rna9181, rna9181 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9181
Unique Name	rna9181
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1737
Alignment location	KK037252.1:31456..33562 +

Link to JBrowse

Properties


Property Name	Value
Product	psbp domain-containing protein chloroplastic-like protein
Orig transcript id	gnl\|cribi\|Naga_100204g5.5776.mrna
Orig protein id	gnl\|cribi\|Naga_100204g5.5776
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:31456..33562 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100204g5	gene8906	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9181	rna9181-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21524.1	cds9151	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:31456..33562+
coding sequence from alignment at KK037252.1:31456..33562+

mRNA sequence

>rna9181 ID=rna9181|Name=rna9181|organism=Nannochloropsis gaditana|type=mRNA|length=1737bp
CCATTTTCTTCCCATGTGCCCACAGGGCGCGATGTCTTTCCTGTCGTGGT
GCTGGTTTTTGATCTTCATGGTCTCGTTTTCTTCTTTGCTCTGGGCATTT
CCATCTTCAGGGAGCAAACCCCGCTGCGGTGCAGGTTTTGACTTCGGTAC
GAGCGGCGTTCGATTAGTCGTCCTCGAGGCCTCTGAGACTCCTACTTGCG
TTCATCAGGCCTCCTTCCGATGGCCCCATTCTCAAACTGTGCAAGATGCC
GAGGAATGGCGCCTGGCGATGTTTAGACTTCTAGATGACATACCCCCTGC
AATACGATCCCGGATGGCCCGCGTAGCAATCAGCGGCACCAGCGCCTCAT
GCGTGGTTGTGAATAAAGCGAATGGAGCAATCACTCGGAATCCAAGGCTC
TACAATTGGGATGCCCTCCGCGAGATACCAGAAACAGGTAGAAAGGCACA
ATGTCTGATAGCAGATTATGCACCAGCCAAGCATGTCACCCTATCCGGGA
CATCTTCATTGATGAAAGTAGTGTCCTGGCATTTGGAGGAGGCATTCCAT
CGCGACGAAGTGATGCTGCACCAAGCCGATTTTCTTAGCGCCTGTCTGAT
ACACGATACCTCAACAGCAAAGAGAGAGCAGTCTTGTTTTCCCCGCGTCT
CAGACTGGAACAATATGCTAAAATTGGGCTACGACATGTCTGCCCTTGCT
TATCCTGGCTGGTTCTCCCCCCTCCTCGACGATCGCCTCGGTCTGGGCTG
CCCCTCTCCCTCCGAGTCCTCCCCCTCTACATACCGAGATGTCCTTCCGA
CGCACGTCATCGAGCCTGGTCAACCTAATGGCTGTGTGTCCCCCTCTTTG
GTGCAATCGCACGGCTTTCCAAGTGACTGCACTGTCGTCGGCGGCACCAC
CGACAGCGTCGCCGCTTTCATCGCAGCCGGTCTCCAGGAACCCGGACAGG
CCGTCACGAGCCTTGGTTCCACTTTGGCCATCAAAATGCTCAGCAACAAG
GCAGTCGAGGATGCAACTCGGGGCGTCTACAGCCATCGACTCGGGAATCA
GTGGTTGGTGGGGGGTGCGAGCAATGTAGGTTGCGCCGTGCTCAGACAAG
AAGGATTTTCCAATCCCGAGCTTGAGAGACTAAGCCAGGAGATCGATCCA
CGGAGACCTTGCCGGCACCTCAATTACTACCCCTTGGCGGGCGATGCGGG
GGAGCGGTTTCCCTCGTGCGACCCAAGCAAAAAAGCGCTACTGACGCCTC
GTCCTCCCAGGCGCAGCGAATATTTACAGGGGATATTGGAGGGAATTGCG
CGGGTAGAGAGAGACGGATATCAGATTTTGAAAGACCTGGGGGCAGACGA
GCTTGTGGAAGTAAGGACAGCAGGAGGGGGAGCCAGAAACAAGGTGTGGA
CACGAATAAGGAGGCAATTGTTGGGAGTACCAACAGGAAAGGCGAGCGAG
ACAGAAGCGTCCTATGGTGCCGCCTTGCTTGCTTTAAAGACGGTTTTATG
ACTTTTGGAGCTAATGGGACTCCAAATCTGAACAAGAATTGCTTGCAAAT
GATAATATTTTCACTCCAGCTGCATTTTGAGGAAAAGTGAGTGTAAAAAG
CTGTACAGTGGAAGGATTCTATGTATGTTCTGTGAAGAACACAGAAATTT
CAGCAAGGAAATTATTTTCGCTCAAGATCAGGTCTCTTTGCCTCGAATTT
GTATCTTTGAATACATAAAGTCCTACTGAGTTTTGTA

protein sequence of rna9181

>rna9181-protein ID=rna9181-protein|Name=rna9181|organism=Nannochloropsis gaditana|type=polypeptide|length=270bp
MLTFTCLILFLFALSPTMTAVIPGPTIRTSFEVLSVLTLLAFGNAFAPAA
LSRGRSPRLLTRSAEGTPLVSRSNILQQCGLISSAGILALTGGPFLLNIE
TASADEAGAAGEQSYFDEKYKVAFEHIPAKWGRTDTTIGTNNLDPRRIVV
FKDPSSEANVFIAYTPVQPDFTTLGAFGSILDVAKTIVPKGRGVESKLLN
YEGRKGAYYYDYVIQPAGQPKRHLTTLFALITISGTGECLATYTTSCLED
QWTVLEPVFDNITKSFRVGL

mRNA from alignment at KK037252.1:31456..33562+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9181 ID=rna9181|Name=rna9181|organism=Nannochloropsis gaditana|type=mRNA|length=2107bp|location=Sequence derived from alignment at KK037252.1:31456..33562+ (Nannochloropsis gaditana)
CTTGTACAATAGACACGACTGTCGAAACGTCCGAATTGAGAGGCCTTTCA
GAGCGCAttgtttttcttttcctatGTAAAGGGATGCAGGGAAGCCGGGT
AAGGCGGGGTCCGCCCCTGTCGAAACCCGTCGACCTCCTGCTTGCTtgct
gtccttcctttctgtcctTGCACCGCATGAATGTCGGAGTGAACCCGCGA
GGCACCGGTAGATGTCATATAGTTGCTGGGACGGGGTAGCCGACTCGATG
TAATGCTCACTTTCACATGTCTCATACTCTTTCTCTTCGCCCTCAGCCCG
ACCATGACGGCTGTCATCCCTGGACCCACCATCCGCACAAGTTTCGAAGT
TCTTTCAGTGCTGACTTTATTGGCATTCGGCAACGCctttgctcctgctg
ctttATCTAGGGGCAGGTGCGTTCGATGGGTATTTTTTTTGGGTTGCCAA
CTTCGTTCTTTTGGCCTCTTGCATACTATTCCTCCTAATCCTATTTTCGC
ACATCGCCTTCCCCAAAAGGTCACCACGACTCCTAACTCGCAGCGCAGAG
GGCACTCCATTGGTTTCTCGCAGCAACATTCTCCAACAATGTGGATTGAT
CTCTTCGGCAGGCATCTTGGCTCTCACTGGTGGTCCATTCCTCCTAAATA
TTGAAACTGCATCAGCAGATGAagctggtgctgctggagAGCAATCTTAT
TTTGACGAGAAGTACAAAGTAGCTTTCGAGCATATTCCGGCCAAATGGGG
AAGGACAGACACCACGATCGGGACGAACAACTTGGACCCCCGACGCATCG
TGGTATTCAAGGACCCTTCTAGTGAGGCAAATGTCTTCATCGCGTACACG
GTGGGTGGGGGGACTAGGAGCAAAATGAGGATAAGTAgaggaaagatgga
ggaaggaaattAGAAAAATTATTCTCTATGTAAACGTGAGAATTTATAAT
TTAGGTAAGAATGCTCATACCCTGGCTGGATTCAAATCGCTGATATGCAT
CCATCTATCCCTGTGTACTAATTGGTCTTTCCAATTCTTCCCACGCCCTT
CTGAGACAGCCTGTTCAACCTGATTTCACTACACTGGGAGCTTTCGGTAG
TATCTTAGACGTGGCCAAGACGATTGTTCCCAAAGGCCGCGGTACGAGGA
GTTTCTGAACTGAAActgggggggagaaggtgttGAGTACATCGAGAGTT
TCTCCAGTCTTTTCCACCTCGTATCTTTGGCCTATTGATTCTTGCATAAA
GACGTTGGGGACTGTCCCTTTAAGCTTCGTtttgttttctttcctccaac
TATGGGCCATAGGCGTCGAAAGCAAGCTCCTCAACTATGAAGGTCGAAAA
GGTGCCTACTATTACGACTATGTCATTCAACCCGCCGGCCAACCCAAGCG
ACACCTGACCACGCTCTTTGCTCTCATCACCATCAGTGGCACTGGAGAGT
GCCTCGCGACATATACCACCTCATGTTTAGAAGATCAATGGACAGTTTTG
GAGCCTGTATTCGACAACATTACCAAGTCCTTCAGAGTGGGCTTATGATT
GAGATGGATGGAATGAACGGGAGGGATTCAAAATATCTCTCAAGATCATT
CAATATTTTTGGGAAAGCTGATGATTCGTTAGGTTTATGCAGTTATGGAC
AATTAAGTGCTAAGAAAAGTCTATTAAGACTCAGTTCCTACTAGCCGTGA
AACCTTAAAAGGACCGCCGATTCTGAAAAGACTACGTGAGCTGCATCACA
ACGTCTGCCAAGACCATCGTCGTAAATCGTTGGTGAAAGAGCTAAAACAT
TAAATGTATTGGTCTCTTAGGAGTTTGATTGAAATTTAGGAGCGCGCGCG
CGAATGTGGTTCCACTGATATACGGTGCCCTGGAAAAGATACTTGGGGAT
GAGATTGCCATATCCTTGGTCCGGGTGCACAAAACAAAGACCATTGAAAG
CTAATTCGGTACCCTAAAGCATGAATCTGGTGGTTGTCAATGAATAAACT
ACTCATTGGCACACATTTTAGCGGTACTTGTTTTACCACCTTAGTGGATT
CAATTTGAGTATCCATTTTGTGAGCGCATCAGTCGTAAAAAACAGTTTTG
AAGGTTG

Coding sequence (CDS) from alignment at KK037252.1:31456..33562+

>rna9181 ID=rna9181|Name=rna9181|organism=Nannochloropsis gaditana|type=CDS|length=3252bp|location=Sequence derived from alignment at KK037252.1:31456..33562+ (Nannochloropsis gaditana)
ATGCTCACTTTCACATGTCTCATACTCTTTCTCTTCGCCCTCAGCCCGAC
CATGACGGCTGTCATCCCTGGACCCACCATCCGCACAAGTTTCGAAGTTC
TTTCAGTGCTGACTTTATTGGCATTCGGCAACGCctttgctcctgctgct
ttATCTAGGGGCAGGTCACCACGACTCCTAACTCGCAGCGCAGAGGGCAC
TCCATTGGTTTCTCGCAGCAACATTCTCCAACAATGTGGATTGATCTCTT
CGGCAGGCATCTTGGCTCTCACTGGTGGTCCATTCCTCCTAAATATTGAA
ACTGCATCAGCAGATGAagctggtgctgctggagAGCAATCTTATTTTGA
CGAGAAGTACAAAGTAGCTTTCGAGCATATTCCGGCCAAATGGGGAAGGA
CAGACACCACGATCGGGACGAACAACTTGGACCCCCGACGCATCGTGGTA
TTCAAGGACCCTTCTAGTGAGGCAAATGTCTTCATCGCGTACACGCCTGT
TCAACCTGATTTCACTACACTGGGAGCTTTCGGTAGTATCTTAGACGTGG
CCAAGACGATTGTTCCCAAAGGCCGCGGCGTCGAAAGCAAGCTCCTCAAC
TATGAAGGTCGAAAAGGTGCCTACTATTACGACTATGTCATTCAACCCGC
CGGCCAACCCAAGCGACACCTGACCACGCTCTTTGCTCTCATCACCATCA
GTGGCACTGGAGAGTGCCTCGCGACATATACCACCTCATGTTTAGAAGAT
CAATGGACAGTTTTGGAGCCTGTATTCGACAACATTACCAAGTCCTTCAG
AGTGGGCTTATGAATGCTCACTTTCACATGTCTCATACTCTTTCTCTTCG
CCCTCAGCCCGACCATGACGGCTGTCATCCCTGGACCCACCATCCGCACA
AGTTTCGAAGTTCTTTCAGTGCTGACTTTATTGGCATTCGGCAACGCctt
tgctcctgctgctttATCTAGGGGCAGGTCACCACGACTCCTAACTCGCA
GCGCAGAGGGCACTCCATTGGTTTCTCGCAGCAACATTCTCCAACAATGT
GGATTGATCTCTTCGGCAGGCATCTTGGCTCTCACTGGTGGTCCATTCCT
CCTAAATATTGAAACTGCATCAGCAGATGAagctggtgctgctggagAGC
AATCTTATTTTGACGAGAAGTACAAAGTAGCTTTCGAGCATATTCCGGCC
AAATGGGGAAGGACAGACACCACGATCGGGACGAACAACTTGGACCCCCG
ACGCATCGTGGTATTCAAGGACCCTTCTAGTGAGGCAAATGTCTTCATCG
CGTACACGCCTGTTCAACCTGATTTCACTACACTGGGAGCTTTCGGTAGT
ATCTTAGACGTGGCCAAGACGATTGTTCCCAAAGGCCGCGGCGTCGAAAG
CAAGCTCCTCAACTATGAAGGTCGAAAAGGTGCCTACTATTACGACTATG
TCATTCAACCCGCCGGCCAACCCAAGCGACACCTGACCACGCTCTTTGCT
CTCATCACCATCAGTGGCACTGGAGAGTGCCTCGCGACATATACCACCTC
ATGTTTAGAAGATCAATGGACAGTTTTGGAGCCTGTATTCGACAACATTA
CCAAGTCCTTCAGAGTGGGCTTATGAATGCTCACTTTCACATGTCTCATA
CTCTTTCTCTTCGCCCTCAGCCCGACCATGACGGCTGTCATCCCTGGACC
CACCATCCGCACAAGTTTCGAAGTTCTTTCAGTGCTGACTTTATTGGCAT
TCGGCAACGCctttgctcctgctgctttATCTAGGGGCAGGTCACCACGA
CTCCTAACTCGCAGCGCAGAGGGCACTCCATTGGTTTCTCGCAGCAACAT
TCTCCAACAATGTGGATTGATCTCTTCGGCAGGCATCTTGGCTCTCACTG
GTGGTCCATTCCTCCTAAATATTGAAACTGCATCAGCAGATGAagctggt
gctgctggagAGCAATCTTATTTTGACGAGAAGTACAAAGTAGCTTTCGA
GCATATTCCGGCCAAATGGGGAAGGACAGACACCACGATCGGGACGAACA
ACTTGGACCCCCGACGCATCGTGGTATTCAAGGACCCTTCTAGTGAGGCA
AATGTCTTCATCGCGTACACGCCTGTTCAACCTGATTTCACTACACTGGG
AGCTTTCGGTAGTATCTTAGACGTGGCCAAGACGATTGTTCCCAAAGGCC
GCGGCGTCGAAAGCAAGCTCCTCAACTATGAAGGTCGAAAAGGTGCCTAC
TATTACGACTATGTCATTCAACCCGCCGGCCAACCCAAGCGACACCTGAC
CACGCTCTTTGCTCTCATCACCATCAGTGGCACTGGAGAGTGCCTCGCGA
CATATACCACCTCATGTTTAGAAGATCAATGGACAGTTTTGGAGCCTGTA
TTCGACAACATTACCAAGTCCTTCAGAGTGGGCTTATGAATGCTCACTTT
CACATGTCTCATACTCTTTCTCTTCGCCCTCAGCCCGACCATGACGGCTG
TCATCCCTGGACCCACCATCCGCACAAGTTTCGAAGTTCTTTCAGTGCTG
ACTTTATTGGCATTCGGCAACGCctttgctcctgctgctttATCTAGGGG
CAGGTCACCACGACTCCTAACTCGCAGCGCAGAGGGCACTCCATTGGTTT
CTCGCAGCAACATTCTCCAACAATGTGGATTGATCTCTTCGGCAGGCATC
TTGGCTCTCACTGGTGGTCCATTCCTCCTAAATATTGAAACTGCATCAGC
AGATGAagctggtgctgctggagAGCAATCTTATTTTGACGAGAAGTACA
AAGTAGCTTTCGAGCATATTCCGGCCAAATGGGGAAGGACAGACACCACG
ATCGGGACGAACAACTTGGACCCCCGACGCATCGTGGTATTCAAGGACCC
TTCTAGTGAGGCAAATGTCTTCATCGCGTACACGCCTGTTCAACCTGATT
TCACTACACTGGGAGCTTTCGGTAGTATCTTAGACGTGGCCAAGACGATT
GTTCCCAAAGGCCGCGGCGTCGAAAGCAAGCTCCTCAACTATGAAGGTCG
AAAAGGTGCCTACTATTACGACTATGTCATTCAACCCGCCGGCCAACCCA
AGCGACACCTGACCACGCTCTTTGCTCTCATCACCATCAGTGGCACTGGA
GAGTGCCTCGCGACATATACCACCTCATGTTTAGAAGATCAATGGACAGT
TTTGGAGCCTGTATTCGACAACATTACCAAGTCCTTCAGAGTGGGCTTAT
GA

Synonyms

Publications