EWM21487.1, cds9178 (CDS) Nannochloropsis gaditana

Overview
NameEWM21487.1
Unique Namecds9178
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:109327..110646 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21487.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100019g62.509.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:109327..110646 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM21487.1 vs. NCBI_GenBank
Match: gi|585101717|gb|EWM21487.1| (hypothetical protein Naga_100019g62 [Nannochloropsis gaditana])

HSP 1 Score: 885.174 bits (2286), Expect = 0.000e+0
Identity = 439/439 (100.00%), Postives = 439/439 (100.00%), Query Frame = 0
Query:    1 MLSASSASIASALPASDPNFPASLQGVSARGLVSLERAEQILQRLIDTVNEQGLQISSIFLLLQTLVGTDTQPLPRSLLDVEGKFSRLSHRLERIEQAIQVPGLAPGVSIGEVVNANGVELNHAAEALLTKADKADVEVRQHKLEEEVAGVYAWAGARELVERLEESNRATRVQVHAMETALGCKLDKSELAGMEATVNRLKAFDARMETLERGHVQNMADVQAKVQALEEHRMETDRLVGATRRAVGELEERHGAWKMETLELLKEVDKELAATASVTQLERKLDARVWEREWRSACERLDQKVDVPEMVALAERLESVAGDLVKLSRESDQYSRFVAWYYSRGQAYEHNMQTLNRTLGRLARDSLLKHVASAEVRSGIGGGQRGEYGSQVENGIRDRGLDDRELILSSSSSDTASPPNTESTPEDEHAKEGSFKPLA 439
            MLSASSASIASALPASDPNFPASLQGVSARGLVSLERAEQILQRLIDTVNEQGLQISSIFLLLQTLVGTDTQPLPRSLLDVEGKFSRLSHRLERIEQAIQVPGLAPGVSIGEVVNANGVELNHAAEALLTKADKADVEVRQHKLEEEVAGVYAWAGARELVERLEESNRATRVQVHAMETALGCKLDKSELAGMEATVNRLKAFDARMETLERGHVQNMADVQAKVQALEEHRMETDRLVGATRRAVGELEERHGAWKMETLELLKEVDKELAATASVTQLERKLDARVWEREWRSACERLDQKVDVPEMVALAERLESVAGDLVKLSRESDQYSRFVAWYYSRGQAYEHNMQTLNRTLGRLARDSLLKHVASAEVRSGIGGGQRGEYGSQVENGIRDRGLDDRELILSSSSSDTASPPNTESTPEDEHAKEGSFKPLA
Sbjct:    1 MLSASSASIASALPASDPNFPASLQGVSARGLVSLERAEQILQRLIDTVNEQGLQISSIFLLLQTLVGTDTQPLPRSLLDVEGKFSRLSHRLERIEQAIQVPGLAPGVSIGEVVNANGVELNHAAEALLTKADKADVEVRQHKLEEEVAGVYAWAGARELVERLEESNRATRVQVHAMETALGCKLDKSELAGMEATVNRLKAFDARMETLERGHVQNMADVQAKVQALEEHRMETDRLVGATRRAVGELEERHGAWKMETLELLKEVDKELAATASVTQLERKLDARVWEREWRSACERLDQKVDVPEMVALAERLESVAGDLVKLSRESDQYSRFVAWYYSRGQAYEHNMQTLNRTLGRLARDSLLKHVASAEVRSGIGGGQRGEYGSQVENGIRDRGLDDRELILSSSSSDTASPPNTESTPEDEHAKEGSFKPLA 439          
BLAST of EWM21487.1 vs. NCBI_GenBank
Match: gi|673039529|ref|XP_008873725.1| (hypothetical protein H310_09433 [Aphanomyces invadans] >gi|574470506|gb|ETV97516.1| hypothetical protein H310_09433 [Aphanomyces invadans])

HSP 1 Score: 72.0182 bits (175), Expect = 4.116e-10
Identity = 102/399 (25.56%), Postives = 172/399 (43.11%), Query Frame = 0
Query:   24 LQGVSARGLVSLERAEQILQRLIDTV----NEQG-LQISSIFLLLQTLVGTDTQPLPRSLLDVEGKFSRLSHRLERIEQAIQVPGLAPGVSIGEVVNANGVELNHAAEALLTKADKADVEVRQHKLEEEVAGVYAW----AGARELVERLEESNRATRVQVHAMETALGCKLDKSELAGMEATVNRLKAFDARMETLERGHVQ---NMADVQAKVQALEEH-RMET---DRLVGATRRAVGEL--EERHGAWKMET---------------LELLKEVDKELAAT--ASVTQLER-----------KLDARVWEREWRSACERLDQKVDVPEMVALAERLESVAGDLVKLSRESDQYS----RFVAWYYSRGQAYEHNMQTLNRTLGRLARDSLLKHVA 372
            +Q  S   LV +  AE   + L+DT+    NE G L+ S   L+LQ  V +          +V    + L  R++ +E AI++P +    ++G +V AN  E+    E L  K D A VE    ++E +++             EL+ RL         ++  +E  +  K+DK+E   M+A    + AF  R   +E    Q    +A   AK +  ++H   ET    +LV    R VG L  E   G   +E                L+ +++   + AA+  +S+ QL +           +LD +V   +W +    ++  V     +A+    ++V   L +     D +     RF+ WY++RG AYEHNMQ +   L +L+    L+HV+
Sbjct:    6 MQRRSLADLVDMRAAESTFKCLMDTLEAQANEIGQLKASVAALVLQNSVQSAWND------NVTITQATLMPRIDALEAAIKLPNV-RNATLGSIVAANYKEIVSMREKLQRKIDAAVVEDACRRVETKLSSALDTLRKDCVTLELISRLHMDQDELHTKLATVEAQIDSKMDKTEATRMDAVATTMHAFIPRCSEIEHSLQQLHEKLAASNAKCRQHDQHVSTETAHLRQLVSQQHRDVGALRAETTAGQATIEAAVQACKENISLCHNKLQTIRQAHADFAASTRSSLRQLTQTGERNFQSLRDELDGKVSRTDWDAQRREMEALVQTKTPLAVTAATKAVVDKLDEWVTRCDAHVQLSLRFIDWYFNRGDAYEHNMQVMEAQLKQLS----LRHVS 393          
BLAST of EWM21487.1 vs. NCBI_GenBank
Match: gi|298708598|emb|CBJ30682.1| (hypothetical protein Esi_0209_0049 [Ectocarpus siliculosus])

HSP 1 Score: 64.3142 bits (155), Expect = 8.157e-8
Identity = 54/199 (27.14%), Postives = 97/199 (48.74%), Query Frame = 0
Query:   32 LVSLERAEQILQRLIDTVNEQGLQISSIFL-LLQTLVGTDTQPLPRSLLDVEGKFSRLSHRLERIEQAIQVP----GLAPGVSIGEVVNANGVELNHAAEALLTKADKADVEVRQHKLE----EEVAGVYAWAGARELVERLEESNRATRVQVHAMETALGCKLDKSELAGMEATVNRLKAF-----DA--RMETLERG 214
            +++L++AE + QRL++ V    L ++++   + +   G D + +     ++ G+ + L  R+   E A+ +P    G     ++GE V ANG  L   ++ L  KA + D+  +  +LE    E    V  W   R+  + L  +NR    ++ A+E  L  K+D+SEL  M+A   ++        DA  R+ TLE G
Sbjct:    7 ILNLDKAELVFQRLVEAVESHSLDLAAVRRDVSRKASGEDLRGM---CTEINGRLAALERRVAATEAAVSIPENSGGSGVSFTVGEAVRANGQALLGLSKQLEEKAGRDDLSAKGEELEACIRERERAVRQWGVGRDFADSLGRANRGLAGKLLAVEGVLSTKIDRSELDNMQAACAKVSTVSDFLDDAARRVSTLEAG 202          
The following BLAST results are available for this feature:
BLAST of EWM21487.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585101717|gb|EWM21487.1|0.000e+0100.00hypothetical protein Naga_100019g62 [Nannochlorops... [more]
gi|673039529|ref|XP_008873725.1|4.116e-1025.56hypothetical protein H310_09433 [Aphanomyces invad... [more]
gi|298708598|emb|CBJ30682.1|8.157e-827.14hypothetical protein Esi_0209_0049 [Ectocarpus sil... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9208rna9208Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications