTACAAGCCCTCGAAGAGCATAGGA
TGGAAACAGACAGGTTGGTGGGCGCGACGCGCAGGGCTGTGGGAGAGTTG
GAAGAGAGGCACGGCGCCTGGAAAATGGAGACTCTGGAGCTTctcaagga
ggtggacaaggagctgGCCGCGACAGCCTCCGTCACGCAGCTGGAGAGAA
AGCTTGACGCCCGTGTGTGGGAGCGAGAATGGCGTTCGGCCTGCGAGCGT
CTGGACCAAAAAGTCGATGTACCTGAGATGGTTGCGCTGGCGGAGAGACT
GGAAAGCGTGGCAGGAGACCTTGTGAAGCTGAGCAGAGAAAGCGACCAGT
ACTCCCGCTTTGTAGCGTGGTATTATTCACGAGGACAAGCTTACGAGCAC
AACATGCAGACACTCAACCGTACCCTCGGTCGACTAGCAAGGGACTCCCT
CTTGAAACATGTGGCATCAGCGGAGGTCCGGAGTGGCATAGGAGGCGGGC
AAAGAGGAGAGTATGGGTCACAAGTAGAAAATGGCATAAGAGATCGAGGT
TTGGACGATAGAGAGCTTATtttgtcttcctcgtcttcagaCACGGCATC
GCCACCTAACACAGAGAGCACGCCTGAGGACGAACACGCCAAGGAGGGAT
CCTTCAAACCACTTGCGTAG
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Coding sequence (CDS) from alignment at KK037252.1:109327..110646+

>rna9208 ID=rna9208|Name=rna9208|organism=Nannochloropsis gaditana|type=CDS|length=1320bp|location=Sequence derived from alignment at KK037252.1:109327..110646+ (Nannochloropsis gaditana)
ATGctgtctgcctcctccgcctcgataGCTTCAGCCCTACCAGCTAGTGA
TCCTAATTTTCCAGCCTCTTTGCAGGGTGTCAGTGCGCGTGGTCTGGTGA
GCTTAGAGCGTGCGGAGCAAATACTACAACGCCTCATTGATACCGTGAAC
GAGCAAGGACTGCAAATTTCGAGCATATTTTTGCTACTACAGACCTTGGT
GGGGACGGATACCCAGCCGCTGCCTCGTAGCCTCCTGGACGTAGAGGGCA
AGTTTTCCCGCCTCAGTCATCGCCTAGAAAGGATCGAGCAAGCCATCCAG
GTTCCGGGACTTGCGCCCGGCGTATCTATCGGTGAGGTTGTGAACGCGAA
CGGAGTAGAACTGAACCACGCAGCTGAAGCACTTTTGACAAAGGCCGATA
AAGCTGACGTCGAGGTCAGACAGCacaagctggaagaggaggtcgccGGT
GTCTATGCGTGGGCTGGGGCGAGGGAGCTCGTGGAGCGGCTGGAGGAGTC
AAATCGCGCCACACGCGTTCAAGTGCATGCTATGGAGACCGCCCTGGGGT
GTAAGCTGGACAAATCGGAGCTTGCCGGGATGGAGGCTACCGTGAACCGC
CTGAAGGCTTTCGATGCGCGCATGGAGACCTTGGAGCGAGGGCATGTCCA
GAACATGGCCGACGTGCAGGCAAAGGTACAAGCCCTCGAAGAGCATAGGA
TGGAAACAGACAGGTTGGTGGGCGCGACGCGCAGGGCTGTGGGAGAGTTG
GAAGAGAGGCACGGCGCCTGGAAAATGGAGACTCTGGAGCTTctcaagga
ggtggacaaggagctgGCCGCGACAGCCTCCGTCACGCAGCTGGAGAGAA
AGCTTGACGCCCGTGTGTGGGAGCGAGAATGGCGTTCGGCCTGCGAGCGT
CTGGACCAAAAAGTCGATGTACCTGAGATGGTTGCGCTGGCGGAGAGACT
GGAAAGCGTGGCAGGAGACCTTGTGAAGCTGAGCAGAGAAAGCGACCAGT
ACTCCCGCTTTGTAGCGTGGTATTATTCACGAGGACAAGCTTACGAGCAC
AACATGCAGACACTCAACCGTACCCTCGGTCGACTAGCAAGGGACTCCCT
CTTGAAACATGTGGCATCAGCGGAGGTCCGGAGTGGCATAGGAGGCGGGC
AAAGAGGAGAGTATGGGTCACAAGTAGAAAATGGCATAAGAGATCGAGGT
TTGGACGATAGAGAGCTTATtttgtcttcctcgtcttcagaCACGGCATC
GCCACCTAACACAGAGAGCACGCCTGAGGACGAACACGCCAAGGAGGGAT
CCTTCAAACCACTTGCGTAG
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Synonyms
Publications