EWM21524.1, cds9151 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21524.1 vs. NCBI_GenBank
Match: gi|585101757|gb|EWM21524.1| (psbp domain-containing protein chloroplastic-like protein [Nannochloropsis gaditana]) HSP 1 Score: 550.051 bits (1416), Expect = 0.000e+0 Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0
Query: 1 MLTFTCLILFLFALSPTMTAVIPGPTIRTSFEVLSVLTLLAFGNAFAPAALSRGRSPRLLTRSAEGTPLVSRSNILQQCGLISSAGILALTGGPFLLNIETASADEAGAAGEQSYFDEKYKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPSSEANVFIAYTPVQPDFTTLGAFGSILDVAKTIVPKGRGVESKLLNYEGRKGAYYYDYVIQPAGQPKRHLTTLFALITISGTGECLATYTTSCLEDQWTVLEPVFDNITKSFRVGL 270
MLTFTCLILFLFALSPTMTAVIPGPTIRTSFEVLSVLTLLAFGNAFAPAALSRGRSPRLLTRSAEGTPLVSRSNILQQCGLISSAGILALTGGPFLLNIETASADEAGAAGEQSYFDEKYKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPSSEANVFIAYTPVQPDFTTLGAFGSILDVAKTIVPKGRGVESKLLNYEGRKGAYYYDYVIQPAGQPKRHLTTLFALITISGTGECLATYTTSCLEDQWTVLEPVFDNITKSFRVGL
Sbjct: 1 MLTFTCLILFLFALSPTMTAVIPGPTIRTSFEVLSVLTLLAFGNAFAPAALSRGRSPRLLTRSAEGTPLVSRSNILQQCGLISSAGILALTGGPFLLNIETASADEAGAAGEQSYFDEKYKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPSSEANVFIAYTPVQPDFTTLGAFGSILDVAKTIVPKGRGVESKLLNYEGRKGAYYYDYVIQPAGQPKRHLTTLFALITISGTGECLATYTTSCLEDQWTVLEPVFDNITKSFRVGL 270
BLAST of EWM21524.1 vs. NCBI_GenBank
Match: gi|298709150|emb|CBJ31094.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 103.99 bits (258), Expect = 2.685e-23 Identity = 55/154 (35.71%), Postives = 89/154 (57.79%), Query Frame = 0
Query: 113 QSYFDEKYKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPSSE-ANVFIAYTPVQPDFTTLGAFGSILDVAKTIVPKGRGVESKLLNYEGRKGAYYYDYVIQPAGQPKRHLTTLFALITISGTGECLATYTTSCLEDQWTVLEPVFDNITKS 265
Q++ D+ F+ +P W R D I R+IVV+ P++ AN F+AYTP + DFTTLG+FG++ +V+KT++P+ GV S++L K +Y YDY++ G+P++H+ T++ L G LAT T C E + + D++ S
Sbjct: 80 QTFTDDALGFNFD-VPDGWERNDAEISGR----RKIVVYTSPTTPGANAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASGVSSRMLESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQ---LATITAQCNESDYAKVGKTIDSLIAS 225
BLAST of EWM21524.1 vs. NCBI_GenBank
Match: gi|922853831|gb|KOO22412.1| (psbp domain-containing protein chloroplastic-like protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 100.523 bits (249), Expect = 4.036e-22 Identity = 61/172 (35.47%), Postives = 90/172 (52.33%), Query Frame = 0
Query: 107 AGAAGEQSYFDEKYKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPSSEA-NVFIAYTPVQPDFTTLGAFGSILDVAKTIVPK-----------GRGVESKLLNYEGRKGAYYYDYVIQPAGQPKRHLTTLFALITISGTGECLATYTTSCLEDQWTVLEPVFDNITKSF 266
A +A SY DE+Y V+F +P + + D RR+V DP+ + NVFIA+TP++PD+T+LG+FG+I + T++P+ G +E +L KG++ YDY IQ G P RHL +L A I G L T T CLE + + F I +S+
Sbjct: 49 AASALPTSYKDERYGVSF-LLPEGYVMKPQELA----DGRRLVTATDPNDDTTNVFIAFTPIRPDYTSLGSFGTIDFIGSTLLPQCGSNGACAFASGDDIEGVMLEQASVKGSFVYDYTIQQQGGPMRHLRSLLA-IKADGAASVLITLTAQCLEPKHAAVAATFKAIIESY 214
BLAST of EWM21524.1 vs. NCBI_GenBank
Match: gi|1072235928|gb|OEU20656.1| (hypothetical protein FRACYDRAFT_267716 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 99.3673 bits (246), Expect = 1.902e-21 Identity = 59/165 (35.76%), Postives = 94/165 (56.97%), Query Frame = 0
Query: 113 QSYFDEKYKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPSSEAN--VFIAYTPVQPDFTTLGAFGSILDVAK-TIVPKG-----RGVESKLLNYEGRKGAYYYDYVIQPAGQPKRHLTTLFALITIS--GTGECLATYTTSCLEDQWTVLEPVFDNITKSFR 267
+Y DE K + + +P+ W + + T+ D R+I ++ P S+ +FIAYTPV+ DFTTLG+FGS+ +V + TI+PK GV++ +L+ +K AY++DYV QPK H T+F+L + G G L T T E + ++P+F I S++
Sbjct: 79 NNYKDEACKFSID-VPSDWIKNENTLP----DRRKIDIYFKPDSDQKTLMFIAYTPVRSDFTTLGSFGSVDEVGQSTILPKSDLMGKDGVDATMLSAVAKKQAYFFDYVQTVPSQPKTHFQTIFSLAVEANGGKGNVLVTITVQAPEADYDSMKPLFTKILDSYK 238
BLAST of EWM21524.1 vs. NCBI_GenBank
Match: gi|219115451|ref|XP_002178521.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410256|gb|EEC50186.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 97.4413 bits (241), Expect = 8.534e-21 Identity = 62/162 (38.27%), Postives = 94/162 (58.02%), Query Frame = 0
Query: 115 YFDEKYKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPS-SEANVFIAYTPVQPDFTTLGAFGSILDV-AKTIVPK----GRGVESKLLNYEGRKGAYYYDY-VIQPAGQPKRHLTTLFALI--TISGTGECLATYTTSCLEDQW-TVLEPVFDNITKSF 266
+ D ++ + +P++W RT+ + D R IVV+ DP+ + A+VF+AYTPV+ DFT+LG+FGS+ V A+TI+PK G VE+ +L +K AY++DY P QP H T+F L G G L T T C E+ + T + +FD+I S+
Sbjct: 63 FLDSRHGFTVD-VPSQWSRTEQQLS----DRRTIVVWTDPADARASVFVAYTPVRDDFTSLGSFGSVDQVAAQTILPKAQIAGVDVEATMLAAVSQKQAYFFDYRQAVPNVQPPTHFRTIFTLQQGATGGAGAVLVTLTAQCPEELYATKYQSLFDSILDSY 219
BLAST of EWM21524.1 vs. NCBI_GenBank
Match: gi|551579203|ref|XP_005775160.1| (hypothetical protein EMIHUDRAFT_95376 [Emiliania huxleyi CCMP1516] >gi|485627104|gb|EOD22731.1| hypothetical protein EMIHUDRAFT_95376 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 83.9593 bits (206), Expect = 6.316e-16 Identity = 50/153 (32.68%), Postives = 77/153 (50.33%), Query Frame = 0
Query: 120 YKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPSS--EANVFIAYTPVQPDFTTLGAFGSILDVAKTIVPKGRGVESKLLNYEGRKGAYYYDYVIQPAGQPKRHLTTLFALITISGTGECLATYTTSCLEDQWTVLEPVFDNITKSFRVGL 270
Y+V F PA W ++ + + R + + DP+ ANV + + P+ D+T+LG+FG+ V +++P GAY YDY IQ G+ RHL TLFA+ T G G L T T C E ++ L+P+F + +S+ L
Sbjct: 67 YQVTFG-APAGWPVSEQELQGS----RYLYIATDPAEPDSANVVLTFQPLAADYTSLGSFGTQQLVGNSLMP--------------HLGAYTYDYTIQQTGKAPRHLRTLFAVQTEEGRGRRLVTLTAQCYESKYAELKPMFQKVLESYSTSL 200
BLAST of EWM21524.1 vs. NCBI_GenBank
Match: gi|224013736|ref|XP_002296532.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220968884|gb|EED87228.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 80.8777 bits (198), Expect = 2.496e-14 Identity = 60/169 (35.50%), Postives = 86/169 (50.89%), Query Frame = 0
Query: 127 IPAKWGRTDTTIGTNNLDPRRIVVF----KDPSSEAN-----VFIAYTPVQPDFTTLGAFGSILDVAK-TIVPKGRGV----ESKLLNYEGRKGAYYYDYVIQP-----AGQPKR---------HLTTLFALITISGT-GECLATYTTSCLEDQWTVLEPVFDNITKSF 266
IP+ W +T T L RR +F S+E N +FIAYTP++ DFT+L +FGS+ VA+ TI+PKG V +SK+L+ + AYY+DYV P AG H T+F L+ + T G L T T E+++ L+ +FD I S+
Sbjct: 104 IPSSWEQT-----TQKLSGRRKAIFFTDTNTASNENNAIDTLLFIAYTPIRDDFTSLASFGSVDQVAQSTILPKGELVGAEDDSKMLSATSKNNAYYFDYVSTPVVPVEAGSGSSALTKKLNPMHFRTIFTLLPLKDTAGLTLVTVTMQTTEEKYGGLKGLFDEIVGSY 267
BLAST of EWM21524.1 vs. NCBI_GenBank
Match: gi|971509774|dbj|GAQ88443.1| (PsbP domain-containing protein 3 [Klebsormidium nitens]) HSP 1 Score: 78.9518 bits (193), Expect = 1.143e-13 Identity = 58/205 (28.29%), Postives = 93/205 (45.37%), Query Frame = 0
Query: 71 SRSNILQQCGLISSAGILALTGGPFLLNIETASADEAGAAGEQSYFDEKYKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPSSEANVFIAYTPVQPDFTTLGAFGSILDVAKTIV-------PKGRGVESKLLNYEGRKGAYYYDYVIQPAGQPKRHLTTLFALITISGTGECLATYTTSCLEDQWTVLEPVFDNITKSFRV 268
SR +LQ ++ AG P A+A E G+ Y D K IPA W + + G + R + FK+ ++ NV + TP+ D+T +G+FG+ +T+V K +G E+KLL+ + + G Y+ +Y Q GQ KRHL + + GT L T T E+++ V + + SF +
Sbjct: 71 SRREVLQALASLAVAGATGACCQP-------AAAGEGGSTQFLPYMDSDGKFGLS-IPADWAQGE---GKASSQRRVVAFFKEGDTDTNVNVVITPLSADYTKMGSFGTAEAFGETLVNGLDRSWAKPKGPEAKLLDAKTKNGRYFVEYTFQAPGQMKRHLMSSIGM-GFDGTYNRLYTVTAQAREEEFAQYAGVLNKVLSSFEL 263
BLAST of EWM21524.1 vs. NCBI_GenBank
Match: gi|1210519553|dbj|GAX21677.1| (hypothetical protein FisN_29Hh117 [Fistulifera solaris]) HSP 1 Score: 75.0998 bits (183), Expect = 1.403e-12 Identity = 55/161 (34.16%), Postives = 82/161 (50.93%), Query Frame = 0
Query: 116 FDEKYKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPSSEANVF-IAYTPVQPDFTTLGAFGSILDV-AKTIVPKG--RGVE----SKLLNYEGRKGAYYYDYVIQPAGQPKRHLTTLFALI--TISGTGECLATYTTSCLEDQWTVLEPVFDNITKSF 266
FD+ + +P +W + + D R +++++DP+ IAYTPV+ DFT+L +FGS+ V A+TI+PKG G E +K+L+ KGAY++DY Q H +FAL G G L T T E ++ VL+ D I SF
Sbjct: 57 FDDPIRNFSIQVPTQWTFSKQILR----DRRELLLWQDPADAWTALTIAYTPVRDDFTSLASFGSVDQVAAQTILPKGALAGSEDDPFAKMLSATSAKGAYFFDYR-QTVPGTLTHFRAIFALQQGATGGAGSILVTITAQTPESRYPVLQKTLDAIVDSF 212
BLAST of EWM21524.1 vs. NCBI_GenBank
Match: gi|1210526410|dbj|GAX14898.1| (hypothetical protein FisN_29Lh117 [Fistulifera solaris]) HSP 1 Score: 73.1738 bits (178), Expect = 8.659e-12 Identity = 56/167 (33.53%), Postives = 87/167 (52.10%), Query Frame = 0
Query: 116 FDEKYKVAFEHIPAKWGRTDTTIGTNNL--DPRRIVVFKDPSS-EANVFIAYTPVQPDFTTLGAFGSILDV-AKTIVPKG--RGVE----SKLLNYEGRKGAYYYDYV----IQPAGQPKRHLTTLFALI--TISGTGECLATYTTSCLEDQWTVLEPVFDNITKSF 266
FD+ + +P++W I +N + D R +++++DP+ + IAYTP++ DFT+L +FGS+ V A+TI+PKG G E +K+L+ K AY++DY + G P H +FAL G G L T T E ++ VL+ D I SF
Sbjct: 61 FDDPVRGFSLMVPSEW------IFSNKVLRDRRELLLWQDPTDGRTALTIAYTPIRDDFTSLASFGSVDQVAAQTILPKGALAGFEDDPFAKMLSATSAKQAYFFDYRQTVPLTDEGTPT-HFRAIFALQQGATGGAGSMLVTITAQTPESRYPVLQKTLDAIVDSF 220 The following BLAST results are available for this feature:
BLAST of EWM21524.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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