rna914, rna914 (mRNA) Nannochloropsis gaditana

Overview
Namerna914
Unique Namerna914
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length249
Alignment locationCM002456.1:716492..718260 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100022g27.851.mrna
Orig protein idgnl|cribi|Naga_100022g27.851
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:716492..718260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100022g27gene877Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29752.1cds914Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna914rna914-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna914 ID=rna914|Name=rna914|organism=Nannochloropsis gaditana|type=mRNA|length=249bp
ATGTGGAGCACAACGGACTACGCTCCACCCCGCGAAGGTGGTCGGCAGCG
GGTCCGGGGGTTTAAAGTGTCGAGTACAGGCAAAGACTCCAGTGCAGAGA
GATGGCAAAGTCGAGGATTTCTCGAGGAGGACGGAGCGAGCGGCATGGAC
TTGGCGGCTGGAGATGGTTATCTGGGCGGCGAGAAGCAAGTACACAAAGG
CTTCTACAATAACTTTGGAGACATCTTCAACCTGCGCGATCTCTCCTAG
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protein sequence of rna914

>rna914-protein ID=rna914-protein|Name=rna914|organism=Nannochloropsis gaditana|type=polypeptide|length=135bp
MPSRQQPKRIYNISEFPSHYRIKGGVDDSDRQLLGGIYSGVTSSFEYGLG
ESTYIAAWTRMPRWSGVDSDPDWIVGLRNKRLIPSHFQFHFGHVGMTGVW
GYPRNRLDKSLFRYVVAPLALEREPFDVCLVDDGG
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mRNA from alignment at CM002456.1:716492..718260-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna914 ID=rna914|Name=rna914|organism=Nannochloropsis gaditana|type=mRNA|length=1769bp|location=Sequence derived from alignment at CM002456.1:716492..718260- (Nannochloropsis gaditana)
AAAAATAAAAATATGGGATGGTGAGCTGTATATTGCGATGGTCGGATCTG
AGGGGTGGTCCAGGCGAAGCTGTGGGCGGCCGTGGTCAGGGCCTGGAAGG
CAGAGACTCTCCCCTCGGAGGCAGTCCTCGTTCTTTTTCGGCGAGTGGCG
CGAACACTTGAAAGTGTTGCCATAAGTTCTGGTCATAGCAAAGGTCATGT
GGTCATATCAAACCTGTTTAGGTGGTCTGTAGGGACCCACCCATGCACAT
CTATACTTGTGAGCCCTTCTTTTAGATAAAATATAAATCAATCCAGTTGT
TTAGATTTGAGGTGGATGGGAGGAAGACGATCAAGCCGTTCAAAGGGCTT
GAAACTAGTGAGTGCGATTATTCCTCATAAAGCCTTTAGGAAACATATTA
GAGACTTTTATGGACTCTCTGCATGCTGTAGAAATAAATTGGTGAGTAGG
AACCCGAATTTCCTATTTTATCCTACTCGGATGCCCTCCACTCGACTCAG
CTTAAAAGAGTCCCCTATGAAATCCACGGAGGATGTTCTCACGGCACTTA
ATCGAATTATGAACCTACGGGAGTAAGAGCCTCAACGACAACATGACCTA
CATGGACTATCGACAACAAAGTTTGAGGAGCTACTGGCCGCCGCATACGA
CAGGTCGCTGGGCATCAAGAGCATGCCATCTCGTCAACAACCAAAGCGGA
TATACAACATCAGCGAATTTCCATCTCACTATCGCATTAAAGGGGGTGTG
GACGATTCTGACCGGCAACTTTTGGGCGGCATCTACTCGGGTGTTACTTC
CTCCTTTGAGTATGGTCTTGGCGAATCGACGTATATTGCCGCCTGGACGA
GGATGCCTCGTTGGTCTGGAGTCGATTCAGACCCGGATTGGATTGTGGGC
TTGAGAAACAAAAGATTGATACCCTCGCACTTCCAATTTCATTTCGGGCA
TGTTGGCATGACAGGGGTATGGGGATATCCGAGAAACAGACTAGACAAAT
CGCTATTTCGGTATGTGGTTGCGCCGCTAGCGTTGGAGCGGGAGCCGTTC
GATGTCTGCCTCGTCGATGATGGCGGGTAGCCTGTGTTTGCATCAGCTTC
CTCCAGCAATGAGCACGGGAGCTGATATGGAGAGGGTTCGTGTCATGGTA
CACGATTACGACCGCATCAAATGGAACTATCAGGTTCTTGAAAAGGAGAT
TGCAGTCCTCGAGACGCGTTCAAACAAGCTTGCGGTGTTCAAGCCCAAGC
CTGACATTGGGGAGGGGGAGATTGGGAAACTATACCTGCGTCACATTGAT
AACCGTGATAGATGACGCAAGGATATGTACTGTCATGGAGCTGCCATAGT
GAGAAAAAAGACTTGAATTCTGGCTGGGAGAAATGACTTTTCCAAGTGTG
TGAAAAAACAAATAAATAAAAAATCACACCTGAATCAAAATTACGAAAGC
AAAAGTTCTAGCTGGTGCTGGTTGTATTCGTCTCTTTTCCCGCAGATACC
CCATTTTAAAGCACGACAGACACGATCCCCTCCCGAGTCGCAAGGGGGAT
TGATCTGTTTCGACAAGGGTTGAAAGTAGCGCGTATCGTAAACCCAAGTT
GTTGCAGCGACACATTAAGCTGAAGCTGCTTGTATCGTCCCATCGAATCT
GTTTCGTAGAGTTTGGGCTCCAGAAATCATGTAGTGATCACAGATCCAGG
AGCTCAGCTGACCACGATGCCTTTTTCGAGCATCCTTCTAAAGTAATATC
GGTACGCGAAGCCCTTTTC
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Coding sequence (CDS) from alignment at CM002456.1:716492..718260-

>rna914 ID=rna914|Name=rna914|organism=Nannochloropsis gaditana|type=CDS|length=408bp|location=Sequence derived from alignment at CM002456.1:716492..718260- (Nannochloropsis gaditana)
ATGCCATCTCGTCAACAACCAAAGCGGATATACAACATCAGCGAATTTCC
ATCTCACTATCGCATTAAAGGGGGTGTGGACGATTCTGACCGGCAACTTT
TGGGCGGCATCTACTCGGGTGTTACTTCCTCCTTTGAGTATGGTCTTGGC
GAATCGACGTATATTGCCGCCTGGACGAGGATGCCTCGTTGGTCTGGAGT
CGATTCAGACCCGGATTGGATTGTGGGCTTGAGAAACAAAAGATTGATAC
CCTCGCACTTCCAATTTCATTTCGGGCATGTTGGCATGACAGGGGTATGG
GGATATCCGAGAAACAGACTAGACAAATCGCTATTTCGGTATGTGGTTGC
GCCGCTAGCGTTGGAGCGGGAGCCGTTCGATGTCTGCCTCGTCGATGATG
GCGGGTAG
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Synonyms
Publications