rna9206, rna9206 (mRNA) Nannochloropsis gaditana

Overview
Namerna9206
Unique Namerna9206
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length447
Alignment locationKK037252.1:104054..106452 -

Link to JBrowse

Properties
Property NameValue
Producttranslation elongation factor 1
Orig transcript idgnl|cribi|Naga_100019g64.507.mrna
Orig protein idgnl|cribi|Naga_100019g64.507
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:104054..106452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100019g64gene8930Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21485.1cds9176Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9206rna9206-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9206 ID=rna9206|Name=rna9206|organism=Nannochloropsis gaditana|type=mRNA|length=447bp
ATGGCATTTCGGCCTCTCCAAGATCCGGCGCCAAGTTCAACGCCTCTTTC
TCCAGCCTCCAATCCTGTCTGCGATGCGTCTTTGCGCGACAAATCGCGCA
TACGGCCAGAATCTATCGTTGGTCTGAGATTAAAATGTACTTGTAAATTT
TTCAAACGTCCGTGGTGCTGTTTCGGAGGGCAAGGCTGTTTTTCCCAGAC
GACGCACGAAAGCGATACGCGTTTTTTGGGTTGGGCCGAAAAGAAATTCC
GCACAATGTTGATAAAGTTGGGCTTGATGTCGACTCGCCAACCAGATGGG
AAATACGACCGACAGAGACAAACGCGAATGAGATGTACAGGGGCAGAGCT
AAAGGCAATTGAAAGGGGCTGCACGCCACTAGTAATTAAATTGTCCACAG
ATACTTTGACGTGGCCGAGTAAAGAAGAAGTGCTCCATAGCATATGA
back to top

protein sequence of rna9206

>rna9206-protein ID=rna9206-protein|Name=rna9206|organism=Nannochloropsis gaditana|type=polypeptide|length=444bp
MGKEKVHVNLVVIGHVDAGKSTTTGHLIYKCGGIDKRVIEKFEKEAAELG
KSSFKYAWVLDKLKAERERGITIDIALWKFESPKYYFTIIDAPGHRDFIK
NMITGTSQADVAILIVASGTGEFEAGIGKDGQTREHALLAFTLGVKQMIV
CVNKMDDSSVNYGEARFNEIKEEVSNYLKKVGYKPAKVPFIPISGWNGDN
MIDRSTNMAWYKGPTLLEALDNINPPKRPTDKPLRLPLQDVYKIGGIGTV
PVGRVETGVLKPGMVVTIAPAMVTTEVKSVEMHHESMAEALPGDNVGFNV
KNVSVKEIRRGYVAGDSKKDPPAGAANFVAQVIVMNHPGQIQNGYCPVLD
CHTAHVACKFAEITEKIDRRTGAVTEANPKFVQSGDGCYVTLEPSKPMVV
ESFTEYPPLGRFAVRDMRQTVAVGVVKSVDKKATDSKKGGAKKK
back to top

mRNA from alignment at KK037252.1:104054..106452-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9206 ID=rna9206|Name=rna9206|organism=Nannochloropsis gaditana|type=mRNA|length=2399bp|location=Sequence derived from alignment at KK037252.1:104054..106452- (Nannochloropsis gaditana)
TGCTTGATTCGAGGTACACGTTAGAGATATGAGGCACATAGCACTTCGCT
GGCACCCCCGCGTGTAGGCGTGTCCTCATCCGTGTTTGGTTTGGTACGTC
GGTTACCGGAGAGGCCTGTGTGGCTGTCACGCGCGACGAAGACGGGGGAG
TGTTGCCTCGTGCCTCCAGGTGCTTTGATGACGCGCATTGCGCGTTTCGC
TTATCCAAACACCGCAATCACTATTTGACCATGCAATCAGGTTGATAGGG
ACGTCAAAGTGCATTTTCTGCCTTTAAACTGGTCGCGCGGGTGTACATGT
GGCATCTGGACGGGACCCTCAGAACGAAGAAAACAAGATAGGGATGGCTA
AGAATTGCACACGCCCCTCGTGTGGCTGAAAGACTTTTGCGCCACATTAA
CGCGTAAACAAATTGAGCTAGTCTTACAGTTATTCAGGAGGAGGACAAAA
TTATGTCGTCCGACCGTGTGTTATCTAGGAAGCCATGACGCGAGACATAT
GCCTAGTATCTCTAGTACGGCTGCGTCTTCTTTCCTCCCTTTTTGAAAGG
AAGACGTCGGTGTCCGCGATTCTATTTTATGCGAAAGGTGTGGGAGGTGC
ATTAGTCGCGCTTTTCTTGATAGTTGACCGTCTGGCTGATTCAGGGAAAT
CCTCACACCATCCTGTCTTTCTCACACGACAGCCTCTTCTTTCGGAATAT
TCCCCTCAACACCTAATCTGTAAACCATGGGTAAGGAGAAGGTCCACGTC
AACTTGGTCGTGATTGGGCACGTCGATGCCGGTAAGTCGACCACCACGGG
CCATCTGATCTACAAGTGCGGCGGTATCGACAAGCGTGTGATTGAGAAGT
TCGAGAAGGAGGCGGCTGAGTTGGGAAAGTCTTCTTTCAAATACGCCTGG
GTGCTGGACAAGCTTAAGGCCGAGCGTGAGCGTGGGATCACCATCGATAT
CGCCCTCTGGAAGTTTGAGTCCCCCAAGTACTACTTCACCATCATCGACG
CCCCTGGCCACCGAGACTTCATCAAGAACATGATTACGGGGACCTCCCAG
GCGGATGTGGCTATTTTGATCGTGGCCTCCGGGACGGGTGAGTTTGAGGC
TGGTATCGGCAAGGACGGGCAGACGCGCGAGCATGCTTTGCTCGCTTTCA
CCCTGGGCGTAAAGCAGATGATCGTGTGCGTGAACAAGATGGACGACTCC
TCTGTCAACTACGGGGAAGCACGATTCAACGAGATCAAGGAGGAAGTGTC
CAACTACCTCAAGAAGGTAGGATACAAGCCCGCAAAGGTCCCGTTCATCC
CCATCTCCGGCTGGAACGGCGACAACATGATCGACCGCTCCACTAACATG
GCCTGGTACAAGGGGCCCACTCTCTTGGAAGCCCTCGACAACATCAACCC
GCCCAAGCGCCCTACGGACAAGCCCCTCCGCCTCCCTCTGCAGGACGTGT
ACAAGATCGGCGGTATCGGCACCGTGCCCGTAGGCCGAGTGGAGACGGGC
GTGCTCAAGCCCGGCATGGTGGTGACCATCGCCCCCGCCATGGTGACCAC
GGAAGTCAAGTCCGTAGAGATGCACCACGAGTCGATGGCGGAGGCTCTGC
CCGGCGACAACGTGGGTTTCAACGTGAAGAACGTGTCTGTGAAGGAGATC
CGCCGAGGATACGTGGCGGGAGACTCCAAGAAGGACCCGCCCGCCGGCGC
CGCCAATTTCGTGGCACAGGTCATCGTTATGAACCACCCTGGCCAGATCC
AGAATGGCTACTGCCCGGTGCTGGATTGCCACACGGCGCACGTCGCGTGC
AAGTTCGCGGAGATTACCGAGAAGATCGACCGACGCACAGGTGCGGTCAC
CGAGGCCAACCCCAAGTTCGTGCAGTCCGGTGACGGCTGCTACGTGACCT
TGGAGCCCTCTAAGCCCATGGTGGTGGAGTCTTTCACCGAATACCCTCCT
CTGGGCCGTTTCGCCGTGCGTGACATGCGACAGACTGTGGCGGTCGGTGT
GGTAAAGAGCGTGGATAAGAAGGCAACGGACTCGAAGAAGGGTGGTGCCA
AGAAGAAGTGAGCCCAAGAGTAGGAGTAGCATCGTCGAGAGGGATTTTTC
TGGTGGATAGGAAAACTGAGGGAGGAGAGTGGTAGGGCGGGATCTGGGAA
AGAGCACGGAGGGCTGATTGAGCGGATGCCAGGAATGATGAATATTTCTT
TGGTTCTGCATTTGGTCCGTTTCTCCATGCCCGAAGCCTGATGGATGTGA
AAGCGGCGAGATAGGGTCTGATAGCGCCACGAAGCACAGAAGGGAGGCAT
AAAGAATAAACCACCCCGTGAACATGGGATAAAGAAAAGCAAGTTATCGC
TATGCTGTTTACAATCAGGAGATCACAGAAAAGAGTGAAGTAGAAGCGA
back to top

Coding sequence (CDS) from alignment at KK037252.1:104054..106452-

>rna9206 ID=rna9206|Name=rna9206|organism=Nannochloropsis gaditana|type=CDS|length=1335bp|location=Sequence derived from alignment at KK037252.1:104054..106452- (Nannochloropsis gaditana)
ATGGGTAAGGAGAAGGTCCACGTCAACTTGGTCGTGATTGGGCACGTCGA
TGCCGGTAAGTCGACCACCACGGGCCATCTGATCTACAAGTGCGGCGGTA
TCGACAAGCGTGTGATTGAGAAGTTCGAGAAGGAGGCGGCTGAGTTGGGA
AAGTCTTCTTTCAAATACGCCTGGGTGCTGGACAAGCTTAAGGCCGAGCG
TGAGCGTGGGATCACCATCGATATCGCCCTCTGGAAGTTTGAGTCCCCCA
AGTACTACTTCACCATCATCGACGCCCCTGGCCACCGAGACTTCATCAAG
AACATGATTACGGGGACCTCCCAGGCGGATGTGGCTATTTTGATCGTGGC
CTCCGGGACGGGTGAGTTTGAGGCTGGTATCGGCAAGGACGGGCAGACGC
GCGAGCATGCTTTGCTCGCTTTCACCCTGGGCGTAAAGCAGATGATCGTG
TGCGTGAACAAGATGGACGACTCCTCTGTCAACTACGGGGAAGCACGATT
CAACGAGATCAAGGAGGAAGTGTCCAACTACCTCAAGAAGGTAGGATACA
AGCCCGCAAAGGTCCCGTTCATCCCCATCTCCGGCTGGAACGGCGACAAC
ATGATCGACCGCTCCACTAACATGGCCTGGTACAAGGGGCCCACTCTCTT
GGAAGCCCTCGACAACATCAACCCGCCCAAGCGCCCTACGGACAAGCCCC
TCCGCCTCCCTCTGCAGGACGTGTACAAGATCGGCGGTATCGGCACCGTG
CCCGTAGGCCGAGTGGAGACGGGCGTGCTCAAGCCCGGCATGGTGGTGAC
CATCGCCCCCGCCATGGTGACCACGGAAGTCAAGTCCGTAGAGATGCACC
ACGAGTCGATGGCGGAGGCTCTGCCCGGCGACAACGTGGGTTTCAACGTG
AAGAACGTGTCTGTGAAGGAGATCCGCCGAGGATACGTGGCGGGAGACTC
CAAGAAGGACCCGCCCGCCGGCGCCGCCAATTTCGTGGCACAGGTCATCG
TTATGAACCACCCTGGCCAGATCCAGAATGGCTACTGCCCGGTGCTGGAT
TGCCACACGGCGCACGTCGCGTGCAAGTTCGCGGAGATTACCGAGAAGAT
CGACCGACGCACAGGTGCGGTCACCGAGGCCAACCCCAAGTTCGTGCAGT
CCGGTGACGGCTGCTACGTGACCTTGGAGCCCTCTAAGCCCATGGTGGTG
GAGTCTTTCACCGAATACCCTCCTCTGGGCCGTTTCGCCGTGCGTGACAT
GCGACAGACTGTGGCGGTCGGTGTGGTAAAGAGCGTGGATAAGAAGGCAA
CGGACTCGAAGAAGGGTGGTGCCAAGAAGAAGTGA
back to top
Synonyms
Publications