rna9168, rna9168 (mRNA) Nannochloropsis gaditana

Overview
Namerna9168
Unique Namerna9168
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length320
Alignment locationKK037251.1:476952..478070 +

Link to JBrowse

Properties
Property NameValue
Productpcs60p
Orig transcript idgnl|cribi|Naga_101422g2.5166.mrna
Orig protein idgnl|cribi|Naga_101422g2.5166
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:476952..478070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101422g2gene8893Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9168rna9168-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21536.1cds9138Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9168 ID=rna9168|Name=rna9168|organism=Nannochloropsis gaditana|type=mRNA|length=320bp
CGCCGTCCCCGGCCTCCTACGAACTGGTCATGGTCACCTTAGCAGAGAGT
GGGCGGCCGGGGTGGGAGATGGAGGCAGTCTCCCTGTTTTCCCGCCAAAA
TCCTCCCACGGCGGAAGGGTTCCGGGTCGCCTTGCGTGGACTCTACCGGG
CAGGTCGGCACGCGGAGGCCCTGCGTCTCTTGGCGACCGTGGGTGCCACC
TGTAATGTGGACCCAGACGACGGTTTGTTGAAGGCGGGTATGAAGGCAGC
GATGGGTCTGGGGGAGGAGGAAGCGCTGCCGCTCTTGCGGGCCGCGCTGA
CGGAGGCGGGAGGGGCGTGA
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protein sequence of rna9168

>rna9168-protein ID=rna9168-protein|Name=rna9168|organism=Nannochloropsis gaditana|type=polypeptide|length=134bp
MHECFLWLCAQTTHQRHRTYTKSMASTFVAPRTLRDVPHAESYPPGHSAL
VIPATPETPSYEVSYTALAHAVATVGKQLIPLLPAEKSEKVVALAMPNTL
AFPLGFLGAIYGGAAMAPLNPDYKEEEFRFYLEA
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mRNA from alignment at KK037251.1:476952..478070+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9168 ID=rna9168|Name=rna9168|organism=Nannochloropsis gaditana|type=mRNA|length=1119bp|location=Sequence derived from alignment at KK037251.1:476952..478070+ (Nannochloropsis gaditana)
ATGCACGAATGTTTTTTGTGGTTGGTAGGTTCATGCCGGTGCTGTCCATT
ATTCGAGCTGACATGTGGGAGGATGCTAGCAGACACGGAGGGGGTTGTTG
TGTCGCTAAATCGTTGTGTGCCGTCTCGCTTTCTTGTCGCAACTAGCTCG
GTGCGATGGGCGTGAATGGCACAGAGAGATGTTCCGCACGGAATTTCAAT
GGTTTTTAATGTCGAGGAAGGATTGCTCCTTCGGACTTGATCGTATACGT
GGCGTCGTGGCGGACTTCCATTCACCCGAGTCAGATCCTTTAACCCGTCT
AGAGCGCAGCCGTGGTGGTGCGTTTGTGTATGACTATCCTGTACCGATCA
TCCCAAAACGGGGGCGCAACATTGTGGAAATTCATCCTAATAGATCCCTT
CATGTTCATGTGCGTACCAGTGGAACCATGGCTGCAGTACAGGCACGGGG
TTCAGAAGGAGCGCTCTACAGGCAAAGGCTTCCGTCATGCTCCCCtcatc
acctccacccctcctccccccctcctagtGCGCACAGACGACACACCAAC
GACACAGGACGTACACGAAAAGCATGGCCTCAACCTTCGTGGCCCCCCGC
ACGCTTCGGGACGTGCCTCACGCAGAGTCCTACCCCCCGGGCCATTCAGC
CTTGGTCATCCCAGCCACTCCGGAGACGCCATCCTACGAGGTGTCGTACA
CGGCCCTCGCCCACGCGGTGGCCACGGTGGGGAAGCAGTTGATCCCTTTG
CTCCCCGCGGAGAAGTCGGAGAAGGTGAGGcagggacgtggaagggaaTG
GACTCCCTGCCACTGCCCCGACtggaccttccctccctccctcccgccct
ccctccctccttttctccctccctccctcttttcagGTGGTGGCGCTAGC
CATGCCGAAcaccctcgctttccccttAGGCTTTTTGGGCGCTATTTACG
GGGGAGCGGCCATGGCCCCCCTCAATCCCGACtacaaggaagaggaattt
CGGTTTTACCTGGaggtagggcgggagggcgggagggagggagggaaggt
agagggaggaaaaaagggtcgaggcgaaggagaggaagacgtcgACCCCT
GTCTCTCCCCTAGGCCTga
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Coding sequence (CDS) from alignment at KK037251.1:476952..478070+

>rna9168 ID=rna9168|Name=rna9168|organism=Nannochloropsis gaditana|type=CDS|length=1620bp|location=Sequence derived from alignment at KK037251.1:476952..478070+ (Nannochloropsis gaditana)
ATGCACGAATGTTTTTTGTGGTTGtGCGCACAGACGACACACCAACGACA
CAGGACGTACACGAAAAGCATGGCCTCAACCTTCGTGGCCCCCCGCACGC
TTCGGGACGTGCCTCACGCAGAGTCCTACCCCCCGGGCCATTCAGCCTTG
GTCATCCCAGCCACTCCGGAGACGCCATCCTACGAGGTGTCGTACACGGC
CCTCGCCCACGCGGTGGCCACGGTGGGGAAGCAGTTGATCCCTTTGCTCC
CCGCGGAGAAGTCGGAGAAGGTGGTGGCGCTAGCCATGCCGAAcaccctc
gctttccccttAGGCTTTTTGGGCGCTATTTACGGGGGAGCGGCCATGGC
CCCCCTCAATCCCGACtacaaggaagaggaatttCGGTTTTACCTGGagG
CCTgaATGCACGAATGTTTTTTGTGGTTGtGCGCACAGACGACACACCAA
CGACACAGGACGTACACGAAAAGCATGGCCTCAACCTTCGTGGCCCCCCG
CACGCTTCGGGACGTGCCTCACGCAGAGTCCTACCCCCCGGGCCATTCAG
CCTTGGTCATCCCAGCCACTCCGGAGACGCCATCCTACGAGGTGTCGTAC
ACGGCCCTCGCCCACGCGGTGGCCACGGTGGGGAAGCAGTTGATCCCTTT
GCTCCCCGCGGAGAAGTCGGAGAAGGTGGTGGCGCTAGCCATGCCGAAca
ccctcgctttccccttAGGCTTTTTGGGCGCTATTTACGGGGGAGCGGCC
ATGGCCCCCCTCAATCCCGACtacaaggaagaggaatttCGGTTTTACCT
GGagGCCTgaATGCACGAATGTTTTTTGTGGTTGtGCGCACAGACGACAC
ACCAACGACACAGGACGTACACGAAAAGCATGGCCTCAACCTTCGTGGCC
CCCCGCACGCTTCGGGACGTGCCTCACGCAGAGTCCTACCCCCCGGGCCA
TTCAGCCTTGGTCATCCCAGCCACTCCGGAGACGCCATCCTACGAGGTGT
CGTACACGGCCCTCGCCCACGCGGTGGCCACGGTGGGGAAGCAGTTGATC
CCTTTGCTCCCCGCGGAGAAGTCGGAGAAGGTGGTGGCGCTAGCCATGCC
GAAcaccctcgctttccccttAGGCTTTTTGGGCGCTATTTACGGGGGAG
CGGCCATGGCCCCCCTCAATCCCGACtacaaggaagaggaatttCGGTTT
TACCTGGagGCCTgaATGCACGAATGTTTTTTGTGGTTGtGCGCACAGAC
GACACACCAACGACACAGGACGTACACGAAAAGCATGGCCTCAACCTTCG
TGGCCCCCCGCACGCTTCGGGACGTGCCTCACGCAGAGTCCTACCCCCCG
GGCCATTCAGCCTTGGTCATCCCAGCCACTCCGGAGACGCCATCCTACGA
GGTGTCGTACACGGCCCTCGCCCACGCGGTGGCCACGGTGGGGAAGCAGT
TGATCCCTTTGCTCCCCGCGGAGAAGTCGGAGAAGGTGGTGGCGCTAGCC
ATGCCGAAcaccctcgctttccccttAGGCTTTTTGGGCGCTATTTACGG
GGGAGCGGCCATGGCCCCCCTCAATCCCGACtacaaggaagaggaatttC
GGTTTTACCTGGagGCCTga
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Synonyms
Publications