rna9187, rna9187 (mRNA) Nannochloropsis gaditana

Overview
Namerna9187
Unique Namerna9187
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length595
Alignment locationKK037252.1:50881..52663 -

Link to JBrowse

Properties
Property NameValue
Productcircadian rna-binding protein chlamy 1 subunit c1
Orig transcript idgnl|cribi|Naga_100317g4.5832.mrna
Orig protein idgnl|cribi|Naga_100317g4.5832
GeneCRB1m
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:50881..52663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CRB1mgene8912Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9187rna9187-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21516.1cds9157Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9187 ID=rna9187|Name=rna9187|organism=Nannochloropsis gaditana|type=mRNA|length=595bp
AGGGAGGGAGGGGCCTGGGATTTGGATCCCGAGAGGTTCGAATGCCTGAG
CGCGGCGGAGGTGAAGGAGGTGCAGAGGGCCCTGAAGATTACCAAGGCAC
AGGTGGTGCTCGCTTACGAGTGCCTGAAGCTTCTGCAACGCCCCTCCCTC
CTCCTCCTCCCCCCTGCAAGTCCGACCGGGCCCCTGCTTGTCCTCGGTTC
ATCGGGAGGAAAGAGAGCGGGAGGGCGGGAGGGAGGAAGGGCGGAAGGGC
GGGAAAGAGGAAGGGCGGCACCGGTGCTTCCGCCTGATGGTGAAGCGCCG
GCTGGCCAGGGAAATAGGCGGCGACTTCGAGGGGAAAAAGGAAGAGCTGC
GTGCCTACCTGGACGAGAAATTCAGGGAACGAGTGGAGGAGCTGGAGGCG
GTATGTCGGAAGGCCGGGGTGTGGGAGGGGGGAAGAGAGGGAGCGGCGGG
GGGCGAGTGAGGGAGGATTTCGGCAAAACGGAGGCAGGGACGCGAGATAT
GATTGAATGGAAGCGAGAGATGTCCAAGGAAATGTGAAAGGACAGGGTAG
AAGGGATGCTTAAATTCTGCCAGTCGTTCTTCTCCTTCCCCTCGG
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protein sequence of rna9187

>rna9187-protein ID=rna9187-protein|Name=rna9187|organism=Nannochloropsis gaditana|type=polypeptide|length=333bp
MVTNGEHTPAEDEVQQEVQGEEQAQEEEVNAEEEDLAVPNGEGGGETESE
AVGTKRPREEEDEAKEGEHAEEATAETESTGKVEEGHAVVGQPSKKQATT
EARESSAETNAAFAEANQHQEVMDVAKDVVGRIIGKGGETIRDIQTRSGC
QCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGGPSVLADFPEVA
GNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKV
TITGAPKAVQSAREIIIAIMEQGVQALHQYSAGGGSSHAGGGFPSGGSGG
GRGRGGGGARLYPVPVDASTWAVEVPKSQWHRP
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mRNA from alignment at KK037252.1:50881..52663-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9187 ID=rna9187|Name=rna9187|organism=Nannochloropsis gaditana|type=mRNA|length=1783bp|location=Sequence derived from alignment at KK037252.1:50881..52663- (Nannochloropsis gaditana)
ATGGTGACCAACGGCGAACACACACCTGCTGAGGATGAAGTGCAGCAGGA
GGTGCAAGGCGAGGAGCAAGCGCAGGAAGAAGAAGTGAATGCAGAGGAGG
AGGACTTGGCTGTTCCCAACGGGGAAGGTGGTGGAGAGACTGAATCGGAG
GCGGTTGGGACCAAACGCCCACGAGAGGAAGAGGATGAAGCGAAAGAGGG
GGAGCATGCGGAAGAGGCGACAGCAGAGACAGAATCCACCGGAAAAGTAG
AAGAAGGTCATGCAGTCGTTGGACAACCGAGTAAGAAACAGGCGACCACC
GAGGCCCGAGAGTCGAGCGCGGAAACCAACGCCGCCTTTGCCGAAGCCAA
TCAACACCAGGAGGTGATGGACGTGGCCAAGGACGTGGTGGGTCGTATCA
TTGGGAAAGGGGGAGAAACGATCCGAGACATCCAAACGCGGAGTGGCTGC
CAGTGCGTGATCGATCAAAGCGTCCCCGACGGAGAGCCCCGGAAATTAAC
CATCGTGGGCAAGCCCGAGCACGTAAAGAACGCGCGGGCCATGATCGAAG
GCGTGATGGAGGGGGGCCCTTCCGTGCTGGCGGATTTTCCGGAAGTGGCG
GGCAATTCCAAGGCGACAGTGGACTGCCCGCGGGGCCTGGTGGGACGATT
GATCGGGAAGGGGGGAGACATCGTCAGGGAGATCCAGTACAAGAGCAAGG
CAGTCATCCAGATCAATCAGTCCCTCCCGCAGGACCAGCCCTGCAAGGTG
ACCATCACGGGGGCACCCAAAGCCGTGCAAAGTGGTAAGACATTCTTTTT
GCCTTCTCCTCGTCTCCTCTCCCTCCCCTTCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCCGATCCTAGTCCCTGACCTGTAACCCCCCTCCTTTC
TGCCTAGCACGTGAGATCATCATAGCCATCATGGAGCAGGGCGTTCAGGC
CCTCCATCAGTATTCTGCGGGCGGGGGCTCCAGCCACGCAGGCGGCGGCT
TTCCCAGCGGAGGAAGCGGGGGAGGACGGGGAAGAGGCGGGGGAGGCGCG
CGCCTGTACCCCGTCCCTGTAGATGCGAGCACATGGGCAGTGGAGGTGCC
CAAGAGCCAGGTGGGAAAGGTGATCGGTCGGGGGGGCGAGATCGTCGGGC
TTATCCAGGACAAGAGCGGGTGCCGGTTGCAGATCTCGCAGGACGTTCCG
GAAGGCCGGCCTTGCCGCGTCTCGATCATGGGGGGAACGGAGGGGGCGGC
GGACTACGTCTGTGAGATGATCGAGGCCATCATGGAGCGGGGTCCGCCCG
TCGTACACGACTTCCCGGCCTTTGGAGGGGGAGGGAGGGGAGGAGGGAGA
GGGGGCGGGGGCTTCGGGCGGGGGAGAGCGCGGGAGGGGCCCCCGGCATA
TCCGGGAGCGAGGGGGATGGGGGGAGGGGGAGGTTACGGCGGAGGGGGAG
CAGGGTGGGGGGGAGGAGGAGGCTACTATGGGGGGGCGACGGCCCCTGTG
CCGGGCCCCTACATGGGCGGGGCGGGAGGCGGGGGGGGATGGGGAGGGGG
CTACCCCCCCGCAACAGCAACAGGCGGTGGCGGCCCCCGTCATGCAGCAG
CAGCAGCCCATGGCGTGGGACGGGCAAGGTCGGGGGGCGTACGCGGCGCC
CATGCCAATGGGAGGGCGGGGGCAAGGGGGGGCCGCGCCGCTGCCGGCGG
GATGGAGGGAATGTGCGACGGCGGACGGGACTCCCTACTGGTTCAACTCG
GCCACGGGGGTCTCGCAGTGGCATCGGCCGTAG
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Coding sequence (CDS) from alignment at KK037252.1:50881..52663-

>rna9187 ID=rna9187|Name=rna9187|organism=Nannochloropsis gaditana|type=CDS|length=3006bp|location=Sequence derived from alignment at KK037252.1:50881..52663- (Nannochloropsis gaditana)
TGGCATCGGCCGTAGCACGTGAGATCATCATAGCCATCATGGAGCAGGGC
GTTCAGGCCCTCCATCAGTATTCTGCGGGCGGGGGCTCCAGCCACGCAGG
CGGCGGCTTTCCCAGCGGAGGAAGCGGGGGAGGACGGGGAAGAGGCGGGG
GAGGCGCGCGCCTGTACCCCGTCCCTGTAGATGCGAGCACATGGGCAGTG
GAGGTGCCCAAGAGCCAGATGGTGACCAACGGCGAACACACACCTGCTGA
GGATGAAGTGCAGCAGGAGGTGCAAGGCGAGGAGCAAGCGCAGGAAGAAG
AAGTGAATGCAGAGGAGGAGGACTTGGCTGTTCCCAACGGGGAAGGTGGT
GGAGAGACTGAATCGGAGGCGGTTGGGACCAAACGCCCACGAGAGGAAGA
GGATGAAGCGAAAGAGGGGGAGCATGCGGAAGAGGCGACAGCAGAGACAG
AATCCACCGGAAAAGTAGAAGAAGGTCATGCAGTCGTTGGACAACCGAGT
AAGAAACAGGCGACCACCGAGGCCCGAGAGTCGAGCGCGGAAACCAACGC
CGCCTTTGCCGAAGCCAATCAACACCAGGAGGTGATGGACGTGGCCAAGG
ACGTGGTGGGTCGTATCATTGGGAAAGGGGGAGAAACGATCCGAGACATC
CAAACGCGGAGTGGCTGCCAGTGCGTGATCGATCAAAGCGTCCCCGACGG
AGAGCCCCGGAAATTAACCATCGTGGGCAAGCCCGAGCACGTAAAGAACG
CGCGGGCCATGATCGAAGGCGTGATGGAGGGGGGCCCTTCCGTGCTGGCG
GATTTTCCGGAAGTGGCGGGCAATTCCAAGGCGACAGTGGACTGCCCGCG
GGGCCTGGTGGGACGATTGATCGGGAAGGGGGGAGACATCGTCAGGGAGA
TCCAGTACAAGAGCAAGGCAGTCATCCAGATCAATCAGTCCCTCCCGCAG
GACCAGCCCTGCAAGGTGACCATCACGGGGGCACCCAAAGCCGTGCAAAG
TGTGGCATCGGCCGTAGCACGTGAGATCATCATAGCCATCATGGAGCAGG
GCGTTCAGGCCCTCCATCAGTATTCTGCGGGCGGGGGCTCCAGCCACGCA
GGCGGCGGCTTTCCCAGCGGAGGAAGCGGGGGAGGACGGGGAAGAGGCGG
GGGAGGCGCGCGCCTGTACCCCGTCCCTGTAGATGCGAGCACATGGGCAG
TGGAGGTGCCCAAGAGCCAGATGGTGACCAACGGCGAACACACACCTGCT
GAGGATGAAGTGCAGCAGGAGGTGCAAGGCGAGGAGCAAGCGCAGGAAGA
AGAAGTGAATGCAGAGGAGGAGGACTTGGCTGTTCCCAACGGGGAAGGTG
GTGGAGAGACTGAATCGGAGGCGGTTGGGACCAAACGCCCACGAGAGGAA
GAGGATGAAGCGAAAGAGGGGGAGCATGCGGAAGAGGCGACAGCAGAGAC
AGAATCCACCGGAAAAGTAGAAGAAGGTCATGCAGTCGTTGGACAACCGA
GTAAGAAACAGGCGACCACCGAGGCCCGAGAGTCGAGCGCGGAAACCAAC
GCCGCCTTTGCCGAAGCCAATCAACACCAGGAGGTGATGGACGTGGCCAA
GGACGTGGTGGGTCGTATCATTGGGAAAGGGGGAGAAACGATCCGAGACA
TCCAAACGCGGAGTGGCTGCCAGTGCGTGATCGATCAAAGCGTCCCCGAC
GGAGAGCCCCGGAAATTAACCATCGTGGGCAAGCCCGAGCACGTAAAGAA
CGCGCGGGCCATGATCGAAGGCGTGATGGAGGGGGGCCCTTCCGTGCTGG
CGGATTTTCCGGAAGTGGCGGGCAATTCCAAGGCGACAGTGGACTGCCCG
CGGGGCCTGGTGGGACGATTGATCGGGAAGGGGGGAGACATCGTCAGGGA
GATCCAGTACAAGAGCAAGGCAGTCATCCAGATCAATCAGTCCCTCCCGC
AGGACCAGCCCTGCAAGGTGACCATCACGGGGGCACCCAAAGCCGTGCAA
AGTGTGGCATCGGCCGTAGCACGTGAGATCATCATAGCCATCATGGAGCA
GGGCGTTCAGGCCCTCCATCAGTATTCTGCGGGCGGGGGCTCCAGCCACG
CAGGCGGCGGCTTTCCCAGCGGAGGAAGCGGGGGAGGACGGGGAAGAGGC
GGGGGAGGCGCGCGCCTGTACCCCGTCCCTGTAGATGCGAGCACATGGGC
AGTGGAGGTGCCCAAGAGCCAGATGGTGACCAACGGCGAACACACACCTG
CTGAGGATGAAGTGCAGCAGGAGGTGCAAGGCGAGGAGCAAGCGCAGGAA
GAAGAAGTGAATGCAGAGGAGGAGGACTTGGCTGTTCCCAACGGGGAAGG
TGGTGGAGAGACTGAATCGGAGGCGGTTGGGACCAAACGCCCACGAGAGG
AAGAGGATGAAGCGAAAGAGGGGGAGCATGCGGAAGAGGCGACAGCAGAG
ACAGAATCCACCGGAAAAGTAGAAGAAGGTCATGCAGTCGTTGGACAACC
GAGTAAGAAACAGGCGACCACCGAGGCCCGAGAGTCGAGCGCGGAAACCA
ACGCCGCCTTTGCCGAAGCCAATCAACACCAGGAGGTGATGGACGTGGCC
AAGGACGTGGTGGGTCGTATCATTGGGAAAGGGGGAGAAACGATCCGAGA
CATCCAAACGCGGAGTGGCTGCCAGTGCGTGATCGATCAAAGCGTCCCCG
ACGGAGAGCCCCGGAAATTAACCATCGTGGGCAAGCCCGAGCACGTAAAG
AACGCGCGGGCCATGATCGAAGGCGTGATGGAGGGGGGCCCTTCCGTGCT
GGCGGATTTTCCGGAAGTGGCGGGCAATTCCAAGGCGACAGTGGACTGCC
CGCGGGGCCTGGTGGGACGATTGATCGGGAAGGGGGGAGACATCGTCAGG
GAGATCCAGTACAAGAGCAAGGCAGTCATCCAGATCAATCAGTCCCTCCC
GCAGGACCAGCCCTGCAAGGTGACCATCACGGGGGCACCCAAAGCCGTGC
AAAGTG
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Synonyms
Publications