rna9184, rna9184 (mRNA) Nannochloropsis gaditana

Overview
Namerna9184
Unique Namerna9184
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length893
Alignment locationKK037252.1:41307..42201 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100204g9.5778.mrna
Orig protein idgnl|cribi|Naga_100204g9.5778
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:41307..42201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100204g9gene8909Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9184rna9184-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21526.1cds9154Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9184 ID=rna9184|Name=rna9184|organism=Nannochloropsis gaditana|type=mRNA|length=893bp
GCATCCCTATTCTTTCACCTCACGTAAATTACAGGAGTCGCTTCCTGAAT
CTCAGGCAACCTCCCCAACACGTCACCGTCACGGACATTATCTCCCTCGC
CATCCACAGCAGCGTATAGCGTCGACGATGGGAGCGCGAGGGAGTAAGCC
TGCAGGAGAGGTCATGTCTGCCGCGGCCGTTCAAGCTAGGCGGCAGGCAG
TCGCCCAAGCGTCCCGGACACAAGAAGCTCCTTCGGGAGTAACGATCGAA
GGCAGAAGCCCAAACAACCAGTCCCTCCCCCTTCCCCCCCCTTCTGCCCC
ACCGTCGTCCATCCCATCTGAGCGAGCAGGTAATCAGCTGGAAGCTGACG
ACACTCTCATAAGAATGATGAATGAGTTAGGCCCGGCTATAAAGACTGCC
CGACTCCAGACGCCGCGTCGAGACATGAACAAAATGATGCACGCACATCA
AGATAAACCCCATACACTTCACGAGGACACCTTGGCCCTCATATTACGGG
CTAGGCGCGAGGCTCCAGAAAAATTTGACATTGGGAAGGTGTGCGCTCAG
CATGAGCTGAAAGCAGAGACGCTAGCCAAGGTCTTGGAGGTGATCGAAGT
ACCACGAATAATAGAGAGGCAAGGGCAGAAATATGGCTATTGGTGAGGCA
GACGGCGACGGGGGCATTGATCTGAGCTAAATATTACTTGTACAGGGACG
TGATGGTAGAGTCCTCAAGCGGTCGAGGGGACACGCGGCAGATGCAGAAA
TGGAATAAAAAAAAGAGGAAAGGGATGCACAAGGAACTTTTGGGCTGCGT
TGACCTCCAATGCGATCGAGCCTTCGCCTTGTCTGGACCTAAAATTTTCG
GAAAGAAAATAGTAAATAACGCTGCAAAGCCATTCATGTTGCA
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protein sequence of rna9184

>rna9184-protein ID=rna9184-protein|Name=rna9184|organism=Nannochloropsis gaditana|type=polypeptide|length=224bp
MRNVIALVLLAAQLPAVPALLSFTNPPPKQPALHFRPGLPTDNPLIRQSM
LEARMNPAFLKPEYFTIAEHPGPNAGTGRATTAGFGQIRPILGTGGQVCE
LASVYVLPASRKQRIGSRIIARLVENFRADNSRARQVPSSSQSVPTPRLV
LLTLADTAPFYSSHGFFVLPDPVRAKPPLPMLFVLEYLAGSVVARLSRGP
ATKLVCMELQEGGNSWRIAAKRTN
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mRNA from alignment at KK037252.1:41307..42201+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9184 ID=rna9184|Name=rna9184|organism=Nannochloropsis gaditana|type=mRNA|length=895bp|location=Sequence derived from alignment at KK037252.1:41307..42201+ (Nannochloropsis gaditana)
CCACGTAGCATCGCCAAGGCAAACCTCAAGTCGCTCCTTTACTGCGATTG
CTTCCTGACAAAGTTTGATTTGCATCCAATACATCTTCACAGCGTATGCC
CAGAAATCGATGCGAAACGTAATCGCTCTTGTCTTGCTTGCTGCCCAGTT
GCCCGcagtccccgccctcctttccttcacgaATCCCCCTCCAAAGCAAC
CTgccctccatttccgcccTGGCCTTCCTACAGACAACCCCCTCATCCGC
CAAAGCATGTTAGAGGCTCGCATGAATCCAGCATTCCTCAAACCTGAGTA
CTTCACCATTGCCGAGCACCCTGGCCCGAATGCTGGCACGGGGCGAGCGA
CGACGGCAGGTTTTGGGCAAATCCGTCCCATCCTGGGAACGGGAGGACAA
GTCTGCGAGCTCGCGTCGGTAtacgtcctccctgcttcaAGAAAGCAGAG
AATAGGGTCGCGCATAATTGCTAGGCTCGTGGAGAATTTCCGAGCCGATA
ACAGCAGAGCGCGCCAGgtcccctcttcttcccagTCTGTTCCTACTCCT
CGACTCGTCCTTCTCACCCTGGCAGACACGGCACCTTTCTACTCTTCCCA
CGGCTTTTTTGTGCTTCCAGACCCTGTCCGAGCCAAGCCACCCCTGCCAA
TGCTCTTTGTACTCGAGTATTTGGCCGGATCAGTGGTGGCGAGGCTTTCC
CGGGGCCCGGCGACCAAGTTGGTGTGTATGGAGctgcaggaggggggaaa
cagTTGGAGAATAGCTGCAAAACGCACGAATTAGTGTGGGAAGAAAGCAT
AAACGACGGATTAAAAGCGTCTGAAACGTCTATTTCTTGGTGGGTGTGGC
ATGACTCAAGACTCTTTGCACTGTCTTACATGATGTctcctgctc
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Coding sequence (CDS) from alignment at KK037252.1:41307..42201+

>rna9184 ID=rna9184|Name=rna9184|organism=Nannochloropsis gaditana|type=CDS|length=675bp|location=Sequence derived from alignment at KK037252.1:41307..42201+ (Nannochloropsis gaditana)
ATGCGAAACGTAATCGCTCTTGTCTTGCTTGCTGCCCAGTTGCCCGcagt
ccccgccctcctttccttcacgaATCCCCCTCCAAAGCAACCTgccctcc
atttccgcccTGGCCTTCCTACAGACAACCCCCTCATCCGCCAAAGCATG
TTAGAGGCTCGCATGAATCCAGCATTCCTCAAACCTGAGTACTTCACCAT
TGCCGAGCACCCTGGCCCGAATGCTGGCACGGGGCGAGCGACGACGGCAG
GTTTTGGGCAAATCCGTCCCATCCTGGGAACGGGAGGACAAGTCTGCGAG
CTCGCGTCGGTAtacgtcctccctgcttcaAGAAAGCAGAGAATAGGGTC
GCGCATAATTGCTAGGCTCGTGGAGAATTTCCGAGCCGATAACAGCAGAG
CGCGCCAGgtcccctcttcttcccagTCTGTTCCTACTCCTCGACTCGTC
CTTCTCACCCTGGCAGACACGGCACCTTTCTACTCTTCCCACGGCTTTTT
TGTGCTTCCAGACCCTGTCCGAGCCAAGCCACCCCTGCCAATGCTCTTTG
TACTCGAGTATTTGGCCGGATCAGTGGTGGCGAGGCTTTCCCGGGGCCCG
GCGACCAAGTTGGTGTGTATGGAGctgcaggaggggggaaacagTTGGAG
AATAGCTGCAAAACGCACGAATTAG
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Synonyms
Publications