rna9179, rna9179 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9179
Unique Name	rna9179
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1940
Alignment location	KK037252.1:27113..29297 -

Link to JBrowse

Properties


Property Name	Value
Product	Zinc finger, RING-type, conserved site
Orig transcript id	gnl\|cribi\|Naga_100204g3.5772.mrna
Orig protein id	gnl\|cribi\|Naga_100204g3.5772
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:27113..29297 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100204g3	gene8904	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21520.1	cds9149	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9179	rna9179-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:27113..29297-
coding sequence from alignment at KK037252.1:27113..29297-

mRNA sequence

>rna9179 ID=rna9179|Name=rna9179|organism=Nannochloropsis gaditana|type=mRNA|length=1940bp
GTACACAGGTAAAGAGCTCCTCTAGAGTGTTGTGGAGAGAGAAGCAGAAA
TATCGTGCAAAGAGAAGGCCGCATTTCCATAGGGCCCCACAGCGAAATAG
GGTGTGATCATGGTGTTGCAGGAGCTCGGTGACAAGCTTACGGGGGCTCT
ACGCCGGCTGCAGACCACCACGGTCGTCAACGACGACGTCCTCAACGACC
TGCTCCAGGACGTATGCCGTGCGTTAGTCGAATCCGATGTGAATATCAAG
GTAGTGGCGACCCTTAGAAAGGGCATCAAGGAGAAAGTCAACCTTGCAGA
TGCCCCCGCTGGCCTGAACAGACGGAAAATGGTGCAGCGGGCGGTGATGG
AGGAATTGGTCCGCCTGGTCGACTCGGGAACAAAGCCGTACCAAATGAAG
AAGGGAAAGTCGAACGTGATCATGTTTGTGGGCTTGCAAGGCTCGGGGAA
AACTACCACCATTGCCAAATACGCCAACTATTACCAGCGGAAGGGATGGA
AGACGTGCATGGTGTGTGCCGATACCTTTCGTGCCGGAGCCTTCGATCAG
CTGAAGCAGAATGCGACAAAACTCCGTGTGCCTTTTTACGGCTCCTACAC
GGAGGCGGACCCGGTACGGATCGCCGAGGAGGGCGTCCAGCAGTTCCGTT
CAGAGGGATACGAGGTTATCATTGTCGATACCTCGGGCCGGCACAAGCAG
GAAGAAGCCCTGTTTGAGGAGATGAAAGAGATCCAAGCGGCGGTCCGTCC
CGACAACGTGGTGTACGTCATGGACGCCACCCAGGGCCAAGCCGTCTTCG
ACCAGGCACAGGGTTTCCACCAGGCCGCCGCGGTGGGCTCCGTCATTGTC
ACCAAGCTGGACGGGCACGCCAAGGGGGGAGGCGCCTTGTCGGCCGTGGC
GGCGACGGGGGCGCCTATCATATTTTTGGGCTCGGGGGAGCATTTTGACG
ACCTGGACGTCTTCAACCCCGGGAGTTTCATCAGTCGGTTGCTGGGCTTG
GGGGACATGCGGGGTTTTTTGGAGGAAGTGAGCAGCCTGGGGGCGAGGGA
AGGAGGGAAAGAGAGGCAGGAGGCCATGGCCCAGCGGCTCGTCAAGGGCC
AGTTCACCCTCCGCGACATGTACGAGCAGTTTGAGAACGTGATGAAGCTG
GGGCCCCTTTCCAAGGTCATGGGCATGCTGCCGGGCTTTCCCTCTTTTCT
GATGGGGGGGGGGGAAGGAGGGAGGGGGGGGCAGGACGAAGCTGCCACGG
GCCGGCTGAAGCGTTTCTTGACCATGATGGACAGCATGACGGACGCGGAG
CTCGATGGGAAGGTGGACCTGAACAAGAGCGAGAGCCGCGTGAACCGGAT
TGCTCGAGGAAGCGGGGCACACCCGATGGAAGTCCAATTTTTGCTCAAGA
CGTACGCGCAATTCTCGCAAATGTTCAAGAAGATGGGCCCGATGATGTTG
AAAGGCGGGGAGGGTGGCATACAGCGGCAGATGGCACGCAACCCGGGAGG
CGTGATGAATCAGTTGAGCAAGGCGGTGGACCCGCGAATGCTACAGCAGA
TGGGAGGCGCAAAAGGAATGATGGACATGATGAAAGCGATGGGAGGAGGA
ATGGGGGGGGGGCTTGCGGACATGCTGCAGAACTTGGGGGGAGGGGGGGA
GGGAGAGGGGGAGGAAGAGGGAGTGGACGAGGAGGGGGAGGGATGGATCC
AGAACAGATGCAGGCGCAGATGGCGCAAATGGAAGATATGATGAAAAGTA
TGGGAATGGGTGGAGGAGGGAAAGGAGGTGGAGGGTTCCCTTTCTGACGA
ACCGAACACGGTGGGGATACTCCAATAACAAAATAACAACAATGCGATTT
GCTTCGGTAGCGCGGCAATTTGTGACATGCCCGCTTAAAATATAAATGGA
GTCTTTGTTGATGTGAAGCGGATAATTTAGAAGGCACTAA

protein sequence of rna9179

>rna9179-protein ID=rna9179-protein|Name=rna9179|organism=Nannochloropsis gaditana|type=polypeptide|length=588bp
MPFHLKTTHSVSFCRLARTIFIVLLACKPIAGARNRSSRRQALHKALSGG
PREPRHKILGKRYRKELNKEQEGYGLLSLENVENRAMLIIPEPLTDDAPP
PPPEGDADDDNDGDEGRLSSAPSISAGRNKDVSSSTIELAQDKEEEPDSL
PENESNDKGILKEKTAAPGRDERRKGDTRRRSTLIVPEPLTDDAPPPPPE
GDTDDDNNGDGGRFFSAASTSRRGEQAEDTENNASNITSSILITPSSQSN
KSSNGDDGDIHNLPPIVIPVPDYILNTGKGPLVTDRGDINDENRVVKLQG
ESAASSIKQREGEDRQKTIQQERKIKDADDEEMDDQEGWDEVESDMDGSA
GEKLVSADSAITNEGRISKLANISAFFLFGGLLLILAYHLSRRFRPSPDV
TALDTQPQLNMASPRITFASVAQSTSGTQAAPPVFHLAPTYTKRASERQG
GGRSRSSSFTLSSPPSASTTGASASPSYQQGRRGSSTNPLRLQHLNHHNL
AQGPPSSALHRNLSPDQEVDISGQGAAEVRGMSIYREAPCSACGLQPRTH
ALVPCSHLVCESCASTASFCVTCKSAVVSRNWVMSPSR

mRNA from alignment at KK037252.1:27113..29297-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9179 ID=rna9179|Name=rna9179|organism=Nannochloropsis gaditana|type=mRNA|length=2185bp|location=Sequence derived from alignment at KK037252.1:27113..29297- (Nannochloropsis gaditana)
GACAGCGCCTTACCCACCAAAATTTGACCATTGGAGAAGGAAGACAACAA
GCGTTCTTGAATCCTTCCACGAGAGGAAATGCCATTCCATTTAAAGACCA
CACATTCCGTGTCCTTTTGTCGTTTGGCTCGAACTATCTTTATCGTCTTG
TTGGCATGTAAGCCGATCGCGGGAGCTCGCAATCGAAGTTCCCGACGTCA
GGCTTTGCACAAGGCACTCTCGGGTGGGCCTCGTGAGCCACGACACAAAA
TACTTGGCAAGCGATACCGTAAGGAGCTTAATAAAGAGCAAGAAGGGTAT
GGACTACTGAGTCTCGAAAATGTGGAAAACAGGGCTATGTTGATTATTCC
AGAGCCTTTAACCGATGACGCTCCTCCGCCTCCTCCGGAAGGTGACGCAG
ATGACGACAACGATGGGGACGAAGGAAGGTTATCAAGTGCTCCGAGTATA
TCGGCAGGGAGGAATAAAGACGTCTCATCCTCTACTATAGAGCTGGCTCA
AGACAAGGAGGAGGAGCCTGATTCACTCCCTGAGAACGAGTCCAACGATA
AGGGTATCTTGAAGGAGAAAACGGCCGCCCCTGGACGTGATGAACGACGT
AAGGGGGACACAAGGAGGAGAAGCACATTAATTGTTCCAGAGCCCTTGAC
AGATGACGCTCCTCCGCCTCCTCCGGAAGGTGACACGGATGATGACAATA
ATGGGGACGGGGGAAGATTTTTCAGTGCAGCAAGTACATCGCGACGTGGG
GAGCAAGCGGAAGATACAGAGAACAACGCCAGCAACATCACATCCTCTAT
TCTCATCACCCCTTCGTCGCAGTCGAACAAGAGTTCAAATGGTGATGACG
GAGACATTCATAATCTCCCTCCCATAGTGATTCCTGTTCCAGACTATATT
TTAAACACCGGCAAAGGCCCTCTGGTCACAGATAGGGGGGACATTAATGA
CGAAAACCGCGTGGTCAAATTGCAAGGAGAGAGTGCCGCGTCATCGATCA
AACAGCGGGAAGGTGAGGATCGCCAGAAAACAATCCAACAGGAGAGAAAA
ATAAAGGATGCAGACGATGAGGAGATGGACGACCAGGAGGGATGGGACGA
GGTGGAAAGCGACATGGATGGCAGCGCGGGCGAGAAATTGGTCAGCGCGG
ACTCGGCGATCACCAATGAAGGCAGGATAAGCAAGCTTGCCAATATTAGT
GCCTTTTTCCTATTCGGTGGTTTGCTCCTGATACTTGCTTACCACCTCTC
TCGACGGTTTAGGCCCTCCCCTGACGTAACTGCCCTCGACACGCAACCAC
AGCTCAACATGGCCTCTCCTCGCATCACTTTTGCCTCGGTGGCGCAGTCG
ACCAGCGGGACCCAAGCAGCCCCCCCTGTCTTCCATTTGGCACCCACGTA
TACCAAGAGAGCAAGCGAACGCCAGGGAGGCGGTCGAAGCCGGTCTTCTT
CCTTTACCTTGTCATCGCCGCCCTCCGCCTCGACCACAGGAGCTTCCGCC
TCCCCGTCGTACCAGCAGGGACGGCGCGGTAGCAGCACAAATCCTTTGCG
GTTACAGCACTTGAACCACCACAATCTGGCCCAGGGACCTCCCTCCTCGG
CTCTCCATCGGAATTTATCCCCAGACCAGGAAGTGGACATATCAGGACAA
GGAGCAGCGGAGGTGCGAGGTATGAGTATATACAGGGAGGCCCCCTGCTC
TGCTTGCGGTCTTCAGCCCAGGACGCACGCGCTGGTGCCTTGTTCTCATC
TGGTGTGTGAATCCTGTGCGTCCACCGCGTCCTTTTGCGTCACGTGTAAG
AGTGCAGTGGTGAGTCGAAACTGGGTCATGAGCCCCTCCCGCTAGCCGAG
GACGATGGAGAGGGAAGACCATGCGGCGCAAGTGCAGGCATGTGTCTTTT
GGTCTTATACAATTCAGCGTTTCAGCTCATGCGCGGTTTGTCGTCGTAAC
TAAGGCACTTACATTGAAGGTCCATCAGACTTCGATAAATGGCCCGAAGT
AGAGCAGGAATGCCTTGTAGTGTGTGTATGTATACATGTCGGTAAAGTCT
GAGTGGTCTAAGAAACGGTTAGGCTATCCCAAAGTCAAAAATAGGCCCGG
AAGAAGAAATAATGCGTATTAGATGTGATGGTGGTGTGTTGCGAAGTACA
CATATTACTTGATTTCTTCATAAAGCATTCTCAGA

Coding sequence (CDS) from alignment at KK037252.1:27113..29297-

>rna9179 ID=rna9179|Name=rna9179|organism=Nannochloropsis gaditana|type=CDS|length=1767bp|location=Sequence derived from alignment at KK037252.1:27113..29297- (Nannochloropsis gaditana)
ATGCCATTCCATTTAAAGACCACACATTCCGTGTCCTTTTGTCGTTTGGC
TCGAACTATCTTTATCGTCTTGTTGGCATGTAAGCCGATCGCGGGAGCTC
GCAATCGAAGTTCCCGACGTCAGGCTTTGCACAAGGCACTCTCGGGTGGG
CCTCGTGAGCCACGACACAAAATACTTGGCAAGCGATACCGTAAGGAGCT
TAATAAAGAGCAAGAAGGGTATGGACTACTGAGTCTCGAAAATGTGGAAA
ACAGGGCTATGTTGATTATTCCAGAGCCTTTAACCGATGACGCTCCTCCG
CCTCCTCCGGAAGGTGACGCAGATGACGACAACGATGGGGACGAAGGAAG
GTTATCAAGTGCTCCGAGTATATCGGCAGGGAGGAATAAAGACGTCTCAT
CCTCTACTATAGAGCTGGCTCAAGACAAGGAGGAGGAGCCTGATTCACTC
CCTGAGAACGAGTCCAACGATAAGGGTATCTTGAAGGAGAAAACGGCCGC
CCCTGGACGTGATGAACGACGTAAGGGGGACACAAGGAGGAGAAGCACAT
TAATTGTTCCAGAGCCCTTGACAGATGACGCTCCTCCGCCTCCTCCGGAA
GGTGACACGGATGATGACAATAATGGGGACGGGGGAAGATTTTTCAGTGC
AGCAAGTACATCGCGACGTGGGGAGCAAGCGGAAGATACAGAGAACAACG
CCAGCAACATCACATCCTCTATTCTCATCACCCCTTCGTCGCAGTCGAAC
AAGAGTTCAAATGGTGATGACGGAGACATTCATAATCTCCCTCCCATAGT
GATTCCTGTTCCAGACTATATTTTAAACACCGGCAAAGGCCCTCTGGTCA
CAGATAGGGGGGACATTAATGACGAAAACCGCGTGGTCAAATTGCAAGGA
GAGAGTGCCGCGTCATCGATCAAACAGCGGGAAGGTGAGGATCGCCAGAA
AACAATCCAACAGGAGAGAAAAATAAAGGATGCAGACGATGAGGAGATGG
ACGACCAGGAGGGATGGGACGAGGTGGAAAGCGACATGGATGGCAGCGCG
GGCGAGAAATTGGTCAGCGCGGACTCGGCGATCACCAATGAAGGCAGGAT
AAGCAAGCTTGCCAATATTAGTGCCTTTTTCCTATTCGGTGGTTTGCTCC
TGATACTTGCTTACCACCTCTCTCGACGGTTTAGGCCCTCCCCTGACGTA
ACTGCCCTCGACACGCAACCACAGCTCAACATGGCCTCTCCTCGCATCAC
TTTTGCCTCGGTGGCGCAGTCGACCAGCGGGACCCAAGCAGCCCCCCCTG
TCTTCCATTTGGCACCCACGTATACCAAGAGAGCAAGCGAACGCCAGGGA
GGCGGTCGAAGCCGGTCTTCTTCCTTTACCTTGTCATCGCCGCCCTCCGC
CTCGACCACAGGAGCTTCCGCCTCCCCGTCGTACCAGCAGGGACGGCGCG
GTAGCAGCACAAATCCTTTGCGGTTACAGCACTTGAACCACCACAATCTG
GCCCAGGGACCTCCCTCCTCGGCTCTCCATCGGAATTTATCCCCAGACCA
GGAAGTGGACATATCAGGACAAGGAGCAGCGGAGGTGCGAGGTATGAGTA
TATACAGGGAGGCCCCCTGCTCTGCTTGCGGTCTTCAGCCCAGGACGCAC
GCGCTGGTGCCTTGTTCTCATCTGGTGTGTGAATCCTGTGCGTCCACCGC
GTCCTTTTGCGTCACGTGTAAGAGTGCAGTGGTGAGTCGAAACTGGGTCA
TGAGCCCCTCCCGCTAG

Synonyms

Publications