EWM21520.1, cds9149 (CDS) Nannochloropsis gaditana

Overview
NameEWM21520.1
Unique Namecds9149
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:27453..29219 -

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Properties
Property NameValue
Protein idEWM21520.1
ProductZinc finger, RING-type, conserved site
Orig transcript idgnl|cribi|Naga_100204g3.5772.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:27453..29219 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR017907Znf_RING_CS
IPR013083Znf_RING/FYVE/PHD
Homology
[Close]
BLAST of EWM21520.1 vs. NCBI_GenBank
Match: gi|585101753|gb|EWM21520.1| (Zinc finger, RING-type, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 1201.42 bits (3107), Expect = 0.000e+0
Identity = 588/588 (100.00%), Postives = 588/588 (100.00%), Query Frame = 0 
Query:    1 MPFHLKTTHSVSFCRLARTIFIVLLACKPIAGARNRSSRRQALHKALSGGPREPRHKILGKRYRKELNKEQEGYGLLSLENVENRAMLIIPEPLTDDAPPPPPEGDADDDNDGDEGRLSSAPSISAGRNKDVSSSTIELAQDKEEEPDSLPENESNDKGILKEKTAAPGRDERRKGDTRRRSTLIVPEPLTDDAPPPPPEGDTDDDNNGDGGRFFSAASTSRRGEQAEDTENNASNITSSILITPSSQSNKSSNGDDGDIHNLPPIVIPVPDYILNTGKGPLVTDRGDINDENRVVKLQGESAASSIKQREGEDRQKTIQQERKIKDADDEEMDDQEGWDEVESDMDGSAGEKLVSADSAITNEGRISKLANISAFFLFGGLLLILAYHLSRRFRPSPDVTALDTQPQLNMASPRITFASVAQSTSGTQAAPPVFHLAPTYTKRASERQGGGRSRSSSFTLSSPPSASTTGASASPSYQQGRRGSSTNPLRLQHLNHHNLAQGPPSSALHRNLSPDQEVDISGQGAAEVRGMSIYREAPCSACGLQPRTHALVPCSHLVCESCASTASFCVTCKSAVVSRNWVMSPSR 588
            MPFHLKTTHSVSFCRLARTIFIVLLACKPIAGARNRSSRRQALHKALSGGPREPRHKILGKRYRKELNKEQEGYGLLSLENVENRAMLIIPEPLTDDAPPPPPEGDADDDNDGDEGRLSSAPSISAGRNKDVSSSTIELAQDKEEEPDSLPENESNDKGILKEKTAAPGRDERRKGDTRRRSTLIVPEPLTDDAPPPPPEGDTDDDNNGDGGRFFSAASTSRRGEQAEDTENNASNITSSILITPSSQSNKSSNGDDGDIHNLPPIVIPVPDYILNTGKGPLVTDRGDINDENRVVKLQGESAASSIKQREGEDRQKTIQQERKIKDADDEEMDDQEGWDEVESDMDGSAGEKLVSADSAITNEGRISKLANISAFFLFGGLLLILAYHLSRRFRPSPDVTALDTQPQLNMASPRITFASVAQSTSGTQAAPPVFHLAPTYTKRASERQGGGRSRSSSFTLSSPPSASTTGASASPSYQQGRRGSSTNPLRLQHLNHHNLAQGPPSSALHRNLSPDQEVDISGQGAAEVRGMSIYREAPCSACGLQPRTHALVPCSHLVCESCASTASFCVTCKSAVVSRNWVMSPSR
Sbjct:    1 MPFHLKTTHSVSFCRLARTIFIVLLACKPIAGARNRSSRRQALHKALSGGPREPRHKILGKRYRKELNKEQEGYGLLSLENVENRAMLIIPEPLTDDAPPPPPEGDADDDNDGDEGRLSSAPSISAGRNKDVSSSTIELAQDKEEEPDSLPENESNDKGILKEKTAAPGRDERRKGDTRRRSTLIVPEPLTDDAPPPPPEGDTDDDNNGDGGRFFSAASTSRRGEQAEDTENNASNITSSILITPSSQSNKSSNGDDGDIHNLPPIVIPVPDYILNTGKGPLVTDRGDINDENRVVKLQGESAASSIKQREGEDRQKTIQQERKIKDADDEEMDDQEGWDEVESDMDGSAGEKLVSADSAITNEGRISKLANISAFFLFGGLLLILAYHLSRRFRPSPDVTALDTQPQLNMASPRITFASVAQSTSGTQAAPPVFHLAPTYTKRASERQGGGRSRSSSFTLSSPPSASTTGASASPSYQQGRRGSSTNPLRLQHLNHHNLAQGPPSSALHRNLSPDQEVDISGQGAAEVRGMSIYREAPCSACGLQPRTHALVPCSHLVCESCASTASFCVTCKSAVVSRNWVMSPSR 588
The following BLAST results are available for this feature:
BLAST of EWM21520.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585101753|gb|EWM21520.1|0.000e+0100.00Zinc finger, RING-type, conserved site [Nannochlor... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9179rna9179Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications