EWM21536.1, cds9138 (CDS) Nannochloropsis gaditana

Overview
NameEWM21536.1
Unique Namecds9138
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:476952..476975 +
Alignment locationKK037251.1:477480..477725 +
Alignment locationKK037251.1:477838..477966 +
Alignment locationKK037251.1:478065..478070 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21536.1
Productpcs60p
Orig transcript idgnl|cribi|Naga_101422g2.5166.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:476952..476975 +
KK037251.1supercontigKK037251.1:477480..477725 +
KK037251.1supercontigKK037251.1:477838..477966 +
KK037251.1supercontigKK037251.1:478065..478070 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR000873AMP-dep_Synth/Lig
Homology
BLAST of EWM21536.1 vs. NCBI_GenBank
Match: gi|585101775|gb|EWM21536.1| (pcs60p [Nannochloropsis gaditana])

HSP 1 Score: 275.789 bits (704), Expect = 6.820e-94
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
Query:    1 MHECFLWLCAQTTHQRHRTYTKSMASTFVAPRTLRDVPHAESYPPGHSALVIPATPETPSYEVSYTALAHAVATVGKQLIPLLPAEKSEKVVALAMPNTLAFPLGFLGAIYGGAAMAPLNPDYKEEEFRFYLEA 134
            MHECFLWLCAQTTHQRHRTYTKSMASTFVAPRTLRDVPHAESYPPGHSALVIPATPETPSYEVSYTALAHAVATVGKQLIPLLPAEKSEKVVALAMPNTLAFPLGFLGAIYGGAAMAPLNPDYKEEEFRFYLEA
Sbjct:    1 MHECFLWLCAQTTHQRHRTYTKSMASTFVAPRTLRDVPHAESYPPGHSALVIPATPETPSYEVSYTALAHAVATVGKQLIPLLPAEKSEKVVALAMPNTLAFPLGFLGAIYGGAAMAPLNPDYKEEEFRFYLEA 134          
BLAST of EWM21536.1 vs. NCBI_GenBank
Match: gi|636590473|ref|XP_008026575.1| (hypothetical protein SETTUDRAFT_184936 [Setosphaeria turcica Et28A] >gi|482808919|gb|EOA85780.1| hypothetical protein SETTUDRAFT_184936 [Setosphaeria turcica Et28A])

HSP 1 Score: 60.8474 bits (146), Expect = 2.868e-8
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 0
Query:   29 VAPRTLRDVPHAESYPPGHSALVIPATPETPSYEVSYTALAHAVATVGKQLIPLLPAEKSEKVVALAMPNTLAFPLGFLGAIYGGAAMAPLNPDYKEEEFRFYLE 133
            ++P TL    HA S     +A+++P +P   +  VSY  LA  V    +QL  +     +E  V++A+PNT  F + F+ A +  A  APLNP YK+ EF FY++
Sbjct:    1 MSPTTLE---HAFSKDSSSTAVIVPGSP---ALTVSYKKLAADVKAFQQQLAKV--GVSAEAAVSIALPNTYEFIVSFIAASWQRAIAAPLNPAYKQSEFEFYID 97          
BLAST of EWM21536.1 vs. NCBI_GenBank
Match: gi|1026272938|gb|OAD05945.1| (hypothetical protein MUCCIDRAFT_155197 [Mucor circinelloides f. lusitanicus CBS 277.49])

HSP 1 Score: 60.4622 bits (145), Expect = 5.144e-8
Identity = 29/89 (32.58%), Postives = 52/89 (58.43%), Query Frame = 0
Query:   47 HSALVIPATPETPSYEVSYTALAHAVATVGKQLIPLLPAEK--SEKVVALAMPNTLAFPLGFLGAIYGGAAMAPLNPDYKEEEFRFYLE 133
            H A++IP + + PS +++Y  +   +    ++L   +PA+     + ++++ PN+  F + FLGA +     +PLNP Y E+EF FYLE
Sbjct:   17 HPAIIIPQSADVPS-KITYNQMLDIIYDFSRKLAAQVPAKALAPGRSISISYPNSFEFSVAFLGATFMNLVASPLNPAYTEDEFNFYLE 104          
BLAST of EWM21536.1 vs. NCBI_GenBank
Match: gi|928512285|ref|XP_014074945.1| (hypothetical protein COCC4DRAFT_53356 [Bipolaris maydis ATCC 48331] >gi|452003983|gb|EMD96439.1| hypothetical protein COCHEDRAFT_1162079 [Bipolaris maydis C5] >gi|477583941|gb|ENI01036.1| hypothetical protein COCC4DRAFT_53356 [Bipolaris maydis ATCC 48331])

HSP 1 Score: 60.077 bits (144), Expect = 6.908e-8
Identity = 38/105 (36.19%), Postives = 57/105 (54.29%), Query Frame = 0
Query:   29 VAPRTLRDVPHAESYPPGHSALVIPATPETPSYEVSYTALAHAVATVGKQLIPLLPAEKSEKVVALAMPNTLAFPLGFLGAIYGGAAMAPLNPDYKEEEFRFYLE 133
            ++P TL     A S     +A+++P TP   +  VSY  LA  V    +QL  +     +E  V++A+PNT  F + F+ A +  A  APLNP YK+ EF FY++
Sbjct:    1 MSPTTLE---QAFSKDSSSTAIIVPGTP---ALTVSYKKLAADVKAFQQQLAKV--GVSAEAAVSIALPNTYEFIVSFIAASWQRAIAAPLNPAYKQSEFEFYID 97          
BLAST of EWM21536.1 vs. NCBI_GenBank
Match: gi|189196774|ref|XP_001934725.1| (2-succinylbenzoate-CoA ligase [Pyrenophora tritici-repentis Pt-1C-BFP] >gi|187980604|gb|EDU47230.1| 2-succinylbenzoate-CoA ligase [Pyrenophora tritici-repentis Pt-1C-BFP])

HSP 1 Score: 60.077 bits (144), Expect = 6.980e-8
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 0
Query:   29 VAPRTLRDVPHAESYPPGHSALVIPATPETPSYEVSYTALAHAVATVGKQLIPLLPAEKSEKVVALAMPNTLAFPLGFLGAIYGGAAMAPLNPDYKEEEFRFYLE 133
            ++P TL    HA S     +A+++P +P   +  VSY  LA  V +  ++L  +     +E  V++A+PNT  F + F+ A +  A  APLNP YK+ EF FY++
Sbjct:    1 MSPTTLE---HAFSKDSSSTAIIVPGSP---ALTVSYKKLAVDVKSFQQKLAKV--GVSAEAAVSIALPNTYEFIVSFIAASWQRAIAAPLNPAYKQSEFEFYID 97          
BLAST of EWM21536.1 vs. NCBI_GenBank
Match: gi|511008265|gb|EPB89534.1| (hypothetical protein HMPREF1544_03618 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 59.6918 bits (143), Expect = 7.500e-8
Identity = 29/89 (32.58%), Postives = 51/89 (57.30%), Query Frame = 0
Query:   47 HSALVIPATPETPSYEVSYTALAHAVATVGKQLIPLLPAEK--SEKVVALAMPNTLAFPLGFLGAIYGGAAMAPLNPDYKEEEFRFYLE 133
            H A++IP + + PS +++Y  +   +    ++L   +PA      + ++++ PN+  F + FLGA +     +PLNP Y E+EF FYLE
Sbjct:   17 HPAIIIPQSADVPS-KITYNQMLDIIYDFSRKLAAQVPASALAPGRSISISYPNSFEFSVAFLGATFMNLVASPLNPAYTEDEFNFYLE 104          
BLAST of EWM21536.1 vs. NCBI_GenBank
Match: gi|758352063|dbj|GAN05822.1| (peroxisomal-coenzyme A synthetase [Mucor ambiguus])

HSP 1 Score: 59.6918 bits (143), Expect = 8.261e-8
Identity = 29/89 (32.58%), Postives = 51/89 (57.30%), Query Frame = 0
Query:   47 HSALVIPATPETPSYEVSYTALAHAVATVGKQLIPLLPAEK--SEKVVALAMPNTLAFPLGFLGAIYGGAAMAPLNPDYKEEEFRFYLE 133
            H A++IP + + PS +++Y  +   +    ++L   +PA      + ++++ PN+  F + FLGA +     +PLNP Y E+EF FYLE
Sbjct:   17 HPAIIIPQSADVPS-KITYNQMLDIIYDFSRKLAAQVPASALAPGRSISISYPNSFEFSVAFLGATFMNLVASPLNPAYTEDEFNFYLE 104          
BLAST of EWM21536.1 vs. NCBI_GenBank
Match: gi|396461959|ref|XP_003835591.1| (hypothetical protein LEMA_P049320.1 [Leptosphaeria maculans JN3] >gi|312212142|emb|CBX92226.1| hypothetical protein LEMA_P049320.1 [Leptosphaeria maculans JN3])

HSP 1 Score: 56.6102 bits (135), Expect = 1.170e-7
Identity = 34/105 (32.38%), Postives = 57/105 (54.29%), Query Frame = 0
Query:   29 VAPRTLRDVPHAESYPPGHSALVIPATPETPSYEVSYTALAHAVATVGKQLIPLLPAEKSEKVVALAMPNTLAFPLGFLGAIYGGAAMAPLNPDYKEEEFRFYLE 133
            ++P TL++    +S     +A+++P  P      VSY  L+  V    ++L  +     +E  V++A+PNT  F + F+ A +  A  APLNP YK+ EF FY++
Sbjct:    1 MSPTTLQNAFSKDS---TTTAIIVPGNPP---LSVSYQKLSADVKAFQEKLAQV--GVSAEAAVSIALPNTYEFIVSFIAASWQRAIAAPLNPAYKQSEFEFYID 97          
BLAST of EWM21536.1 vs. NCBI_GenBank
Match: gi|557725757|dbj|GAD95547.1| (peroxisomal-coenzyme A synthetase [Byssochlamys spectabilis No. 5])

HSP 1 Score: 59.3066 bits (142), Expect = 1.246e-7
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 0
Query:   48 SALVIPATPETPSYEVSYTALAHAVATVGKQLIPLLPAEKSEKVVALAMPNTLAFPLGFLGAIYGGAAMAPLNPDYKEEEFRFYLE 133
            +A+++P+ P+  +  VSY  L  AVAT   +L  L    +    V++A+PN+  F + FL A +     APLNP YK+EEF FY++
Sbjct:   15 TAIIVPSKPQ--ALTVSYKQLNSAVATFQAKLAKL--GIRPGDAVSIALPNSYEFIVSFLAASWQRGIAAPLNPAYKQEEFEFYID 96          
BLAST of EWM21536.1 vs. NCBI_GenBank
Match: gi|909994932|gb|KNG52358.1| (acetyl-CoA synthetase-like protein [Stemphylium lycopersici])

HSP 1 Score: 59.3066 bits (142), Expect = 1.259e-7
Identity = 37/105 (35.24%), Postives = 57/105 (54.29%), Query Frame = 0
Query:   29 VAPRTLRDVPHAESYPPGHSALVIPATPETPSYEVSYTALAHAVATVGKQLIPLLPAEKSEKVVALAMPNTLAFPLGFLGAIYGGAAMAPLNPDYKEEEFRFYLE 133
            ++P TL    HA +     +A+++P  P   +  VSY  LA  V    +QL  +     +E  V++A+PNT  F + F+ A +  A  APLNP YK+ EF FY++
Sbjct:    1 MSPTTLE---HAFAKDSSSTAIIVPGNP---ALTVSYKKLAVDVKAFQQQLAKV--GVSAEAAVSIALPNTYEFIVSFIAASWQRAIAAPLNPAYKQSEFEFYID 97          
The following BLAST results are available for this feature:
BLAST of EWM21536.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101775|gb|EWM21536.1|6.820e-94100.00pcs60p [Nannochloropsis gaditana][more]
gi|636590473|ref|XP_008026575.1|2.868e-836.19hypothetical protein SETTUDRAFT_184936 [Setosphaer... [more]
gi|1026272938|gb|OAD05945.1|5.144e-832.58hypothetical protein MUCCIDRAFT_155197 [Mucor circ... [more]
gi|928512285|ref|XP_014074945.1|6.908e-836.19hypothetical protein COCC4DRAFT_53356 [Bipolaris m... [more]
gi|189196774|ref|XP_001934725.1|6.980e-835.242-succinylbenzoate-CoA ligase [Pyrenophora tritici... [more]
gi|511008265|gb|EPB89534.1|7.500e-832.58hypothetical protein HMPREF1544_03618 [Mucor circi... [more]
gi|758352063|dbj|GAN05822.1|8.261e-832.58peroxisomal-coenzyme A synthetase [Mucor ambiguus][more]
gi|396461959|ref|XP_003835591.1|1.170e-732.38hypothetical protein LEMA_P049320.1 [Leptosphaeria... [more]
gi|557725757|dbj|GAD95547.1|1.246e-738.37peroxisomal-coenzyme A synthetase [Byssochlamys sp... [more]
gi|909994932|gb|KNG52358.1|1.259e-735.24acetyl-CoA synthetase-like protein [Stemphylium ly... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9168rna9168Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications