EWM21524.1, cds9151 (CDS) Nannochloropsis gaditana

Overview
NameEWM21524.1
Unique Namecds9151
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:31708..31871 +
Alignment locationKK037252.1:31975..32305 +
Alignment locationKK037252.1:32515..32596 +
Alignment locationKK037252.1:32768..33003 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21524.1
Productpsbp domain-containing protein chloroplastic-like protein
Orig transcript idgnl|cribi|Naga_100204g5.5776.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:31708..31871 +
KK037252.1supercontigKK037252.1:31975..32305 +
KK037252.1supercontigKK037252.1:32515..32596 +
KK037252.1supercontigKK037252.1:32768..33003 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0009579thylakoid
GO:0016020membrane
GO:0019898extrinsic component of membrane
GO:0009654photosystem II oxygen evolving complex
GO:0009523photosystem II
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005509calcium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR016123Mog1/PsbP_a/b/a-sand
IPR002683PSII_PsbP
Homology
BLAST of EWM21524.1 vs. NCBI_GenBank
Match: gi|585101757|gb|EWM21524.1| (psbp domain-containing protein chloroplastic-like protein [Nannochloropsis gaditana])

HSP 1 Score: 550.051 bits (1416), Expect = 0.000e+0
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0
Query:    1 MLTFTCLILFLFALSPTMTAVIPGPTIRTSFEVLSVLTLLAFGNAFAPAALSRGRSPRLLTRSAEGTPLVSRSNILQQCGLISSAGILALTGGPFLLNIETASADEAGAAGEQSYFDEKYKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPSSEANVFIAYTPVQPDFTTLGAFGSILDVAKTIVPKGRGVESKLLNYEGRKGAYYYDYVIQPAGQPKRHLTTLFALITISGTGECLATYTTSCLEDQWTVLEPVFDNITKSFRVGL 270
            MLTFTCLILFLFALSPTMTAVIPGPTIRTSFEVLSVLTLLAFGNAFAPAALSRGRSPRLLTRSAEGTPLVSRSNILQQCGLISSAGILALTGGPFLLNIETASADEAGAAGEQSYFDEKYKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPSSEANVFIAYTPVQPDFTTLGAFGSILDVAKTIVPKGRGVESKLLNYEGRKGAYYYDYVIQPAGQPKRHLTTLFALITISGTGECLATYTTSCLEDQWTVLEPVFDNITKSFRVGL
Sbjct:    1 MLTFTCLILFLFALSPTMTAVIPGPTIRTSFEVLSVLTLLAFGNAFAPAALSRGRSPRLLTRSAEGTPLVSRSNILQQCGLISSAGILALTGGPFLLNIETASADEAGAAGEQSYFDEKYKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPSSEANVFIAYTPVQPDFTTLGAFGSILDVAKTIVPKGRGVESKLLNYEGRKGAYYYDYVIQPAGQPKRHLTTLFALITISGTGECLATYTTSCLEDQWTVLEPVFDNITKSFRVGL 270          
BLAST of EWM21524.1 vs. NCBI_GenBank
Match: gi|298709150|emb|CBJ31094.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 103.99 bits (258), Expect = 2.685e-23
Identity = 55/154 (35.71%), Postives = 89/154 (57.79%), Query Frame = 0
Query:  113 QSYFDEKYKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPSSE-ANVFIAYTPVQPDFTTLGAFGSILDVAKTIVPKGRGVESKLLNYEGRKGAYYYDYVIQPAGQPKRHLTTLFALITISGTGECLATYTTSCLEDQWTVLEPVFDNITKS 265
            Q++ D+     F+ +P  W R D  I       R+IVV+  P++  AN F+AYTP + DFTTLG+FG++ +V+KT++P+  GV S++L     K +Y YDY++   G+P++H+ T++ L    G    LAT T  C E  +  +    D++  S
Sbjct:   80 QTFTDDALGFNFD-VPDGWERNDAEISGR----RKIVVYTSPTTPGANAFVAYTPARGDFTTLGSFGTLDEVSKTVLPEASGVSSRMLESYTYKNSYVYDYIVDQEGRPEKHIKTMWVLFPEQGQ---LATITAQCNESDYAKVGKTIDSLIAS 225          
BLAST of EWM21524.1 vs. NCBI_GenBank
Match: gi|922853831|gb|KOO22412.1| (psbp domain-containing protein chloroplastic-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 100.523 bits (249), Expect = 4.036e-22
Identity = 61/172 (35.47%), Postives = 90/172 (52.33%), Query Frame = 0
Query:  107 AGAAGEQSYFDEKYKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPSSEA-NVFIAYTPVQPDFTTLGAFGSILDVAKTIVPK-----------GRGVESKLLNYEGRKGAYYYDYVIQPAGQPKRHLTTLFALITISGTGECLATYTTSCLEDQWTVLEPVFDNITKSF 266
            A +A   SY DE+Y V+F  +P  +      +     D RR+V   DP+ +  NVFIA+TP++PD+T+LG+FG+I  +  T++P+           G  +E  +L     KG++ YDY IQ  G P RHL +L A I   G    L T T  CLE +   +   F  I +S+
Sbjct:   49 AASALPTSYKDERYGVSF-LLPEGYVMKPQELA----DGRRLVTATDPNDDTTNVFIAFTPIRPDYTSLGSFGTIDFIGSTLLPQCGSNGACAFASGDDIEGVMLEQASVKGSFVYDYTIQQQGGPMRHLRSLLA-IKADGAASVLITLTAQCLEPKHAAVAATFKAIIESY 214          
BLAST of EWM21524.1 vs. NCBI_GenBank
Match: gi|1072235928|gb|OEU20656.1| (hypothetical protein FRACYDRAFT_267716 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 99.3673 bits (246), Expect = 1.902e-21
Identity = 59/165 (35.76%), Postives = 94/165 (56.97%), Query Frame = 0
Query:  113 QSYFDEKYKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPSSEAN--VFIAYTPVQPDFTTLGAFGSILDVAK-TIVPKG-----RGVESKLLNYEGRKGAYYYDYVIQPAGQPKRHLTTLFALITIS--GTGECLATYTTSCLEDQWTVLEPVFDNITKSFR 267
             +Y DE  K + + +P+ W + + T+     D R+I ++  P S+    +FIAYTPV+ DFTTLG+FGS+ +V + TI+PK       GV++ +L+   +K AY++DYV     QPK H  T+F+L   +  G G  L T T    E  +  ++P+F  I  S++
Sbjct:   79 NNYKDEACKFSID-VPSDWIKNENTLP----DRRKIDIYFKPDSDQKTLMFIAYTPVRSDFTTLGSFGSVDEVGQSTILPKSDLMGKDGVDATMLSAVAKKQAYFFDYVQTVPSQPKTHFQTIFSLAVEANGGKGNVLVTITVQAPEADYDSMKPLFTKILDSYK 238          
BLAST of EWM21524.1 vs. NCBI_GenBank
Match: gi|219115451|ref|XP_002178521.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410256|gb|EEC50186.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 97.4413 bits (241), Expect = 8.534e-21
Identity = 62/162 (38.27%), Postives = 94/162 (58.02%), Query Frame = 0
Query:  115 YFDEKYKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPS-SEANVFIAYTPVQPDFTTLGAFGSILDV-AKTIVPK----GRGVESKLLNYEGRKGAYYYDY-VIQPAGQPKRHLTTLFALI--TISGTGECLATYTTSCLEDQW-TVLEPVFDNITKSF 266
            + D ++    + +P++W RT+  +     D R IVV+ DP+ + A+VF+AYTPV+ DFT+LG+FGS+  V A+TI+PK    G  VE+ +L    +K AY++DY    P  QP  H  T+F L      G G  L T T  C E+ + T  + +FD+I  S+
Sbjct:   63 FLDSRHGFTVD-VPSQWSRTEQQLS----DRRTIVVWTDPADARASVFVAYTPVRDDFTSLGSFGSVDQVAAQTILPKAQIAGVDVEATMLAAVSQKQAYFFDYRQAVPNVQPPTHFRTIFTLQQGATGGAGAVLVTLTAQCPEELYATKYQSLFDSILDSY 219          
BLAST of EWM21524.1 vs. NCBI_GenBank
Match: gi|551579203|ref|XP_005775160.1| (hypothetical protein EMIHUDRAFT_95376 [Emiliania huxleyi CCMP1516] >gi|485627104|gb|EOD22731.1| hypothetical protein EMIHUDRAFT_95376 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 83.9593 bits (206), Expect = 6.316e-16
Identity = 50/153 (32.68%), Postives = 77/153 (50.33%), Query Frame = 0
Query:  120 YKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPSS--EANVFIAYTPVQPDFTTLGAFGSILDVAKTIVPKGRGVESKLLNYEGRKGAYYYDYVIQPAGQPKRHLTTLFALITISGTGECLATYTTSCLEDQWTVLEPVFDNITKSFRVGL 270
            Y+V F   PA W  ++  +  +    R + +  DP+    ANV + + P+  D+T+LG+FG+   V  +++P                GAY YDY IQ  G+  RHL TLFA+ T  G G  L T T  C E ++  L+P+F  + +S+   L
Sbjct:   67 YQVTFG-APAGWPVSEQELQGS----RYLYIATDPAEPDSANVVLTFQPLAADYTSLGSFGTQQLVGNSLMP--------------HLGAYTYDYTIQQTGKAPRHLRTLFAVQTEEGRGRRLVTLTAQCYESKYAELKPMFQKVLESYSTSL 200          
BLAST of EWM21524.1 vs. NCBI_GenBank
Match: gi|224013736|ref|XP_002296532.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220968884|gb|EED87228.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 80.8777 bits (198), Expect = 2.496e-14
Identity = 60/169 (35.50%), Postives = 86/169 (50.89%), Query Frame = 0
Query:  127 IPAKWGRTDTTIGTNNLDPRRIVVF----KDPSSEAN-----VFIAYTPVQPDFTTLGAFGSILDVAK-TIVPKGRGV----ESKLLNYEGRKGAYYYDYVIQP-----AGQPKR---------HLTTLFALITISGT-GECLATYTTSCLEDQWTVLEPVFDNITKSF 266
            IP+ W +T     T  L  RR  +F       S+E N     +FIAYTP++ DFT+L +FGS+  VA+ TI+PKG  V    +SK+L+   +  AYY+DYV  P     AG             H  T+F L+ +  T G  L T T    E+++  L+ +FD I  S+
Sbjct:  104 IPSSWEQT-----TQKLSGRRKAIFFTDTNTASNENNAIDTLLFIAYTPIRDDFTSLASFGSVDQVAQSTILPKGELVGAEDDSKMLSATSKNNAYYFDYVSTPVVPVEAGSGSSALTKKLNPMHFRTIFTLLPLKDTAGLTLVTVTMQTTEEKYGGLKGLFDEIVGSY 267          
BLAST of EWM21524.1 vs. NCBI_GenBank
Match: gi|971509774|dbj|GAQ88443.1| (PsbP domain-containing protein 3 [Klebsormidium nitens])

HSP 1 Score: 78.9518 bits (193), Expect = 1.143e-13
Identity = 58/205 (28.29%), Postives = 93/205 (45.37%), Query Frame = 0
Query:   71 SRSNILQQCGLISSAGILALTGGPFLLNIETASADEAGAAGEQSYFDEKYKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPSSEANVFIAYTPVQPDFTTLGAFGSILDVAKTIV-------PKGRGVESKLLNYEGRKGAYYYDYVIQPAGQPKRHLTTLFALITISGTGECLATYTTSCLEDQWTVLEPVFDNITKSFRV 268
            SR  +LQ    ++ AG       P       A+A E G+     Y D   K     IPA W + +   G  +   R +  FK+  ++ NV +  TP+  D+T +G+FG+     +T+V        K +G E+KLL+ + + G Y+ +Y  Q  GQ KRHL +   +    GT   L T T    E+++     V + +  SF +
Sbjct:   71 SRREVLQALASLAVAGATGACCQP-------AAAGEGGSTQFLPYMDSDGKFGLS-IPADWAQGE---GKASSQRRVVAFFKEGDTDTNVNVVITPLSADYTKMGSFGTAEAFGETLVNGLDRSWAKPKGPEAKLLDAKTKNGRYFVEYTFQAPGQMKRHLMSSIGM-GFDGTYNRLYTVTAQAREEEFAQYAGVLNKVLSSFEL 263          
BLAST of EWM21524.1 vs. NCBI_GenBank
Match: gi|1210519553|dbj|GAX21677.1| (hypothetical protein FisN_29Hh117 [Fistulifera solaris])

HSP 1 Score: 75.0998 bits (183), Expect = 1.403e-12
Identity = 55/161 (34.16%), Postives = 82/161 (50.93%), Query Frame = 0
Query:  116 FDEKYKVAFEHIPAKWGRTDTTIGTNNLDPRRIVVFKDPSSEANVF-IAYTPVQPDFTTLGAFGSILDV-AKTIVPKG--RGVE----SKLLNYEGRKGAYYYDYVIQPAGQPKRHLTTLFALI--TISGTGECLATYTTSCLEDQWTVLEPVFDNITKSF 266
            FD+  +     +P +W  +   +     D R +++++DP+       IAYTPV+ DFT+L +FGS+  V A+TI+PKG   G E    +K+L+    KGAY++DY  Q       H   +FAL      G G  L T T    E ++ VL+   D I  SF
Sbjct:   57 FDDPIRNFSIQVPTQWTFSKQILR----DRRELLLWQDPADAWTALTIAYTPVRDDFTSLASFGSVDQVAAQTILPKGALAGSEDDPFAKMLSATSAKGAYFFDYR-QTVPGTLTHFRAIFALQQGATGGAGSILVTITAQTPESRYPVLQKTLDAIVDSF 212          
BLAST of EWM21524.1 vs. NCBI_GenBank
Match: gi|1210526410|dbj|GAX14898.1| (hypothetical protein FisN_29Lh117 [Fistulifera solaris])

HSP 1 Score: 73.1738 bits (178), Expect = 8.659e-12
Identity = 56/167 (33.53%), Postives = 87/167 (52.10%), Query Frame = 0
Query:  116 FDEKYKVAFEHIPAKWGRTDTTIGTNNL--DPRRIVVFKDPSS-EANVFIAYTPVQPDFTTLGAFGSILDV-AKTIVPKG--RGVE----SKLLNYEGRKGAYYYDYV----IQPAGQPKRHLTTLFALI--TISGTGECLATYTTSCLEDQWTVLEPVFDNITKSF 266
            FD+  +     +P++W      I +N +  D R +++++DP+     + IAYTP++ DFT+L +FGS+  V A+TI+PKG   G E    +K+L+    K AY++DY     +   G P  H   +FAL      G G  L T T    E ++ VL+   D I  SF
Sbjct:   61 FDDPVRGFSLMVPSEW------IFSNKVLRDRRELLLWQDPTDGRTALTIAYTPIRDDFTSLASFGSVDQVAAQTILPKGALAGFEDDPFAKMLSATSAKQAYFFDYRQTVPLTDEGTPT-HFRAIFALQQGATGGAGSMLVTITAQTPESRYPVLQKTLDAIVDSF 220          
The following BLAST results are available for this feature:
BLAST of EWM21524.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101757|gb|EWM21524.1|0.000e+0100.00psbp domain-containing protein chloroplastic-like ... [more]
gi|298709150|emb|CBJ31094.1|2.685e-2335.71conserved unknown protein [Ectocarpus siliculosus][more]
gi|922853831|gb|KOO22412.1|4.036e-2235.47psbp domain-containing protein chloroplastic-like ... [more]
gi|1072235928|gb|OEU20656.1|1.902e-2135.76hypothetical protein FRACYDRAFT_267716 [Fragilario... [more]
gi|219115451|ref|XP_002178521.1|8.534e-2138.27predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|551579203|ref|XP_005775160.1|6.316e-1632.68hypothetical protein EMIHUDRAFT_95376 [Emiliania h... [more]
gi|224013736|ref|XP_002296532.1|2.496e-1435.50predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|971509774|dbj|GAQ88443.1|1.143e-1328.29PsbP domain-containing protein 3 [Klebsormidium ni... [more]
gi|1210519553|dbj|GAX21677.1|1.403e-1234.16hypothetical protein FisN_29Hh117 [Fistulifera sol... [more]
gi|1210526410|dbj|GAX14898.1|8.659e-1233.53hypothetical protein FisN_29Lh117 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9181rna9181Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications