EWM21516.1, cds9157 (CDS) Nannochloropsis gaditana

Overview
NameEWM21516.1
Unique Namecds9157
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:51880..52663 -
Alignment locationKK037252.1:51554..51756 -
Alignment locationKK037252.1:50881..50895 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21516.1
Productcircadian rna-binding protein chlamy 1 subunit c1
Orig transcript idgnl|cribi|Naga_100317g4.5832.mrna
GeneCRB1m
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:51880..52663 -
KK037252.1supercontigKK037252.1:51554..51756 -
KK037252.1supercontigKK037252.1:50881..50895 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR004088KH_dom_type_1
IPR004087KH_dom
Homology
BLAST of EWM21516.1 vs. NCBI_GenBank
Match: gi|585101747|gb|EWM21516.1| (circadian rna-binding protein chlamy 1 subunit c1 [Nannochloropsis gaditana])

HSP 1 Score: 663.3 bits (1710), Expect = 0.000e+0
Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 0
Query:    1 MVTNGEHTPAEDEVQQEVQGEEQAQEEEVNAEEEDLAVPNGEGGGETESEAVGTKRPREEEDEAKEGEHAEEATAETESTGKVEEGHAVVGQPSKKQATTEARESSAETNAAFAEANQHQEVMDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGGPSVLADFPEVAGNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSAREIIIAIMEQGVQALHQYSAGGGSSHAGGGFPSGGSGGGRGRGGGGARLYPVPVDASTWAVEVPKSQWHRP 333
            MVTNGEHTPAEDEVQQEVQGEEQAQEEEVNAEEEDLAVPNGEGGGETESEAVGTKRPREEEDEAKEGEHAEEATAETESTGKVEEGHAVVGQPSKKQATTEARESSAETNAAFAEANQHQEVMDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGGPSVLADFPEVAGNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSAREIIIAIMEQGVQALHQYSAGGGSSHAGGGFPSGGSGGGRGRGGGGARLYPVPVDASTWAVEVPKSQWHRP
Sbjct:    1 MVTNGEHTPAEDEVQQEVQGEEQAQEEEVNAEEEDLAVPNGEGGGETESEAVGTKRPREEEDEAKEGEHAEEATAETESTGKVEEGHAVVGQPSKKQATTEARESSAETNAAFAEANQHQEVMDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGGPSVLADFPEVAGNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSAREIIIAIMEQGVQALHQYSAGGGSSHAGGGFPSGGSGGGRGRGGGGARLYPVPVDASTWAVEVPKSQWHRP 333          
BLAST of EWM21516.1 vs. NCBI_GenBank
Match: gi|553186386|ref|XP_005854408.1| (far upstream binding protein [Nannochloropsis gaditana CCMP526] >gi|422294650|gb|EKU21950.1| far upstream binding protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 515.383 bits (1326), Expect = 0.000e+0
Identity = 260/267 (97.38%), Postives = 262/267 (98.13%), Query Frame = 0
Query:    1 MVTNGEHTPAEDEVQQEVQGEEQAQEEEVNAEEEDLAVPNGEGGGETESEAVGTKRPREEEDEAKEGEHAEEATAETESTGKVEEGHAVVGQPSKKQATTEARESSAETNAAFAEANQHQEVMDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGGPSVLADFPEVAGNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSAREIII 267
            MVTNGEHTPAEDEVQQEVQGEEQAQEEEVNAEEEDLAVPNGEGGGETESEAVGTKRPREEEDEAKEGEHAEEATAETESTGKVEE HAVVGQPSKKQATTEARESSAETNAAFAEANQHQEVMDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGGPSVLADFPEVAGNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQS +   +
Sbjct:    1 MVTNGEHTPAEDEVQQEVQGEEQAQEEEVNAEEEDLAVPNGEGGGETESEAVGTKRPREEEDEAKEGEHAEEATAETESTGKVEEDHAVVGQPSKKQATTEARESSAETNAAFAEANQHQEVMDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGGPSVLADFPEVAGNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSGKTFFL 267          

HSP 2 Score: 73.559 bits (179), Expect = 3.131e-11
Identity = 45/117 (38.46%), Postives = 66/117 (56.41%), Query Frame = 0
Query:  194 ADFPEVAGNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSAREIIIAIMEQGVQALHQYSAGGGSSHAGGGFPSGGSGGGRGRGGGGAR 310
            A F E A   +  +D  + +VGR+IGKGG+ +R+IQ +S     I+QS+P  +P K+TI G P+ V++AR +I  +ME G   L  +    G+S A    P G  G   G+GG   R
Sbjct:  111 AAFAE-ANQHQEVMDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGGPSVLADFPEVAGNSKATVDCPRGLVGRLIGKGGDIVR 226          
BLAST of EWM21516.1 vs. NCBI_GenBank
Match: gi|545375741|ref|XP_005652020.1| (hypothetical protein COCSUDRAFT_64249 [Coccomyxa subellipsoidea C-169] >gi|384254002|gb|EIE27476.1| hypothetical protein COCSUDRAFT_64249 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 118.627 bits (296), Expect = 6.883e-26
Identity = 74/179 (41.34%), Postives = 107/179 (59.78%), Query Frame = 0
Query:  129 VVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGGP----SVLADFPEVAGNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSAREIIIAIMEQGVQALHQYSAGGGSSHAGGGFPSGGSGGGRG 303
            +VGRIIG+GGETIR +Q  S    V+DQ+ P+GEPR++ I G+P+ V+ A  M+  ++ G P    S++      AG ++  V CP+G+VGR+IGKGG+ ++ +Q    A IQI+Q+     P K+TI G P AV+SA   +  I+  G   L   +AG G    GG  P  G+ GG G
Sbjct:  334 IVGRIIGRGGETIRALQQASQAHIVVDQNYPEGEPRRVNISGRPDAVERAVKMVSELISGEPGSAQSIIQKVHYGAGVTR-EVQCPKGMVGRVIGKGGETIKALQKNFGANIQIDQTT---DPMKITIAGQPPAVESAAAAVTEIINGGNPYLGP-TAGAGY---GGARPGFGAPGGYG 504          

HSP 2 Score: 99.3673 bits (246), Expect = 2.207e-19
Identity = 56/159 (35.22%), Postives = 97/159 (61.01%), Query Frame = 0
Query:  113 FAEANQHQEVMDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKP-EHVKNARAMIEGVMEGGPSVLADFPEVAGNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSAREIIIAIM 270
             A   Q  E +D+   +VG++IGKGGETI+ +Q  +  +  ID   P GE +K++I G   E V+ A+  +E ++    S        AG +  +V+CP+G+VGR+IG+GG+ +R +Q  S+A I ++Q+ P+ +P +V I+G P AV+ A +++  ++
Sbjct:  241 MAAQGQFYETIDIPAPMVGKLIGKGGETIKQLQYNTNTRVQIDHQTP-GEAKKVSIQGDSHEAVQAAKQQVEQIVSMDDSG-------AGGASQSVECPQGIVGRIIGRGGETIRALQQASQAHIVVDQNYPEGEPRRVNISGRPDAVERAVKMVSELI 391          
BLAST of EWM21516.1 vs. NCBI_GenBank
Match: gi|297592144|gb|ADI46928.1| (CRB1m [Volvox carteri f. nagariensis])

HSP 1 Score: 116.316 bits (290), Expect = 2.159e-25
Identity = 76/212 (35.85%), Postives = 115/212 (54.25%), Query Frame = 0
Query:  120 QEVMDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGG----PSVLADFPEVAGNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSAREIIIAIMEQGVQALHQYSAGG-------GSSHAGGGFPSGGSGGGRGRGGGGARLYPVPVDAST 320
            QE ++    +VGR+IG+GGETIR +Q  SG   +++Q  PDG PR++ I G  + V+ A +M+  +++G      S++  F      S   V+CP+ +VGR+IGKGG+ ++++Q +  A IQI+Q      PCK+TITG  + V SAR  I    E  ++A     +GG        +S+A   F   G  G  G  GG    Y +P  A T
Sbjct:  205 QETVECPPGIVGRVIGRGGETIRTLQQASGAHILVNQDFPDGVPRQIVITGAQDAVQRATSMVSELIQGDQGNTQSIIQRF---GVGSTEVVECPKAMVGRVIGKGGETIKDLQKRFSASIQIDQG---STPCKITITGPAQTVSSARRAI----EDLIRAATVQPSGGTRSAPPYNTSYAHQPFNGNGPSGAYGPYGG----YNLPPTAYT 402          

HSP 2 Score: 91.2781 bits (225), Expect = 9.066e-17
Identity = 51/151 (33.77%), Postives = 87/151 (57.62%), Query Frame = 0
Query:  121 EVMDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGGPSVLADFPEVAGNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSAREIIIAIME 271
            E +    D VGRIIG+ G TIR+++  +  +  +D      +P  + I G+ + V+NA+ +++ ++ G    +   P   G  + TV+CP G+VGR+IG+GG+ +R +Q  S A I +NQ  P   P ++ ITGA  AVQ A  ++  +++
Sbjct:  127 ETLSCPTDKVGRIIGRAGATIRELEASTNTRIQVDHKALGDKP--VIISGRRDDVENAKRVVQDLICGSNEAV---PPGTGEVQETVECPPGIVGRVIGRGGETIRTLQQASGAHILVNQDFPDGVPRQIVITGAQDAVQRATSMVSELIQ 272          
BLAST of EWM21516.1 vs. NCBI_GenBank
Match: gi|552830585|ref|XP_005847940.1| (hypothetical protein CHLNCDRAFT_52074 [Chlorella variabilis] >gi|307107596|gb|EFN55838.1| hypothetical protein CHLNCDRAFT_52074 [Chlorella variabilis])

HSP 1 Score: 114.005 bits (284), Expect = 2.999e-25
Identity = 70/210 (33.33%), Postives = 112/210 (53.33%), Query Frame = 0
Query:   65 KEGEHAEEATAETESTGKVEEGHAVVGQPSKKQATTEARESSAETNAAFAEANQHQEV---MDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGGP-SVLADFPEVAGN----SKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSAREII 266
            K GE        T++  +++  HA  G   +   +  + E+ A   A  A   Q +E    +D    +VGRIIG+GGETIR +Q+ S     +DQ+ P+G+PRK+ + G+P+  + A  MI  ++ G P S  A    V           + CP+G+VGR+IG+ GD ++++Q  + A IQI+QS     PC+VT+ G P +   A+ +I
Sbjct:   17 KAGETIRNLQLSTDT--RIQVDHAAEGDTKRVTISGMSAEAVARCRAEIATILQDEETKEELDCPAGIVGRIIGRGGETIRALQSASQAHITVDQNFPEGQPRKIIVQGRPDACQKASMMIRELINGEPGSAQAIIQRVCAEQGIGKTHVMSCPKGIVGRIIGRQGDTIKQLQRVTGATIQIDQS---TDPCRVTLAGQPSSSDQAKRMI 221          

HSP 2 Score: 90.8929 bits (224), Expect = 5.791e-17
Identity = 51/147 (34.69%), Postives = 87/147 (59.18%), Query Frame = 0
Query:  121 EVMDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVG-KPEHVKNARAMIEGVMEGGPSVLADFPEVAGNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSAREII 266
            E++D+   +VG++IGK GETIR++Q  +  +  +D +  +G+ +++TI G   E V   RA I  +++               +K  +DCP G+VGR+IG+GG+ +R +Q  S+A I ++Q+ P+ QP K+ + G P A Q A  +I
Sbjct:    2 EILDIPSAMVGKLIGKAGETIRNLQLSTDTRIQVDHAA-EGDTKRVTISGMSAEAVARCRAEIATILQD------------EETKEELDCPAGIVGRIIGRGGETIRALQSASQAHITVDQNFPEGQPRKIIVQGRPDACQKASMMI 135          
BLAST of EWM21516.1 vs. NCBI_GenBank
Match: gi|1004137328|gb|KXZ45354.1| (hypothetical protein GPECTOR_55g260 [Gonium pectorale])

HSP 1 Score: 112.464 bits (280), Expect = 5.654e-24
Identity = 60/162 (37.04%), Postives = 97/162 (59.88%), Query Frame = 0
Query:  109 TNAAFAEANQHQEVMDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGG----PSVLADFPEVAGNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSAREII 266
            T+A+   A + Q+ ++    +VGR+IG+GGETIR +Q  SG   +++Q  P+G+PR++ I G  + V  A  M+  ++ G      +V+  F      S   ++CP+ +VGR+IGKGG+ ++++Q +  A IQI+QS     PCKVTITG    + SAR  +
Sbjct:  209 TDASQPVAGEVQKTLECPAGIVGRVIGRGGETIRSLQQASGAHILVNQDFPEGQPREIVITGTQDSVDRAHNMVTELIGGANVSTQTVIQRF---GVGSTEVLECPKAMVGRIIGKGGETIKDLQKRFSASIQIDQS---STPCKVTITGPGHMISSARRAV 364          

HSP 2 Score: 97.8265 bits (242), Expect = 5.773e-19
Identity = 55/150 (36.67%), Postives = 88/150 (58.67%), Query Frame = 0
Query:  121 EVMDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGGPSVLADFPEVAGNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSAREIIIAIM 270
            EV+    D VGR+IG+ G TIRD++  +G +  +D      +P  +TI GK E V+ A   ++ ++ G     A  P VAG  + T++CP G+VGR+IG+GG+ +R +Q  S A I +NQ  P+ QP ++ ITG   +V  A  ++  ++
Sbjct:  140 EVVMCPPDKVGRVIGRAGATIRDLEAGTGTRIQVDHKAAGEKP--VTISGKREDVERAVKTVQDLIAGTTGTDASQP-VAGEVQKTLECPAGIVGRVIGRGGETIRSLQQASGAHILVNQDFPEGQPREIVITGTQDSVDRAHNMVTELI 286          
BLAST of EWM21516.1 vs. NCBI_GenBank
Match: gi|302852888|ref|XP_002957962.1| (subunit of circadian RNA-binding protein [Volvox carteri f. nagariensis] >gi|297592090|gb|ADI46875.1| CRB1f [Volvox carteri f. nagariensis] >gi|300256728|gb|EFJ40988.1| subunit of circadian RNA-binding protein [Volvox carteri f. nagariensis])

HSP 1 Score: 109.383 bits (272), Expect = 5.821e-23
Identity = 65/181 (35.91%), Postives = 99/181 (54.70%), Query Frame = 0
Query:  106 SAETNAAFAEANQHQEVMDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGG--PSVLADFPEVAGNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSAREIIIAIMEQGVQALHQYSAGG 284
            S  T       N+ Q  ++    +VGRIIG+GGETIR +Q  SG   +++Q  P+G PR++ I G  + V+ A +M+  ++ G    +  A        S   V+CP+ +VGR+IGKGG+ ++++Q +    IQI+Q      PCKVTITG    + SAR  I    E+ ++   Q S GG
Sbjct:  191 SGATETTSPSTNEVQGTVECPPGIVGRIIGRGGETIRTLQQASGAHILVNQDFPEGVPRQIIITGAQDAVQRATSMVSELINGSNHTNTQAIIQRFGVGSTEVVECPKAMVGRIIGKGGETIKDLQKRFNVSIQIDQG---STPCKVTITGPSPLISSARRSI----EELIRTPSQPSGGG 364          

HSP 2 Score: 88.5817 bits (218), Expect = 7.509e-16
Identity = 52/147 (35.37%), Postives = 82/147 (55.78%), Query Frame = 0
Query:  121 EVMDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGGPSVLA-DFPEVAGNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSAREII 266
            E +    D VGRIIG+ G TIRD++  +  +  +D   P  +P  + + G+ + V  A+  +  ++ G     +    EV G    TV+CP G+VGR+IG+GG+ +R +Q  S A I +NQ  P+  P ++ ITGA  AVQ A  ++
Sbjct:  127 ETIMCPPDKVGRIIGRAGATIRDLEASTSTRIQVDHKAPGDKP--VVVSGRRDDVDRAKRAVHDLISGATETTSPSTNEVQG----TVECPPGIVGRIIGRGGETIRTLQQASGAHILVNQDFPEGVPRQIIITGAQDAVQRATSMV 267          
BLAST of EWM21516.1 vs. NCBI_GenBank
Match: gi|40792684|gb|AAR90343.1| (circadian RNA-binding protein CHLAMY 1 subunit C1, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 108.997 bits (271), Expect = 6.992e-23
Identity = 57/148 (38.51%), Postives = 93/148 (62.84%), Query Frame = 0
Query:  120 QEVMDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGGPSVLADFPEVAG-NSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSAREII 266
            Q+ ++  + +VGR+IG+GGETIR +Q  SG   +++Q  P+G  R++TI G  + V  A +M++ ++ G  +  +   +  G  S   ++CP+ +VGR+IGKGG+ ++++Q +  A IQI+QS     PCKVTITG    + SAR  I
Sbjct:  179 QKTLECPQGIVGRVIGRGGETIRTLQQASGAHILVNQDFPEGAARQITISGSQDAVDRAASMVQELIGGEHANTSQVVQRFGVGSTEVLECPKTMVGRIIGKGGETIKDLQKRFNASIQIDQSA---MPCKVTITGPSHTIASARRAI 323          

HSP 2 Score: 92.8189 bits (229), Expect = 2.984e-17
Identity = 51/146 (34.93%), Postives = 87/146 (59.59%), Query Frame = 0
Query:  121 EVMDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGGPSVLADFPEVAGNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSAREII 266
            E +    D VGR+IG+ G TIRD++  +G +  +D   P  +P  +TI G+ + V+ A+  +  ++ G  S  A  P   G ++ T++CP+G+VGR+IG+GG+ +R +Q  S A I +NQ  P+    ++TI+G+  AV  A  ++
Sbjct:  101 ETIMCPPDKVGRVIGRAGATIRDLEASTGTRIQVDHKAPGDKP--VTISGRADEVERAKRQVLDLISGHGSDAAPAP---GEAQKTLECPQGIVGRVIGRGGETIRTLQQASGAHILVNQDFPEGAARQITISGSQDAVDRAASMV 241          
BLAST of EWM21516.1 vs. NCBI_GenBank
Match: gi|159476646|ref|XP_001696422.1| (C1, subunit of the circadian RNA-binding protein CHLAMY 1 [Chlamydomonas reinhardtii] >gi|158282647|gb|EDP08399.1| C1, subunit of the circadian RNA-binding protein CHLAMY 1 [Chlamydomonas reinhardtii])

HSP 1 Score: 108.997 bits (271), Expect = 7.547e-23
Identity = 57/148 (38.51%), Postives = 93/148 (62.84%), Query Frame = 0
Query:  120 QEVMDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGGPSVLADFPEVAG-NSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSAREII 266
            Q+ ++  + +VGR+IG+GGETIR +Q  SG   +++Q  P+G  R++TI G  + V  A +M++ ++ G  +  +   +  G  S   ++CP+ +VGR+IGKGG+ ++++Q +  A IQI+QS     PCKVTITG    + SAR  I
Sbjct:  202 QKTLECPQGIVGRVIGRGGETIRTLQQASGAHILVNQDFPEGAARQITISGSQDAVDRAASMVQELIGGEHANTSQVVQRFGVGSTEVLECPKTMVGRIIGKGGETIKDLQKRFNASIQIDQSA---MPCKVTITGPSHTIASARRAI 346          

HSP 2 Score: 92.8189 bits (229), Expect = 2.594e-17
Identity = 51/146 (34.93%), Postives = 87/146 (59.59%), Query Frame = 0
Query:  121 EVMDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGGPSVLADFPEVAGNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSAREII 266
            E +    D VGR+IG+ G TIRD++  +G +  +D   P  +P  +TI G+ + V+ A+  +  ++ G  S  A  P   G ++ T++CP+G+VGR+IG+GG+ +R +Q  S A I +NQ  P+    ++TI+G+  AV  A  ++
Sbjct:  124 ETIMCPPDKVGRVIGRAGATIRDLEASTGTRIQVDHKAPGDKP--VTISGRADEVERAKRQVLDLISGHGSDAAPAP---GEAQKTLECPQGIVGRVIGRGGETIRTLQQASGAHILVNQDFPEGAARQITISGSQDAVDRAASMV 264          
BLAST of EWM21516.1 vs. NCBI_GenBank
Match: gi|693496189|emb|CEG00713.1| (K Homology domain, type 1 [Ostreococcus tauri])

HSP 1 Score: 107.842 bits (268), Expect = 1.040e-22
Identity = 62/173 (35.84%), Postives = 100/173 (57.80%), Query Frame = 0
Query:  123 MDVAKDVVGRIIGKGGETIRDIQTRSGCQCVIDQSVPDGEPRKLTIVGKPEHVKNARAMIEGVMEGGPSVLADFPEVAGNSKATVDCPRGLVGRLIGKGGDIVREIQYKSKAVIQINQSLPQDQPCKVTITGAPKAVQSAREIIIAIMEQGVQALHQYSAGGGSSHAGGGFPS 295
            ++  + +VGRIIG+GGETI+ +Q  SG    IDQS  DGEP+++TI G  + V  A  ++E ++  G   +     + G    +++CP+  VG++IG+GG+ +R IQ  + A +QI+Q+    QPC V + GA   V +  +++  I+E G  A+    A GG    G G+ S
Sbjct:  158 LECPQSMVGRIIGRGGETIKSLQATSGAHVAIDQSGADGEPKRVTISGTRKSVDAASELVENLLL-GTGAMGGMLVIPGQITRSIECPKERVGKIIGRGGETIRGIQAATGARLQIDQTR---QPCVVMMAGAEACVDACTQVVNEILEGGSTAVFNEIARGGQ---GFGYAS 323          
The following BLAST results are available for this feature:
BLAST of EWM21516.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101747|gb|EWM21516.1|0.000e+0100.00circadian rna-binding protein chlamy 1 subunit c1 ... [more]
gi|553186386|ref|XP_005854408.1|3.131e-1197.38far upstream binding protein [Nannochloropsis gadi... [more]
gi|545375741|ref|XP_005652020.1|6.883e-2641.34hypothetical protein COCSUDRAFT_64249 [Coccomyxa s... [more]
gi|297592144|gb|ADI46928.1|2.159e-2535.85CRB1m [Volvox carteri f. nagariensis][more]
gi|552830585|ref|XP_005847940.1|2.999e-2533.33hypothetical protein CHLNCDRAFT_52074 [Chlorella v... [more]
gi|1004137328|gb|KXZ45354.1|5.654e-2437.04hypothetical protein GPECTOR_55g260 [Gonium pector... [more]
gi|302852888|ref|XP_002957962.1|5.821e-2335.91subunit of circadian RNA-binding protein [Volvox c... [more]
gi|40792684|gb|AAR90343.1|6.992e-2338.51circadian RNA-binding protein CHLAMY 1 subunit C1,... [more]
gi|159476646|ref|XP_001696422.1|7.547e-2338.51C1, subunit of the circadian RNA-binding protein C... [more]
gi|693496189|emb|CEG00713.1|1.040e-2235.84K Homology domain, type 1 [Ostreococcus tauri][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9187rna9187Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications