EWM21560.1, cds9112 (CDS) Nannochloropsis gaditana

Overview
NameEWM21560.1
Unique Namecds9112
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:431283..431324 -
Alignment locationKK037251.1:430725..431181 -
Alignment locationKK037251.1:430563..430621 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21560.1
ProductFibronectin-binding A protein
Orig transcript idgnl|cribi|Naga_100559g1.1315.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:431283..431324 -
KK037251.1supercontigKK037251.1:430725..431181 -
KK037251.1supercontigKK037251.1:430563..430621 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
BLAST of EWM21560.1 vs. NCBI_GenBank
Match: gi|585101814|gb|EWM21560.1| (Fibronectin-binding A protein [Nannochloropsis gaditana])

HSP 1 Score: 375.17 bits (962), Expect = 1.329e-131
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0
Query:    1 MVKTKFTTPDVRAMVRDLRTKVLGLKVVNIYDIDNRTYTFKLAVPGGEKVTLLLESGARFHTTAYARERSVPGELPNVFAMKLRKYLRGKGLEDVRQLGMDRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQYDQGPEKAVDGEVVGKDAEAGAARGSRRMRAPSRTPPRGWQ 185
            MVKTKFTTPDVRAMVRDLRTKVLGLKVVNIYDIDNRTYTFKLAVPGGEKVTLLLESGARFHTTAYARERSVPGELPNVFAMKLRKYLRGKGLEDVRQLGMDRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQYDQGPEKAVDGEVVGKDAEAGAARGSRRMRAPSRTPPRGWQ
Sbjct:    1 MVKTKFTTPDVRAMVRDLRTKVLGLKVVNIYDIDNRTYTFKLAVPGGEKVTLLLESGARFHTTAYARERSVPGELPNVFAMKLRKYLRGKGLEDVRQLGMDRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQYDQGPEKAVDGEVVGKDAEAGAARGSRRMRAPSRTPPRGWQ 185          
BLAST of EWM21560.1 vs. NCBI_GenBank
Match: gi|553178766|ref|XP_005852602.1| (zinc knuckle (cchc-type) family protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295934|gb|EKU23233.1| zinc knuckle (cchc-type) family protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 335.88 bits (860), Expect = 6.889e-113
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query:    1 MVKTKFTTPDVRAMVRDLRTKVLGLKVVNIYDIDNRTYTFKLAVPGGEKVTLLLESGARFHTTAYARERSVPGELPNVFAMKLRKYLRGKGLEDVRQLGMDRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQYDQGPEKAVDGEVVGKDAEAGA 166
            MVKTKFTTPDVRAMVRDLRTKVLGLKVVNIYDIDNRTYTFKLAVPGGEKVTLLLESGARFHTTAYARERSVPGELPNVFAMKLRKYLRGKGLEDVRQLGMDRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQYDQGPEKAVDGEVVGKDAEAGA
Sbjct:    1 MVKTKFTTPDVRAMVRDLRTKVLGLKVVNIYDIDNRTYTFKLAVPGGEKVTLLLESGARFHTTAYARERSVPGELPNVFAMKLRKYLRGKGLEDVRQLGMDRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQYDQGPEKAVDGEVVGKDAEAGA 166          
BLAST of EWM21560.1 vs. NCBI_GenBank
Match: gi|669156252|ref|XP_008613688.1| (hypothetical protein SDRG_09524 [Saprolegnia diclina VS20] >gi|530734760|gb|EQC33002.1| hypothetical protein SDRG_09524 [Saprolegnia diclina VS20])

HSP 1 Score: 164.081 bits (414), Expect = 1.717e-43
Identity = 91/177 (51.41%), Postives = 113/177 (63.84%), Query Frame = 0
Query:    2 VKTKFTTPDVRAMVRDLRTKVLGLKVVNIYDID-NRTYTFKLAVPGGEKVTLLLESGARFHTTAYARERSVPGELPNVFAMKLRKYLRGKGLEDVRQLGMDRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQYDQGPEKAV-------DGEVVGKDAEAGAARGS 170
            +KT+    D+ AMV  +   V+ ++V NIYD + N+TY  KLA PG  KV LLL+SG RFHTTAYARE +    LP  F MKLRK+LRGK L  V Q   DRV+ F FG G+   HLILELYA+GN++LTD NY IL+LLR+H YD+  + AV       +  VVG  A A    GS
Sbjct:    1 MKTRMAIDDISAMVGSITKNVVNMRVTNIYDSEVNKTYILKLATPGLPKVFLLLQSGVRFHTTAYARETA--SALPLQFTMKLRKHLRGKRLASVTQCASDRVIDFAFGDGDQRHHLILELYAAGNIILTDHNYSILSLLRSHTYDEQVKVAVKQIYPMENAMVVGNSAAAVFTSGS 175          
BLAST of EWM21560.1 vs. NCBI_GenBank
Match: gi|813157119|ref|XP_012201908.1| (hypothetical protein SPRG_07059 [Saprolegnia parasitica CBS 223.65] >gi|641533481|gb|KDO27470.1| hypothetical protein SPRG_07059 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 162.925 bits (411), Expect = 4.276e-43
Identity = 91/177 (51.41%), Postives = 113/177 (63.84%), Query Frame = 0
Query:    2 VKTKFTTPDVRAMVRDLRTKVLGLKVVNIYDID-NRTYTFKLAVPGGEKVTLLLESGARFHTTAYARERSVPGELPNVFAMKLRKYLRGKGLEDVRQLGMDRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQYDQGPEKAV-------DGEVVGKDAEAGAARGS 170
            +KT+    D+ AMV  +   V+ ++V NIYD + N+TY  KLA PG  KV LLL+SG RFHTTAYARE +    LP  F MKLRK+LRGK L  V Q   DRV+ F FG G+   HLILELYA+GN++LTD NY IL+LLR+H YD+  + AV       +  VVG  A A    GS
Sbjct:    1 MKTRMAIDDISAMVGSITKNVVNMRVTNIYDSEVNKTYILKLATPGLPKVFLLLQSGVRFHTTAYARETA--SALPLQFTMKLRKHLRGKRLASVTQCASDRVIDFAFGDGDQRHHLILELYAAGNIILTDHNYSILSLLRSHTYDEQVKVAVKQVYPMENAMVVGNSAAAVFRSGS 175          
BLAST of EWM21560.1 vs. NCBI_GenBank
Match: gi|1173927092|gb|OQR81173.1| (hypothetical protein ACHHYP_16685 [Achlya hypogyna])

HSP 1 Score: 162.925 bits (411), Expect = 5.101e-43
Identity = 90/177 (50.85%), Postives = 113/177 (63.84%), Query Frame = 0
Query:    2 VKTKFTTPDVRAMVRDLRTKVLGLKVVNIYDID-NRTYTFKLAVPGGEKVTLLLESGARFHTTAYARERSVPGELPNVFAMKLRKYLRGKGLEDVRQLGMDRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQYDQGPEKAV-------DGEVVGKDAEAGAARGS 170
            +KT+    D+ AMV  ++  V+ ++V NIYD + ++TY  KLA PG  KV LLL+SG RFHTTAYARE +    LP  F MKLRK+LRGK L  V Q   DRV+ F FG G+   HLILELYA+GN++LTD NY IL+LLR+H YD   + AV       +  VVG  A A    GS
Sbjct:    1 MKTRMAIDDISAMVGSIQKNVVNMRVTNIYDSEVSKTYILKLATPGLPKVFLLLQSGVRFHTTAYARETA--SALPLQFTMKLRKHLRGKRLAAVTQCASDRVIDFTFGDGDQRHHLILELYAAGNIILTDQNYSILSLLRSHTYDDQVKVAVKQVYPMENAMVVGNSAAAAFTSGS 175          
BLAST of EWM21560.1 vs. NCBI_GenBank
Match: gi|698797262|ref|XP_009831660.1| (hypothetical protein H257_07731 [Aphanomyces astaci] >gi|574113451|gb|ETV78941.1| hypothetical protein H257_07731 [Aphanomyces astaci])

HSP 1 Score: 161.77 bits (408), Expect = 1.132e-42
Identity = 85/153 (55.56%), Postives = 105/153 (68.63%), Query Frame = 0
Query:    2 VKTKFTTPDVRAMVRDLRTKVLGLKVVNIYDID-NRTYTFKLAVPGGEKVTLLLESGARFHTTAYARERSVPGELPNVFAMKLRKYLRGKGLEDVRQLGMDRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQYDQGPEKAV 153
            +KT+    D+ AMV  ++  V+ ++V NIYD + N+TY  KLA PG  KV LLL+SG RFHTTAYARE +    LP  F MKLRK+LRGK L  V Q G DRV+ F FG G+   HLILELYA+GN++LTD  Y IL+LLRTH YD   + AV
Sbjct:    1 MKTRMAIDDISAMVGSIQKNVVNMRVTNIYDAEVNKTYILKLATPGLPKVFLLLQSGIRFHTTAYARETA--SALPLQFTMKLRKHLRGKRLASVTQCGSDRVIDFCFGDGDQRHHLILELYAAGNIILTDHAYTILSLLRTHAYDDQVKVAV 151          
BLAST of EWM21560.1 vs. NCBI_GenBank
Match: gi|1201317587|gb|OVA16716.1| (Fibronectin-binding A [Macleaya cordata])

HSP 1 Score: 148.673 bits (374), Expect = 1.379e-42
Identity = 74/151 (49.01%), Postives = 106/151 (70.20%), Query Frame = 0
Query:    1 MVKTKFTTPDVRAMVRDLRTKVLGLKVVNIYDIDNRTYTFKLAVPGG-------EKVTLLLESGARFHTTAYARERSVPGELPNVFAMKLRKYLRGKGLEDVRQLGMDRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQ 144
            MVK +  T DV A V+ LR +++G++  N+YD+  +TY FKL    G       EKV LL+ESG R HTTAY R++S     P+ F +KLRK++R + LEDVRQLG DR+++F+FG G  A ++ILELYA GN++LTD+ +L++ LLR+H+
Sbjct:    1 MVKVRMNTADVAAEVKCLR-RLIGMRCSNVYDLSPKTYMFKLMNSSGVTESGESEKVLLLMESGVRLHTTAYVRDKSTT---PSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGSNAHYIILELYAQGNILLTDSEFLVMTLLRSHR 147          
BLAST of EWM21560.1 vs. NCBI_GenBank
Match: gi|545364827|ref|XP_005647447.1| (hypothetical protein COCSUDRAFT_16391 [Coccomyxa subellipsoidea C-169] >gi|384249421|gb|EIE22903.1| hypothetical protein COCSUDRAFT_16391 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 160.999 bits (406), Expect = 2.082e-42
Identity = 81/148 (54.73%), Postives = 105/148 (70.95%), Query Frame = 0
Query:    1 MVKTKFTTPDVRAMVRDLRTKVLGLKVVNIYDIDNRTYTFKLAVPG--GEKVTLLLESGARFHTTAYARERSVPGELPNVFAMKLRKYLRGKGLEDVRQLGMDRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQYD 146
            MVK + +T DV   V  LR  VLG++V N+YD + +TY  KL+  G  GEK  L+LESG RFHTT Y ++++   + P+ F +KLRK+LR + L+DVRQLG+DRVV F FG GE   HLILELYA GN++L DANY IL LLR+H+ D
Sbjct:    1 MVKQRMSTADVVGEVACLRHSVLGMRVANVYDANAKTYIIKLSKSGEEGEKALLVLESGVRFHTTRYLKDKA---DTPSNFTLKLRKHLRTRRLDDVRQLGVDRVVDFSFGTGEACYHLILELYAQGNVILADANYSILTLLRSHRDD 145          
BLAST of EWM21560.1 vs. NCBI_GenBank
Match: gi|970645580|gb|KUF86008.1| (Nuclear export mediator factor NEMF [Phytophthora nicotianae])

HSP 1 Score: 160.614 bits (405), Expect = 3.702e-42
Identity = 84/163 (51.53%), Postives = 106/163 (65.03%), Query Frame = 0
Query:    1 MVKTKFTTPDVRAMVRDLRTKVLGLKVVNIYDIDN-------RTYTFKLAVPGGEKVTLLLESGARFHTTAYARERSVPGELPNVFAMKLRKYLRGKGLEDVRQLGMDRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQYDQGPEKAVDGE 156
            M KT+ +  D+ AMV  +R  V+ ++V NIYD+         +TY  KL  P   KV LLLESG RFHT+ YAR+      LP+ F MKLRK+LRGK L  + QL  DRVV F FGQG    HLILELYASGN++LTD +Y IL+LLRTH++D+  + AV  E
Sbjct:    1 MKKTRMSIDDIHAMVGSIRANVVNMRVTNIYDVQGQGDGGAAKTYILKLHQPPFPKVFLLLESGVRFHTSKYARDAKAGNALPSQFTMKLRKHLRGKRLSALTQLEGDRVVDFTFGQGALKCHLILELYASGNIILTDGDYRILSLLRTHRFDENVKMAVKQE 163          
BLAST of EWM21560.1 vs. NCBI_GenBank
Match: gi|1173943658|gb|OQR92482.1| (hypothetical protein THRCLA_08690 [Thraustotheca clavata])

HSP 1 Score: 160.614 bits (405), Expect = 3.836e-42
Identity = 88/177 (49.72%), Postives = 115/177 (64.97%), Query Frame = 0
Query:    2 VKTKFTTPDVRAMVRDLRTKVLGLKVVNIYDID-NRTYTFKLAVPGGEKVTLLLESGARFHTTAYARERSVPGELPNVFAMKLRKYLRGKGLEDVRQLGMDRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQYDQGPEKAV-------DGEVVGKDAEAGAARGS 170
            +KT+    D+ AMV  ++  V+ ++V NIYD D ++TY  KLA PG  KV LLL+SG RFHTTAYARE +    LP  F MKLRK+LRGK L  V Q   DRV+ F FG G+ + HLILELYA+GN++LTD  Y IL+LLR+H YD+  + AV       +  VVG  A +   +G+
Sbjct:    1 MKTRMAIDDISAMVGSIQKNVVNMRVTNIYDSDVSKTYILKLATPGLPKVFLLLQSGIRFHTTAYARETA--SALPLQFTMKLRKHLRGKRLASVTQCASDRVIDFCFGDGDQSHHLILELYAAGNIILTDHTYSILSLLRSHTYDEQVKVAVKQIYPMGNAMVVGNTASSVFTKGT 175          
The following BLAST results are available for this feature:
BLAST of EWM21560.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101814|gb|EWM21560.1|1.329e-131100.00Fibronectin-binding A protein [Nannochloropsis gad... [more]
gi|553178766|ref|XP_005852602.1|6.889e-113100.00zinc knuckle (cchc-type) family protein, partial [... [more]
gi|669156252|ref|XP_008613688.1|1.717e-4351.41hypothetical protein SDRG_09524 [Saprolegnia dicli... [more]
gi|813157119|ref|XP_012201908.1|4.276e-4351.41hypothetical protein SPRG_07059 [Saprolegnia paras... [more]
gi|1173927092|gb|OQR81173.1|5.101e-4350.85hypothetical protein ACHHYP_16685 [Achlya hypogyna... [more]
gi|698797262|ref|XP_009831660.1|1.132e-4255.56hypothetical protein H257_07731 [Aphanomyces astac... [more]
gi|1201317587|gb|OVA16716.1|1.379e-4249.01Fibronectin-binding A [Macleaya cordata][more]
gi|545364827|ref|XP_005647447.1|2.082e-4254.73hypothetical protein COCSUDRAFT_16391 [Coccomyxa s... [more]
gi|970645580|gb|KUF86008.1|3.702e-4251.53Nuclear export mediator factor NEMF [Phytophthora ... [more]
gi|1173943658|gb|OQR92482.1|3.836e-4249.72hypothetical protein THRCLA_08690 [Thraustotheca c... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9142rna9142Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications