EWM21502.1, cds9173 (CDS) Nannochloropsis gaditana

Overview
NameEWM21502.1
Unique Namecds9173
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:98077..98928 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21502.1
ProductAlanyl-tRNA synthetase, class IIc
Orig transcript idgnl|cribi|Naga_100019g68.524.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:98077..98928 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
GO:0006419alanyl-tRNA aminoacylation
GO:0043039tRNA aminoacylation
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0004813alanine-tRNA ligase activity
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR018163Thr/Ala-tRNA-synth_IIc_edit
IPR009000Transl_B-barrel
IPR018165Ala-tRNA-synth_IIc_core
IPR018164Ala-tRNA-synth_IIc_N
IPR012947tRNA_SAD
Homology
BLAST of EWM21502.1 vs. NCBI_GenBank
Match: gi|585101732|gb|EWM21502.1| (Alanyl-tRNA synthetase, class IIc [Nannochloropsis gaditana])

HSP 1 Score: 581.252 bits (1497), Expect = 0.000e+0
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 0
Query:    1 MPGTSYPTTQRRYLNDTYLYDISSTILAVEPMPPDTSAGSNKMPYFGLVIAETVFHPQGGGQPSDVGRVVGENGVTFFVDNVRVGENAIIYHYGTFQHEMSENEDGARCIPFRSGEKVKLEIDAARRRLHARLHSAGHALDVAVLRLGLELRPTKGYHFEDHPFVEYLGRLPADKGSSERLIEALTLKIQELIEEDIATELYSTSKAEAASILSGGVKDVAHFPEGAQVRLVSVGGNICPCGGTHVKSTKELRGVEITRIKTKKNVTKISYRISKEGKERQIS 283
            MPGTSYPTTQRRYLNDTYLYDISSTILAVEPMPPDTSAGSNKMPYFGLVIAETVFHPQGGGQPSDVGRVVGENGVTFFVDNVRVGENAIIYHYGTFQHEMSENEDGARCIPFRSGEKVKLEIDAARRRLHARLHSAGHALDVAVLRLGLELRPTKGYHFEDHPFVEYLGRLPADKGSSERLIEALTLKIQELIEEDIATELYSTSKAEAASILSGGVKDVAHFPEGAQVRLVSVGGNICPCGGTHVKSTKELRGVEITRIKTKKNVTKISYRISKEGKERQIS
Sbjct:    1 MPGTSYPTTQRRYLNDTYLYDISSTILAVEPMPPDTSAGSNKMPYFGLVIAETVFHPQGGGQPSDVGRVVGENGVTFFVDNVRVGENAIIYHYGTFQHEMSENEDGARCIPFRSGEKVKLEIDAARRRLHARLHSAGHALDVAVLRLGLELRPTKGYHFEDHPFVEYLGRLPADKGSSERLIEALTLKIQELIEEDIATELYSTSKAEAASILSGGVKDVAHFPEGAQVRLVSVGGNICPCGGTHVKSTKELRGVEITRIKTKKNVTKISYRISKEGKERQIS 283          
BLAST of EWM21502.1 vs. NCBI_GenBank
Match: gi|553196103|ref|XP_005856270.1| (alanyl-trna synthetase, partial [Nannochloropsis gaditana CCMP526] >gi|422292784|gb|EKU20086.1| alanyl-trna synthetase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 475.322 bits (1222), Expect = 8.673e-169
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
Query:   51 AETVFHPQGGGQPSDVGRVVGENGVTFFVDNVRVGENAIIYHYGTFQHEMSENEDGARCIPFRSGEKVKLEIDAARRRLHARLHSAGHALDVAVLRLGLELRPTKGYHFEDHPFVEYLGRLPADKGSSERLIEALTLKIQELIEEDIATELYSTSKAEAASILSGGVKDVAHFPEGAQVRLVSVGGNICPCGGTHVKSTKELRGVEITRIKTKKNVTKISYRISKEGKERQIS 283
            AETVFHPQGGGQPSDVGRVVGENGVTFFVDNVRVGENAIIYHYGTFQHEMSENEDGARCIPFRSGEKVKLEIDAARRRLHARLHSAGHALDVAVLRLGLELRPTKGYHFEDHPFVEYLGRLPADKGSSERLIEALTLKIQELIEEDIATELYSTSKAEAASILSGGVKDVAHFPEGAQVRLVSVGGNICPCGGTHVKSTKELRGVEITRIKTKKNVTKISYRISKEGKERQIS
Sbjct:    1 AETVFHPQGGGQPSDVGRVVGENGVTFFVDNVRVGENAIIYHYGTFQHEMSENEDGARCIPFRSGEKVKLEIDAARRRLHARLHSAGHALDVAVLRLGLELRPTKGYHFEDHPFVEYLGRLPADKGSSERLIEALTLKIQELIEEDIATELYSTSKAEAASILSGGVKDVAHFPEGAQVRLVSVGGNICPCGGTHVKSTKELRGVEITRIKTKKNVTKISYRISKEGKERQIS 233          
BLAST of EWM21502.1 vs. NCBI_GenBank
Match: gi|470437770|ref|XP_004339020.1| (threonine/alanine tRNA ligase subfamily protein [Acanthamoeba castellanii str. Neff] >gi|440795895|gb|ELR17007.1| threonine/alanine tRNA ligase subfamily protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 175.252 bits (443), Expect = 4.367e-50
Identity = 111/272 (40.81%), Postives = 152/272 (55.88%), Query Frame = 0
Query:    9 TQRRYLNDTYLYDISSTILAVEPMPP--DTSAGSNKMPYFGLVIAETVFHPQGGGQPSDVGRVVGENGVTFFVDNVRVG-ENAIIYHYGTFQHEMSENEDGARCIPFRSGEKVKLEIDAARRRLHARLHSAGHALDVAVLRLGLE--LRPTKGYHFEDHPFVEYLGR-LPADKGSSERLIEALTLKIQELIEEDIATELYSTSKAEAASILSGGVKDVAHFPEGAQVRLVSVGGNI-CPCGGTHVKSTKELRGVEITRIKTKKNVTKISYRI 273
            T++ Y  DTY +  ++ ++ V   PP   ++AG++   YF +V+  T+FHPQGGGQP D G V    GV F V  VR   E+ +I H GTF    +          F++G++V+L+ID A+RRLHARLHSAGH LD AV  L  E  L P KGYHF D P+VEY G  +PADK  S   ++ L  +   LI E     +      E    L G   D    P    VR+V+V   + CPCGGTHV++T E+  + I ++  KK V +ISY +
Sbjct:    6 TEQAYWEDTYRFRDTAHVVQVAEHPPPRGSAAGAS---YFAVVLDRTIFHPQGGGQPFDTGVVASAAGVKFTVSEVRANREDGVIQHIGTFAEAGTT---------FQAGDEVELQIDEAKRRLHARLHSAGHLLDKAVANLFPEYNLIPDKGYHFADAPYVEYKGTFVPADKRQS--ALKRLEDECNRLIAEGSEVTVQVVHSKEEVERLCGSASDSGANPT-EPVRVVTVCAPLGCPCGGTHVQNTGEIGRIAIPKMSAKKGVVRISYTL 262          
BLAST of EWM21502.1 vs. NCBI_GenBank
Match: gi|300681550|emb|CBH32647.1| (alanyl-tRNA synthetase, putative, expressed [Triticum aestivum] >gi|669027166|emb|CDM80421.1| unnamed protein product [Triticum aestivum])

HSP 1 Score: 172.94 bits (437), Expect = 3.085e-49
Identity = 106/269 (39.41%), Postives = 151/269 (56.13%), Query Frame = 0
Query:    9 TQRRYLNDTYLYDISSTILAVEPMPPDTSAGSNKMPYFGLVIAETVFHPQGGGQPSDVGRVVGE--NGVTFFVDNVRVGENAIIYHYGTFQHEMSENEDGARCIPFRSGEKVKLEIDAARRRLHARLHSAGHALDVAVLRLGLELRPTKGYHFEDHPFVEYLGRLPADKGSSERLIEALTLKIQELIEEDIATELYSTSKAEAASILSGGVKDVAHFPEGAQVRLVSVGGNI-CPCGGTHVKSTKELRGVEITRIKTKKNVTKISYRIS 274
            T+  Y +D +     +T+L++         G  +     +V+  TVFHPQGGGQP+D G +V     G  F V++VRV ++ +++HYG F       ED A       G+ V LEIDA RR+L++RLHSAGH LD  +  LGL L P KGYHF D P VEY G +PAD+   +++   L  +  ELI +  +  L S    E A+ L GG    ++ P+ +  R+V  G    CPCGGTHV    ++  +++T I+ KK VTK+SY IS
Sbjct:    8 TRLAYFDDMWALRAPATVLSLH-----QEEGGRR----AVVLDATVFHPQGGGQPADTGAIVSAAGTGARFLVEDVRV-KDGVVFHYGRF-------EDAAAGEELSQGQSVSLEIDAERRKLNSRLHSAGHLLDSCMTNLGLHLEPGKGYHFPDGPSVEYKGVVPADQLQDKKI--QLEKEANELISKG-SKVLVSVFPYEEAAKLCGGALP-SYIPQDSTPRIVKFGNYPGCPCGGTHVADIADIGNLKVTNIRVKKGVTKVSYSIS 255          
BLAST of EWM21502.1 vs. NCBI_GenBank
Match: gi|326502278|dbj|BAJ95202.1| (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 171.785 bits (434), Expect = 7.681e-49
Identity = 105/269 (39.03%), Postives = 150/269 (55.76%), Query Frame = 0
Query:    9 TQRRYLNDTYLYDISSTILAVEPMP--PDTSAGSNKMPYFGLVIAETVFHPQGGGQPSDVGRVVGENGVTFFVDNVRVGENAIIYHYGTFQHEMSENEDGARCIPFRSGEKVKLEIDAARRRLHARLHSAGHALDVAVLRLGLELRPTKGYHFEDHPFVEYLGRLPADKGSSERLIEALTLKIQELIEEDIATELYSTSKAEAASILSGGVKDVAHFPEGAQVRLVSVGGNI-CPCGGTHVKSTKELRGVEITRIKTKKNVTKISYRIS 274
            T+  Y +D +     + +L+V   P  P    G        +V+  T+FHPQGGGQP+D G +V  +   F V++VRV ++ +++HYG F     E+ DG        G+ V +EIDA RR+L++RLHSAGH LD  +  LGL + P KGYHF D PFVEY G +P D+    ++   L  +  ELI +  A  L S    E A+ L GG    ++  E +  R+V  G    CPCGGTHV    ++  +++T I+ KK VTK+SY IS
Sbjct:    8 TRLAYFDDMWALRAPAAVLSVHQAPGCPQEEGGRR-----AVVLDATIFHPQGGGQPADTGVIV--SAARFLVEDVRV-KDGVVFHYGRF-----EDADGEE---LSQGQSVSMEIDADRRKLNSRLHSAGHLLDSCMTNLGLHMEPGKGYHFPDGPFVEYKGVVPTDQLQDTKI--QLEKEANELISKG-AKVLVSVFPYEEAAKLCGGALP-SYISEDSTPRIVKFGDCPGCPCGGTHVADITDIGNLKVTNIRVKKGVTKVSYSIS 256          
BLAST of EWM21502.1 vs. NCBI_GenBank
Match: gi|1000816932|gb|AML47757.1| (putative alanyl-tRNA synthase [Triticum aestivum] >gi|1092917145|gb|AOZ21501.1| putative alanyl-tRNA synthetase [Triticum aestivum])

HSP 1 Score: 168.703 bits (426), Expect = 1.317e-47
Identity = 105/269 (39.03%), Postives = 153/269 (56.88%), Query Frame = 0
Query:    9 TQRRYLNDTYLYDISSTILAVEPMPPDTSAGSNKMPYFGLVIAETVFHPQGGGQPSDVGRVVGENGV--TFFVDNVRVGENAIIYHYGTFQHEMSENEDGARCIPFRSGEKVKLEIDAARRRLHARLHSAGHALDVAVLRLGLELRPTKGYHFEDHPFVEYLGRLPADKGSSERLIEALTLKIQELIEEDIATELYSTSKAEAASILSGGVKDVAHFPEGAQVRLVSVGGNI-CPCGGTHVKSTKELRGVEITRIKTKKNVTKISYRIS 274
            T+  Y +D +    ++T+L++         G  +     +V+  TVFHPQGGGQP+D G +V  +G    F V++VRV ++ +  HYG F+   + +  GA    F  G+ V LE+DA RR+L++RLHSAGH LD  +  LGL L P KGYHF D P VEY G +PAD+   +++   L  +  ELI +  +  L S    E A+ L GG    ++  + +  R+V  G    CPCGGTHV    ++  V++T I+ KK VTK+SY IS
Sbjct:    8 TRLAYFDDMWALRATTTVLSLH-----QEEGGRR----AVVLDATVFHPQGGGQPADTGVIVSASGAGARFLVEDVRV-KDGVALHYGRFEDAAAGDGCGAD---FTQGQSVTLEVDAERRKLNSRLHSAGHLLDSCMTNLGLHLEPGKGYHFPDGPSVEYKGVVPADQLQDKKI--QLEKEANELISKG-SKVLVSVFPYEEAAKLCGGALP-SYILQDSTPRIVKFGNYPGCPCGGTHVADIADIGNVKVTNIRVKKGVTKVSYSIS 259          
BLAST of EWM21502.1 vs. NCBI_GenBank
Match: gi|1149730652|ref|XP_020190630.1| (uncharacterized protein LOC109776404 [Aegilops tauschii subsp. tauschii] >gi|383100771|emb|CCG48002.1| alanyl-tRNA synthetase, putative, expressed [Triticum aestivum] >gi|475550877|gb|EMT11535.1| Alanyl-tRNA synthetase [Aegilops tauschii])

HSP 1 Score: 167.933 bits (424), Expect = 2.364e-47
Identity = 103/268 (38.43%), Postives = 152/268 (56.72%), Query Frame = 0
Query:    9 TQRRYLNDTYLYDISSTILAVEPMPPDTSAGSNKMPYFGLVIAETVFHPQGGGQPSDVGRVV-GENGVTFFVDNVRVGENAIIYHYGTFQHEMSENEDGARCIPFRSGEKVKLEIDAARRRLHARLHSAGHALDVAVLRLGLELRPTKGYHFEDHPFVEYLGRLPADKGSSERLIEALTLKIQELIEEDIATELYSTSKAEAASILSGGVKDVAHFPEGAQVRLVSVGGNI-CPCGGTHVKSTKELRGVEITRIKTKKNVTKISYRIS 274
            T+  Y  D +     +T+L++         G  +     +V+  TVFHPQGGGQP+D G +V    G  F V++VRV ++ +++HYG F+   + +  GA    F  G+ V LE+DA RR+L++RLHSAGH LD  +  LGL L P KGYHF D P VEY G +PAD+   +++   L  +  ELI +  +  L S    E A+ L GG    ++  + +  R+V  G    CPCGGTHV    ++  +++T I+ KK VTK+SY I+
Sbjct:    8 TRLAYFEDMWALRAPATVLSLH-----QEEGGRR----AVVLDATVFHPQGGGQPADTGVIVSASGGARFLVEDVRV-KDGVVFHYGRFEDAAAGDGCGAE---FTKGQSVTLEVDAERRKLNSRLHSAGHLLDSCMTNLGLHLEPGKGYHFPDGPSVEYKGVVPADQLQDKKI--QLEKEANELILKG-SKVLVSVFPYEEAAKLCGGALP-SYISQDSTPRIVKFGDYPGCPCGGTHVADIADIGNLKVTNIRVKKGVTKVSYSIN 258          
BLAST of EWM21502.1 vs. NCBI_GenBank
Match: gi|326491881|dbj|BAJ98165.1| (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 167.548 bits (423), Expect = 2.574e-47
Identity = 103/267 (38.58%), Postives = 149/267 (55.81%), Query Frame = 0
Query:    9 TQRRYLNDTYLYDISSTILAVEPMPPDTSAGSNKMPYFGLVIAETVFHPQGGGQPSDVGRVVGENGVTFFVDNVRVGENAIIYHYGTFQHEMSENEDGARCIPFRSGEKVKLEIDAARRRLHARLHSAGHALDVAVLRLGLELRPTKGYHFEDHPFVEYLGRLPADKGSSERLIEALTLKIQELIEEDIATELYSTSKAEAASILSGGVKDVAHFPEGAQVRLVSVGGNI-CPCGGTHVKSTKELRGVEITRIKTKKNVTKISYRIS 274
            T+  Y +D +     + +L+V         G  +     +V+  T+FHPQGGGQP+D G +V  +   F V++VRV ++ +++HYG F     E+ DG        G+ V +EIDA RR+L++RLHSAGH LD  +  LGL + P KGYHF D PFVEY G +P D+    ++   L  +  ELI +  A  L S    E A+ L GG    ++  E +  R+V  G    CPCGGTHV    ++  +++T I+ KK VTK+SY IS
Sbjct:    8 TRLAYFDDMWALRAPAAVLSVH-----QEEGGRR----AVVLDATIFHPQGGGQPADTGVIV--SAARFLVEDVRV-KDGVVFHYGRF-----EDADGEE---LSQGQSVSMEIDADRRKLNSRLHSAGHLLDSCMTNLGLHMEPGKGYHFPDGPFVEYKGVVPTDQLQDTKI--QLEKEANELISKG-AKVLVSVFPYEEAAKLCGGALP-SYISEDSTPRIVKFGDCPGCPCGGTHVADITDIGNLKVTNIRVKKGVTKVSYSIS 250          
BLAST of EWM21502.1 vs. NCBI_GenBank
Match: gi|1191679934|gb|OTG31897.1| (putative alanine-tRNA ligase [Helianthus annuus])

HSP 1 Score: 165.622 bits (418), Expect = 1.541e-46
Identity = 94/230 (40.87%), Postives = 139/230 (60.43%), Query Frame = 0
Query:   48 LVIAETVFHPQGGGQPSDVGRV--VGENGVTFFVDNVRVGENAIIYHYGTFQHEMSENEDGARCIPFRSGEKVKLEIDAARRRLHARLHSAGHALDVAVLRLGLE-LRPTKGYHFEDHPFVEYLGRLPADKGSSERLIEALTLKIQELIEEDIATELYSTSKAEAASILSGGVKDVAHFPEGAQVRLVSVGGNI-CPCGGTHVKSTKELRGVEITRIKTKKNVTKISYRI 273
            L++  TVFHPQGGGQPSD G +  V  +   F V +VR   NA++YHYG F+    + E G + +         L +D ++R+L++RLHSAGH LDV + ++GL  L+P K YHF D P+VEY G++P  +  S+  ++ L L+   LI   +   + +    E AS+L GG     + P+G+  R+V +G    CPCGGTHV +  +L  V++T++KTKK VTK+ Y I
Sbjct:   36 LILDSTVFHPQGGGQPSDTGFITDVSSSRFNFIVQDVR-SRNAVVYHYGVFEKPAEDLEGGVQVV---------LSVDESKRKLYSRLHSAGHLLDVCLPKVGLSHLKPGKAYHFPDGPWVEYEGKVPQAELQSK--MQELELEANNLISRGMKVSV-AVYPYEEASMLCGGALP-EYIPKGSTPRIVKLGDFPGCPCGGTHVSNVSDLVNVKVTQMKTKKGVTKVYYTI 251          
BLAST of EWM21502.1 vs. NCBI_GenBank
Match: gi|902157345|gb|KNA06115.1| (hypothetical protein SOVF_184040 [Spinacia oleracea])

HSP 1 Score: 165.236 bits (417), Expect = 2.759e-46
Identity = 95/238 (39.92%), Postives = 142/238 (59.66%), Query Frame = 0
Query:   48 LVIAETVFHPQGGGQPSDVGRVVGENG-VTFFVDNVRVGENAIIYHYGTFQHEMSENEDGARCIPFRSGEKVKLEIDAARRRLHARLHSAGHALDVAVLRLGLE-LRPTKGYHFEDHPFVEYLGRLPADKGSSERLIEALTLKIQELIEEDIATELYSTSKA--------EAASILSGGVKDVAHFPEGAQVRLVSVGGNI-CPCGGTHVKSTKELRGVEITRIKTKKNVTKISYRIS 274
            L++  TVFHPQGGGQPSD G +   N    F VD+VR  ++ I+YH+G      +EN +    +  + G KV L++D +RR L++RLHSAGH LD+++  +GLE   P K YHF D PFVEY G +P  +         L +K+++L E+D+  ++    K         EAA I  G + D  + P+G   R+V +G +  CPCGGTHV    E+R ++I++I++KK V+++ Y IS
Sbjct:   38 LILDSTVFHPQGGGQPSDTGFINDLNSSFKFVVDDVR-NKDGIVYHFGN-----AENLECIDQLMIKRGTKVYLDVDESRRNLNSRLHSAGHVLDISIRNVGLEHFEPGKAYHFPDGPFVEYKGTIPQTE---------LQIKLEQL-EKDVNAQISRGQKVFVGLFPYEEAADICGGRLPD--YIPKGNSPRIVKIGEHFGCPCGGTHVADISEIRSMKISKIRSKKGVSRVFYNIS 257          
The following BLAST results are available for this feature:
BLAST of EWM21502.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101732|gb|EWM21502.1|0.000e+0100.00Alanyl-tRNA synthetase, class IIc [Nannochloropsis... [more]
gi|553196103|ref|XP_005856270.1|8.673e-169100.00alanyl-trna synthetase, partial [Nannochloropsis g... [more]
gi|470437770|ref|XP_004339020.1|4.367e-5040.81threonine/alanine tRNA ligase subfamily protein [A... [more]
gi|300681550|emb|CBH32647.1|3.085e-4939.41alanyl-tRNA synthetase, putative, expressed [Triti... [more]
gi|326502278|dbj|BAJ95202.1|7.681e-4939.03predicted protein [Hordeum vulgare subsp. vulgare][more]
gi|1000816932|gb|AML47757.1|1.317e-4739.03putative alanyl-tRNA synthase [Triticum aestivum] ... [more]
gi|1149730652|ref|XP_020190630.1|2.364e-4738.43uncharacterized protein LOC109776404 [Aegilops tau... [more]
gi|326491881|dbj|BAJ98165.1|2.574e-4738.58predicted protein [Hordeum vulgare subsp. vulgare][more]
gi|1191679934|gb|OTG31897.1|1.541e-4640.87putative alanine-tRNA ligase [Helianthus annuus][more]
gi|902157345|gb|KNA06115.1|2.759e-4639.92hypothetical protein SOVF_184040 [Spinacia olerace... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9203rna9203Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications