rna9203, rna9203 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9203
Unique Name	rna9203
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4982
Alignment location	KK037252.1:98077..98928 +

Link to JBrowse

Properties


Property Name	Value
Product	Alanyl-tRNA synthetase, class IIc
Orig transcript id	gnl\|cribi\|Naga_100019g68.524.mrna
Orig protein id	gnl\|cribi\|Naga_100019g68.524
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:98077..98928 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100019g68	gene8927	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9203	rna9203-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21502.1	cds9173	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:98077..98928+
coding sequence from alignment at KK037252.1:98077..98928+

mRNA sequence

>rna9203 ID=rna9203|Name=rna9203|organism=Nannochloropsis gaditana|type=mRNA|length=4982bp
CGCACTTACGAGCTTCTGAAGGGCTGTGCACGATCCGTCAAGGTAAATGT
TGCAGACTAAAAGATTTCCTCCACATTCTTTACCATATTTTCATCCCTCA
AGTAGTATGATTTGATTTGTGGCCCTAGTCCTTCATCCTAGAATGGCTTG
GGTCTTCTACTCCTGCCTTGTCCTTCTATGTGTCATTTCAGTGCCTTCTG
CGAAGAGTTTTTTGCCCCGCAATGCCTTCCTTCAATCTGGCACATCTAGT
ATTTATGCTGGAAAAGCAGTGAATAAAAATGAGCCGCAATCTCGCTTGGC
AAAATTACTGGGCGGTAGCTTCTTCAAAGCAGGAAAACAGAATCTTGAAT
CTGGTGTCGGCTTTCAGTCGTCACCTCTGAGTCGGCGACATTTTCATCTT
TCGTCTGTAGACGGAGACCTGAAAGACTCATTGAATGATTTTCAGCCACA
CAATCGTATTACTCTGGATTTCTTTGGCCGTATCTTGCAGAGTGCTGCTG
CTGAGGAGTTTCATCACGACGATACATTATTCCGTGACGCCCTCGACACT
CAATGGGCGTTGCTGCAGGGAAGGTCCAGCGAAGCCGCTCCTTTCATAAT
CTGTAGCCCCTATAAAAACGGCCGAGATGCTTTGATTTCTTTGCGCAGAG
ATTTGGAAGAAGGATGCTGTCAAACTGTGCACAGCGACCGCCTAAGTGAC
GCTATATGCTTCGTGGTCCACGCTTCCTACGATTACTGCACGTATTTGCT
ACGGCAACCGCACCCATTAGTCAGTCACGTGGAGCCACTGCCTGCCAAGC
TGAAGATCAGTCCGGGACTCCTTGGCCCCTACATGACCCCACGTCCTGAC
CGCTCAAACGATTGTGCCAAAGGAAGGAGTCAGGGACGATCCCAATACTC
CAGAACATCAACCGAAACTTCGCATAATCTGTGTGCGGAGTCCTCCGCAA
TATCAACAGGCCCCAGGACCTTGCCAGAAGTGGGGCCCGAGTTGATTTTG
ACTTTTGCGCCGACGGCCAAAATGAGCCAACACCTACGCTTTATTATGTC
CCGGTGGCGGAAGATCCTTCCGAAATTAAAACATTTGCCCACAGATGGAT
TCCATAGGCATTTCTGGACGGCGATGAGTCTCAACCCAAGCGGGCCTGTA
GGTGGAGAAAATAGTCATCCCGGGCCCCCCGCCTCACGTTCCGCAGTCGA
CCCAGACACATCCTCTTACGATTCATCAAGCGTTCGTACATGGGATGCTG
TCTTGGCCCGTCTACAGCGCCTGCACGAGACAGAGAAATATTGCAATTTT
GATGCTGTCCACTTCCGCGACGAAACTCCCACGCACCTGGTCCTTGGGGG
CCTCCTGGCTGGCATGCCCCCCGCCGAGGGTGCCGAGGACGAAGCAGACA
GACAAGCGTGCTTGGAAGGGCTCGTGGCATTCATCGCCTCGCATCCAGAC
ATCCTCTCCATCCAAACCCGGGCCAGGTATGCGCTTCAGAATGATCAGGC
AACTTGGATCATCCAGAGCGGCGACGAAGCCACGCATGCGCGGCCATTGT
GGGACCTTGGGCTCACAGGGAAAGGCGAGCTTATTGGCGTGGCTGACACG
GGGCTCGATGACGAGTCTTGCTTCTTCTACGACAACGCATTGGGCCAGGT
CGCGAGAAGCTCGTGGGAGGCGCCTTTCACGGACATGACGCAGCGGAAGG
TTGTGCAGTATGTGAGCTTCGTGGACGGTGGGGATCTAGTGGAGGGCCAC
GGAACACACGTCTCAGGCTCATTGGCCGGTGTTGTTGAGCCGAGAAATGA
AGGGCGACGCGGTCACTTCTGCGCAGAGGGAGAGACCCTCGCATGCACGG
GAATGTGCCTGAGCGCCCCCACTTGCCAGCTGAAAGATTACGGCTATGTC
TCCTGCCAAGACTGGCTGCAAGATGGGCATTGCGATGCCTGGTTTGCCTG
TCCACTGTACGGATGCGACGGCGGGGATTGCGTCGGCTTGGCCTGCAATC
CCAATCCGGAGGAAGCCCTGATGGCAAATCAAGGGATGGCGCGGGAGGCG
AAAATCGCTTTCTTTGATATCGCCGACGAGCACGGGAACCTTTCTACACC
CTCTGACTTTCACCGCATGCTCTTTCCCCCGGCTTACGAGGCTGGAGCTC
GGATCCACTCAAATTCATGGGGAATCAATGTGGGAGAATACTTGTTTGAC
GACATGAAAATTGACCAATATGCCTACGAGCACCAGGACTTCCTTATCAT
ATACGCTGCCGGAAATTACGGCGAAGATGGGTTTCACTCGATCGGTTCAC
CCGGCAATACTAAAAATGTACTCACCGTGGGAGCGACTGAGAGCGGCCCG
GAGCGTCAGAGCCAAGACCGGGATTACATCGCCAAGTTCTCCTCCCGAGG
CCCTACCAAGGACGGTCGCCTCAAGCCAGACATCGTTTCCCCTGGCTCCT
ACATTTACTCGGCGCGCTCTGCTGGTTATAACAATGGAGGCACCTGTAGC
TATGTAGCCATGGCAGGAACCTCGATGGCGGCCCCCGTGGTGGCTGGGGC
AGCTGCTCTCATCCGTCAGTATTTCAAGGAGGGGCACTACTATGCCGCCT
TGCGGGCACGAGGAGAGTGTGGCCCACCCTACCAGTGCGAAGACGTGATC
CAGCCATCGGCACCTCTTCTGAAGGCTCTGTTTGTGAACTCTGCAGTGCC
CGTCAAAGCTCTTCGGCTAGAGGATGAGCTCGTGGCGCTGTACCACCCTC
CTGACCTGGCGCAAGGACACGGGCGGATTAAGATCGACGCCGTCTTGGAT
TTTTACGGACACTTCTCCTTGTTCTTTGCAGACAAACAATCACTGGCATC
CGGAGAATCTCGGACCTACTACTTTCAAATCGCTGCTGCGTCCAATGCCT
CGTCTGTGCCCCTGCAAGTGACCCTGTGCTGGATCGACCCGCCAAACTCC
TTCACTGCCCAAAAACAACTGCTTCACGACCTGGACCTTCACGTGCTCGA
CCCCTCGGGCGTCCTCTTCTATCCCAATGGCTTGCCAGGGCCTGACCGCA
AAAATAACGTGGAAAAGATAGTGGTCGTGGAGCCCCTACCGGGGGGCGTC
TACACATTGGTGGTAACGGCTGGAGAGCTCTCGGAAGCAGAAGAGCAGCT
ATATGCCCTTGTGGCCACAGGAGATGGGCGAGCGCTCACAGAGGAGTCAG
TCTGGTATTTGAAGAAGGCAGACAATCAGAAATTTATTGAGTTTGGTGAC
AACGGCTCTAGTATGAAAGCTCATGCTTTTCGGACCTCGAACATTGCAGA
GAATGAGCCAGCTCAAGATCTCCCAGAAATGCTTACAATGCCAGTAAAAG
AGACGTTGCACGTCTGTTACAAAGACGGCTTCGAAAACGCGGCGGCTATG
CTTGCTCGAACAGAATCAAAATCTCGTCAACCCCATGGACAGAATGAAAA
CAGCGCAAAAGACAAAGCCACTTCGGCCGCTTTCGGTGATATGGCAACCT
CTGCTACTGCAGGATTGGGTCGATCGGAAGCTCTTTGTGAGCACTTCGAC
ATCATTTTTAGCAACCGGTCGATCAAGTGCCCACCACAAGCACTTCACGA
AGCTCAAAAAGTCTGCCTTGGCGCGAAATGCCACCACACACAATGTGGCG
TTTCCCTAGAGGAGGCCATGTCTGCTGGAGACGCCGTGCGGTATAAAGTG
TCCCTGCGGCTGATCCTTCGAGGTCTAGAACTAAAAGATTTTGAGGATCC
GGCTCTCAGCTTTGACTTGCGCCGAGCACTGGGCAGCTGGTTGGATGTAG
ACGCGAGTGAGATACAGCTGCTTCATGTGAACGGATACAGGTTGGAGGTA
GAGGAGGAGGAGCAGGAGGAGGTTGAAGATGGTGACGCCATGCCAGGAAG
GGGTAAGGCTCAGCACGATTTGTCTATGGGTACGATAAGACAGCGCTTTC
AGCGACAATTGCAACAAAAACACCAGAAAAGGGAAAGGGAGCAACAAGGA
TTCCCTGGTCTGCGACTTTTCAAGTCTCCCCTCCACCCCATGCACGGCGT
CAGCATCGGCGTAGACGTCAAAGCCCCGGAAGGTCAAGCGCAAAGCAACA
AGATCAGAGCGCAAATATCTGCATCGTACGGTCACCTCACCGATCACTTG
CACGACGCACTCTCACCGACATTGAGGCAAGCATTGGTATACGATGTGCA
GGGTCACGTCCACAGCTACCACGCGCTCCCGAGTGGCGTGGCTTTTGAGG
AAAGGGCCGTACCAGACAAAGAGGAACGACGATCGCCACGTGAATATGAA
CGAGAGAGGGACTTAGATGACGAGGGACACATGATGGCCTGGCAGGTATC
TTCCGGCAGTGGGTGGACTTCGATGGGCGGCGTGCTTCTTTTGTTTTTGT
GCGCCATGGTATGTATCCATCACCATCGGAGGCGCGATGCAATGGTGACA
TCTATCTCGCACGTAGCCACAGGATACGTGGGATATCGCTCTTCAGGCTC
CAGGGCTGTGAGTAAGACAGCTGCGACTTGTTTCAATGAGAACAGCAACG
CGCAGGGGGAAGAGACGAAGAGAGCAGATACAGAGGGTGAGCAGCAAGAT
TCTACAGATGAAAGACTAGACGAAAGCCCCTCATGTACGCGTAAGGTATT
TATGCTAGGTTCACACTGGCTCGGTGAACGTGGAGGAAAGGAAGAGGTAT
TGCGCCAGAAGGTGAGTGCCATTCTGGATGGCGAATTCGAGTTGACGCAA
GCCAGATCAAAAGGCTGGAACGAAAAGCAGGGCGATTACTCCGAGGATGC
TATGTAAAGATCCTAGAGCAGCTTTTTAAGGTGTTAAGTATAACAAGCCC
TTGCACGTAAATAAAACAAGTAACTACGTCGATTGGAAGGATTAAATCTC
TATGAGATCGACTGCCACATGTCGATAGACATGTGTTTTCTCTACATCCT
TGCTTTGAAAAAAAATAAAAGATCTTATCCCC

protein sequence of rna9203

>rna9203-protein ID=rna9203-protein|Name=rna9203|organism=Nannochloropsis gaditana|type=polypeptide|length=283bp
MPGTSYPTTQRRYLNDTYLYDISSTILAVEPMPPDTSAGSNKMPYFGLVI
AETVFHPQGGGQPSDVGRVVGENGVTFFVDNVRVGENAIIYHYGTFQHEM
SENEDGARCIPFRSGEKVKLEIDAARRRLHARLHSAGHALDVAVLRLGLE
LRPTKGYHFEDHPFVEYLGRLPADKGSSERLIEALTLKIQELIEEDIATE
LYSTSKAEAASILSGGVKDVAHFPEGAQVRLVSVGGNICPCGGTHVKSTK
ELRGVEITRIKTKKNVTKISYRISKEGKERQIS

mRNA from alignment at KK037252.1:98077..98928+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9203 ID=rna9203|Name=rna9203|organism=Nannochloropsis gaditana|type=mRNA|length=852bp|location=Sequence derived from alignment at KK037252.1:98077..98928+ (Nannochloropsis gaditana)
ATGCCCGGTACCTCCTATCCTACGACGCAACGCCGGTACTTGAATGATAC
CTATCTCTACGACATATCTTCCACAATTTTAGCTGTGGAGCCCATGCCCC
CGGACACCTCAGCTGGCAGCAACAAAATGCCATATTTTGGCCTTGTGATA
GCCGAAACAGTTTTTCATCCTCAAGGGGGTGGTCAACCATCAGATGTCGG
GCGTGTGGTTGGGGAAAATGGCGTGACCTTTTTCGTCGATAACGTGCGTG
TGGGAGAGAACGCGATTATTTATCACTACGGCACTTTTCAACATGAAATG
AGCGAGAATGAAGATGGCGCGCGCTGTATTCCATTCAGATCTGGCGAGAA
AGTGAAGCTAGAGATTGATGCTGCCCGGCGAAGGCTTCACGCGCGCCTCC
ATTCGGCAGGGCATGCTTTAGACGTGGCTGTGCTCCGGCTGGGCTTGGAA
TTACGGCCCACAAAGGGATATCATTTCGAGGATCATCCATTTGTGGAGTA
TTTAGGAAGGTTGCCTGCTGATAAAGGGTCATCAGAAAGACTTATCGAGG
CTTTGACCTTGAAAATACAAGAACTCATCGAGGAAGACATTGCGACTGAA
CTGTACTCCACTTCCAAGGCCGAAGCGGCGAGTATCCTGTCAGGTGGAGT
GAAGGACGTGGCTCATTTCCCTGAAGGGGCACAAGTGCGTCTGGTCTCTG
TGGGTGGGAATATATGCCCATGTGGAGGGACACATGTAAAGAGCACTAAG
GAGCTAAGAGGAGTGGAGATAACCAGGATCAAAACCAAGAAAAATGTCAC
AAAGATTAGCTATAGGATAAgtaaagagggaaaagagagacagATATCAT
AA

Coding sequence (CDS) from alignment at KK037252.1:98077..98928+

>rna9203 ID=rna9203|Name=rna9203|organism=Nannochloropsis gaditana|type=CDS|length=852bp|location=Sequence derived from alignment at KK037252.1:98077..98928+ (Nannochloropsis gaditana)
ATGCCCGGTACCTCCTATCCTACGACGCAACGCCGGTACTTGAATGATAC
CTATCTCTACGACATATCTTCCACAATTTTAGCTGTGGAGCCCATGCCCC
CGGACACCTCAGCTGGCAGCAACAAAATGCCATATTTTGGCCTTGTGATA
GCCGAAACAGTTTTTCATCCTCAAGGGGGTGGTCAACCATCAGATGTCGG
GCGTGTGGTTGGGGAAAATGGCGTGACCTTTTTCGTCGATAACGTGCGTG
TGGGAGAGAACGCGATTATTTATCACTACGGCACTTTTCAACATGAAATG
AGCGAGAATGAAGATGGCGCGCGCTGTATTCCATTCAGATCTGGCGAGAA
AGTGAAGCTAGAGATTGATGCTGCCCGGCGAAGGCTTCACGCGCGCCTCC
ATTCGGCAGGGCATGCTTTAGACGTGGCTGTGCTCCGGCTGGGCTTGGAA
TTACGGCCCACAAAGGGATATCATTTCGAGGATCATCCATTTGTGGAGTA
TTTAGGAAGGTTGCCTGCTGATAAAGGGTCATCAGAAAGACTTATCGAGG
CTTTGACCTTGAAAATACAAGAACTCATCGAGGAAGACATTGCGACTGAA
CTGTACTCCACTTCCAAGGCCGAAGCGGCGAGTATCCTGTCAGGTGGAGT
GAAGGACGTGGCTCATTTCCCTGAAGGGGCACAAGTGCGTCTGGTCTCTG
TGGGTGGGAATATATGCCCATGTGGAGGGACACATGTAAAGAGCACTAAG
GAGCTAAGAGGAGTGGAGATAACCAGGATCAAAACCAAGAAAAATGTCAC
AAAGATTAGCTATAGGATAAgtaaagagggaaaagagagacagATATCAT
AA

Synonyms

Publications