rna9142, rna9142 (mRNA) Nannochloropsis gaditana

Overview
Namerna9142
Unique Namerna9142
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1479
Alignment locationKK037251.1:430218..431324 -

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Properties
Property NameValue
ProductFibronectin-binding A protein
Orig transcript idgnl|cribi|Naga_100559g1.1315.mrna
Orig protein idgnl|cribi|Naga_100559g1.1315
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:430218..431324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100559g1gene8865Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9142rna9142-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21560.1cds9112Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9142 ID=rna9142|Name=rna9142|organism=Nannochloropsis gaditana|type=mRNA|length=1479bp
ATGGAGAAGGCCGTGAAGGCGGCGGAGCGCCAGGCGGCCGCCTCTCTGAG
CAAGCAGCAGAGGAAGCGGACCCTCTCGGTCGTCCGCAAGCCCTACTGGT
TCGAGAAGTTCCACTGGTTCATCACCTCCGACAACCACCTGGTGGTCAGC
GGGCGGGATGCGCAACAGAACGAGCTCCTGGTCAAGCGCTACCTGCGCGT
GGGCGACGCTTACGTGCATGCCGACCTCCCCGGGGCCGCCTCCTGCGTGG
TCCGGCACAAGGGCGCCTTGGGCGGGGTGGGGGCAGAGGTCTCCCCCGTA
GCGCTGCAGGAGGCGGGCTGTCTGGCCGTCAGCCGGTCCTCGGCATGGAA
GGCGAAGATGGTCACGTCGGCCTGGTGGGTGGGGGCGGGGCAGGTGAGCA
AGACGGCGCCCGCGGGGGAGTTTCTCCCCACCGGGTCCTTCATGGTCCGG
GGGAAGAAGAACTTCCTGGCGCCGCAGCCGCTGGAGATGGGCCTGGGCCT
GCTCTTCAAGCTGGACGAAGGGAGCGTGGGGCGGCACACGAAGGAGCGGC
GAGAGCGAGGGGAGGTTGGGGGGGAGGAGGAGGGAGGGGAGGGGGAGGTG
GAGCGTCGGCGGCAGGAGTGGCTGGAGAAGGAGCTGGTGCGGCGCCGGGA
GGATTTGGGCGCGATGGAGCTAAGGGCTCTGGCTGCTCTTCCGACAGATT
CCCAGCAATGGGCAGTCATGCGGGCCTTCGAGGCGGCCGTGGGGGCCGGG
GCCCCGGGGCGGAGGGTCCGGAGCAAAAGCGCGTTACTGGCGCAGGAGAT
TCAACGGCAGGTGGTCCTCGGGAGTCAGGCCCCCGCTCTTGCCTCTAAGG
GGAGGAGGGAGGGCTGTGGCGAAGAGGTTGGGAAGGAGGATCAAGAAGGG
ACTGAAGAGGATGCGACGCCAGCCGTGAGCCGACGGGCGGCGGCCCGGGA
GGAGGAGGAAGGGCTTCTGGCGCTGCTGGAGGAGGAAGGGGTGGCGGGCG
GGGGGGGCGAGGAGGAGGCAGAGGTGGAGGAGGAGCAGCGGGAGCTGCGG
CGACTGACGGGCAGGCCGGTCTCGGAGGACCTCTTGCTCTTCGCCATGCC
CGTGTGCGCGCCCTACTCGGCCCTGGCCCCCGCCTACTACAAGTACCGCG
TCAAGCTGACGCCCGGCGCGCAGAAGAAGGGGAAGGCGGCGCACCAGGCC
CTGGAGGTCTTCGTGCGGGACAGGGAGGCGACGCCGCGGGAGGTGGAGCT
GATCAAGGGCATCGCCGACAACGAGCTCGTCGCCGCCTGCATGGGCGACG
TCCAAGTCTCCAAGCCCGGCATTCAGGCGGCGCTGCTCAAGGCGAAGCGC
AGCAAGGCCACGGCCAAGGTCAAGGCCTCCCGGGGGCGCTGAGGGAATGG
GGGCAGGAAAAGAGGAGGGAAAGAGGGGACACAGGGGGAAGGCCTACGAA
TTAAAACCTGGAAAATGAAATCAGTCTTA
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protein sequence of rna9142

>rna9142-protein ID=rna9142-protein|Name=rna9142|organism=Nannochloropsis gaditana|type=polypeptide|length=185bp
MVKTKFTTPDVRAMVRDLRTKVLGLKVVNIYDIDNRTYTFKLAVPGGEKV
TLLLESGARFHTTAYARERSVPGELPNVFAMKLRKYLRGKGLEDVRQLGM
DRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQYDQGPE
KAVDGEVVGKDAEAGAARGSRRMRAPSRTPPRGWQ
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mRNA from alignment at KK037251.1:430218..431324-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9142 ID=rna9142|Name=rna9142|organism=Nannochloropsis gaditana|type=mRNA|length=1107bp|location=Sequence derived from alignment at KK037251.1:430218..431324- (Nannochloropsis gaditana)
ATGGTGAAAACCAAGTTTACGACTCCCGATGTCCGCGCCATGGTGAGTAT
GGGATGGCAAAGTCTATATTTATTTTTGAAAATCGCGTCCAACAAGGCGA
AATATCACATTGCCACCCATTTCTACCCGTCGGAGGAATTTAGGTGAGGG
ATTTACGGACAAAGGTGCTGGGATTGAAGGTGGTAAATATCTATGACATA
GACAACCGGACATACACGTTTAAGCTGGCTGTACCGGGTGGAGAAAAAGT
CACTTTGCTGTTGGAGTCGGGCGCCCGCTTCCATACAACGGCCTATGCAC
GTGAGCGCAGTGTCCCAGGCGAATTGCCGAACGTCTTCGCAATGAAGCTG
CGGAAATACTTGCGTGGCAAAGGCTTGGAGGACGTCCGGCAGCTGGGAAT
GGACCGCGTTGTCGTCTTTCGGTTCGGACAGGGCGAGGGTGCGCTGCATT
TGATCCTGGAGCTCTACGCTAGCGGCAACCTCGTGTTGACAGACGCCAAT
TATCTCATTTTGGCGCTCCTGCGCACCCACCAGTATGACCAAGGCCCCGA
GAAGGCCGTGGACGGGGAAGTTGTCGGAAAGGACGCGGAAGCCGGGGCCG
GTACGGTGGAAGGCCGCGTGGAGGAGAGTGGGAGGGTGGTGCGGGTGGGA
CATGTCTACCCGCTGGCATTCGCCAGTAACGCCCTTGCCGCCACTCGCTC
CAGCGCGGGGGTCGAGAAGGATGCGGGCGCCAAGCAGGACCCCCCCCCGT
GGCTGGCAGTGACGGCGGAGACCGTGCTGGCGGCGTTGCGGGAAGTGGTG
GTGCGGGAGAAGGGGAAGGCGGGGAAGGAGGGAAACGGGACGTCGTCCAT
GGCCCAGGGGGGCAAAAGGGGGAGGACGAAGCGGGGCGGGCAAGCAGGCG
CCAGTGCTCGGAGCAAAGTGAACCTGAAGATGGCGCTCATGACCAGCAAA
ACGCTCGACTTGAGCGCCCTCGGGCCCGCCATCGTCGAGCACGCCGTCCT
GGAGGCCGGGCTTCGACCTCTGCTCAGGCTGATGCCCCCTGCCTCGGCTG
TGGCGCCGGGAGAGGACGAGGAGGAGGGGGAGGGGCAAAGGGAGGGTCTG
ACGGAGG
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Coding sequence (CDS) from alignment at KK037251.1:430218..431324-

>rna9142 ID=rna9142|Name=rna9142|organism=Nannochloropsis gaditana|type=CDS|length=1674bp|location=Sequence derived from alignment at KK037251.1:430218..431324- (Nannochloropsis gaditana)
CGCGGGGGTCGAGAAGGATGCGGGCGCCAAGCAGGACCCCCCCCCGTGGC
TGGCAGTGAGTGAGGGATTTACGGACAAAGGTGCTGGGATTGAAGGTGGT
AAATATCTATGACATAGACAACCGGACATACACGTTTAAGCTGGCTGTAC
CGGGTGGAGAAAAAGTCACTTTGCTGTTGGAGTCGGGCGCCCGCTTCCAT
ACAACGGCCTATGCACGTGAGCGCAGTGTCCCAGGCGAATTGCCGAACGT
CTTCGCAATGAAGCTGCGGAAATACTTGCGTGGCAAAGGCTTGGAGGACG
TCCGGCAGCTGGGAATGGACCGCGTTGTCGTCTTTCGGTTCGGACAGGGC
GAGGGTGCGCTGCATTTGATCCTGGAGCTCTACGCTAGCGGCAACCTCGT
GTTGACAGACGCCAATTATCTCATTTTGGCGCTCCTGCGCACCCACCAGT
ATGACCAAGGCCCCGAGAAGGCCGTGGACGGGGAAGTTGTCGGAAAGGAC
GCGGAAGCCGGGGCCGATGGTGAAAACCAAGTTTACGACTCCCGATGTCC
GCGCCATGCGCGGGGGTCGAGAAGGATGCGGGCGCCAAGCAGGACCCCCC
CCCGTGGCTGGCAGTGAGTGAGGGATTTACGGACAAAGGTGCTGGGATTG
AAGGTGGTAAATATCTATGACATAGACAACCGGACATACACGTTTAAGCT
GGCTGTACCGGGTGGAGAAAAAGTCACTTTGCTGTTGGAGTCGGGCGCCC
GCTTCCATACAACGGCCTATGCACGTGAGCGCAGTGTCCCAGGCGAATTG
CCGAACGTCTTCGCAATGAAGCTGCGGAAATACTTGCGTGGCAAAGGCTT
GGAGGACGTCCGGCAGCTGGGAATGGACCGCGTTGTCGTCTTTCGGTTCG
GACAGGGCGAGGGTGCGCTGCATTTGATCCTGGAGCTCTACGCTAGCGGC
AACCTCGTGTTGACAGACGCCAATTATCTCATTTTGGCGCTCCTGCGCAC
CCACCAGTATGACCAAGGCCCCGAGAAGGCCGTGGACGGGGAAGTTGTCG
GAAAGGACGCGGAAGCCGGGGCCGATGGTGAAAACCAAGTTTACGACTCC
CGATGTCCGCGCCATGCGCGGGGGTCGAGAAGGATGCGGGCGCCAAGCAG
GACCCCCCCCCGTGGCTGGCAGTGAGTGAGGGATTTACGGACAAAGGTGC
TGGGATTGAAGGTGGTAAATATCTATGACATAGACAACCGGACATACACG
TTTAAGCTGGCTGTACCGGGTGGAGAAAAAGTCACTTTGCTGTTGGAGTC
GGGCGCCCGCTTCCATACAACGGCCTATGCACGTGAGCGCAGTGTCCCAG
GCGAATTGCCGAACGTCTTCGCAATGAAGCTGCGGAAATACTTGCGTGGC
AAAGGCTTGGAGGACGTCCGGCAGCTGGGAATGGACCGCGTTGTCGTCTT
TCGGTTCGGACAGGGCGAGGGTGCGCTGCATTTGATCCTGGAGCTCTACG
CTAGCGGCAACCTCGTGTTGACAGACGCCAATTATCTCATTTTGGCGCTC
CTGCGCACCCACCAGTATGACCAAGGCCCCGAGAAGGCCGTGGACGGGGA
AGTTGTCGGAAAGGACGCGGAAGCCGGGGCCGATGGTGAAAACCAAGTTT
ACGACTCCCGATGTCCGCGCCATG
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Synonyms
Publications