EWM29752.1, cds914 (CDS) Nannochloropsis gaditana

Overview
NameEWM29752.1
Unique Namecds914
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:717181..717588 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29752.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100022g27.851.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:717181..717588 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
Homology
BLAST of EWM29752.1 vs. NCBI_GenBank
Match: gi|585112332|gb|EWM29752.1| (hypothetical protein Naga_100022g27 [Nannochloropsis gaditana])

HSP 1 Score: 279.256 bits (713), Expect = 2.671e-95
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
Query:    1 MPSRQQPKRIYNISEFPSHYRIKGGVDDSDRQLLGGIYSGVTSSFEYGLGESTYIAAWTRMPRWSGVDSDPDWIVGLRNKRLIPSHFQFHFGHVGMTGVWGYPRNRLDKSLFRYVVAPLALEREPFDVCLVDDGG 135
            MPSRQQPKRIYNISEFPSHYRIKGGVDDSDRQLLGGIYSGVTSSFEYGLGESTYIAAWTRMPRWSGVDSDPDWIVGLRNKRLIPSHFQFHFGHVGMTGVWGYPRNRLDKSLFRYVVAPLALEREPFDVCLVDDGG
Sbjct:    1 MPSRQQPKRIYNISEFPSHYRIKGGVDDSDRQLLGGIYSGVTSSFEYGLGESTYIAAWTRMPRWSGVDSDPDWIVGLRNKRLIPSHFQFHFGHVGMTGVWGYPRNRLDKSLFRYVVAPLALEREPFDVCLVDDGG 135          
BLAST of EWM29752.1 vs. NCBI_GenBank
Match: gi|585100195|gb|EWM20517.1| (hypothetical protein Naga_100235g7 [Nannochloropsis gaditana])

HSP 1 Score: 119.398 bits (298), Expect = 2.642e-30
Identity = 58/122 (47.54%), Postives = 80/122 (65.57%), Query Frame = 0
Query:   11 YNISEFPSHYRIKGGVDDSDRQLLGGIYSGVTSSFEYGLGESTYIAAWTRMPRWSGVDSDPDWIVGLRNKRLIPSHFQFHFGHVGMTGVWGYPRNRLDKSLFRYVVAPLALEREPFDVCLVD 132
            +N++E+       GG+ +SDR LLG IY   +S FE+GLGEST IAA+  +PR+SG+DSDP+W+V  R+K +   H++F+   +G TG WGYP  +L K    Y    L +E EPFDV LVD
Sbjct:  100 FNVNEWKGKNLSSGGLTESDRVLLGSIYYDASSVFEFGLGESTQIAAYVGVPRYSGIDSDPNWVVQARDK-VNKGHYKFYLADIGQTGAWGYPTAKLHKIPLNYQFQALRIEIEPFDVYLVD 220          
BLAST of EWM29752.1 vs. NCBI_GenBank
Match: gi|1210518151|dbj|GAX23082.1| (hypothetical protein FisN_15Hu016 [Fistulifera solaris])

HSP 1 Score: 115.546 bits (288), Expect = 1.094e-28
Identity = 56/127 (44.09%), Postives = 80/127 (62.99%), Query Frame = 0
Query:    6 QPKRIYNISEFPSHYRIKGGVDDSDRQLLGGIYSGVTSSFEYGLGESTYIAAWTRMPRWSGVDSDPDWIVGLRNKRLIPSHFQFHFGHVGMTGVWGYPRNRLDKSLFRYVVAPLALEREPFDVCLVD 132
            +P+  + ++ +    +  GG+ D DR LLG IYS   S FE+GLGESTYIA+   + R++G+DSD +W+   R+K L   HF+F+   +G TG+WGYP   L K+   Y VAP+  E  PFDV +VD
Sbjct:   96 EPRTTFRLASWTQ--KTTGGLTDQDRTLLGRIYSEADSVFEWGLGESTYIASHVGVRRYAGIDSDAEWVANARDKSL--PHFRFYLADIGKTGIWGYPEKELAKASLDYQVAPMLSEELPFDVYMVD 218          
BLAST of EWM29752.1 vs. NCBI_GenBank
Match: gi|1210515408|dbj|GAX25649.1| (hypothetical protein FisN_15Lh015 [Fistulifera solaris])

HSP 1 Score: 109.768 bits (273), Expect = 1.510e-26
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 0
Query:   24 GGVDDSDRQLLGGIYSGVTSSFEYGLGESTYIAAWTRMPRWSGVDSDPDWIVGLRNKRLIPSHFQFHFGHVGMTGVWGYPRNRLDKSLFRYVVAPLALEREPFDVCLVD 132
            GG+ + DR +L  +Y    S FE+GLGESTYIA+   +PR++G+DSD  W+   RN+ L  SHF+F+   +G TG+WGYP   L KS   Y +APL  E+ PFDV +VD
Sbjct:  105 GGLTEEDRLVLAKMYFEADSVFEWGLGESTYIASHVGVPRYAGIDSDAVWVANARNQSL--SHFRFYLADIGNTGLWGYPEETLPKSYLDYQLAPLLSEQLPFDVYMVD 211          
BLAST of EWM29752.1 vs. NCBI_GenBank
Match: gi|1210518152|dbj|GAX23083.1| (hypothetical protein FisN_15Hh015 [Fistulifera solaris])

HSP 1 Score: 108.612 bits (270), Expect = 4.841e-26
Identity = 53/109 (48.62%), Postives = 70/109 (64.22%), Query Frame = 0
Query:   24 GGVDDSDRQLLGGIYSGVTSSFEYGLGESTYIAAWTRMPRWSGVDSDPDWIVGLRNKRLIPSHFQFHFGHVGMTGVWGYPRNRLDKSLFRYVVAPLALEREPFDVCLVD 132
            GG+ + DR +L  IY    S FE+GLGESTYIA+   +PR++G+DSD  W+   RN+ L   HF+F+   +G TG+WGYP   L KS   Y +APL  E  PFDV +VD
Sbjct:  105 GGLTEEDRLVLAKIYYEADSVFEWGLGESTYIASHVGVPRYAGIDSDAVWVANARNQSL--PHFRFYLADIGNTGLWGYPEENLPKSYLDYQLAPLLSEHLPFDVYMVD 211          
BLAST of EWM29752.1 vs. NCBI_GenBank
Match: gi|1199286590|gb|OUS41740.1| (hypothetical protein BE221DRAFT_196616 [Ostreococcus tauri])

HSP 1 Score: 105.145 bits (261), Expect = 9.574e-26
Identity = 53/110 (48.18%), Postives = 74/110 (67.27%), Query Frame = 0
Query:   24 GGVDDSDRQLLGGIYSGVTSSFEYGLGESTYIAAWTRMPRWSGVDSDPDWIVGLRNKRLIPSHFQFHFGHVGMTGVWGYPRN-RLDKSLFRYVVAPLALEREPFDVCLVD 132
            GG+DD+DR LL  +YS   S FE+GLGEST IA+ T + R+SG+DSD  ++   RN+   P+HF+F+F  +G T  WG P++ +L K   +Y V+PL  E + FDV LVD
Sbjct:   12 GGLDDADRSLLLKMYSSARSVFEWGLGESTRIASATGVARYSGIDSDASYVSKCRNES--PTHFKFYFADIGNTKAWGVPKDQKLPKQSMQYQVSPLLSELQAFDVYLVD 119          
BLAST of EWM29752.1 vs. NCBI_GenBank
Match: gi|1072222895|gb|OEU07653.1| (hypothetical protein FRACYDRAFT_264815 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 105.531 bits (262), Expect = 1.351e-24
Identity = 56/110 (50.91%), Postives = 72/110 (65.45%), Query Frame = 0
Query:   24 GGVDDSDRQLLGGIYSGVTSSFEYGLGESTYIAAWTRMPRWSGVDSDPDWIVGLRNKRLIPSHFQFHFGHVGMTGVWGYPRNRLDKSLFRYVVAPLALER-EPFDVCLVD 132
            GG+ D+DR  LG IY    S FEYGLGEST IAA+  +PR+SGVDSDP ++   R   L P +F+F+F  +G T  WGYP   L K+ F Y V+ L  E+ +PFDV +VD
Sbjct:  123 GGLSDNDRIALGKIYGKANSIFEYGLGESTSIAAYVGVPRYSGVDSDPAYVSYART--LAPDYFRFYFADIGPTKDWGYPNRTLLKNKFNYQVSSLLSEKNKPFDVYMVD 230          
The following BLAST results are available for this feature:
BLAST of EWM29752.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585112332|gb|EWM29752.1|2.671e-95100.00hypothetical protein Naga_100022g27 [Nannochlorops... [more]
gi|585100195|gb|EWM20517.1|2.642e-3047.54hypothetical protein Naga_100235g7 [Nannochloropsi... [more]
gi|1210518151|dbj|GAX23082.1|1.094e-2844.09hypothetical protein FisN_15Hu016 [Fistulifera sol... [more]
gi|1210515408|dbj|GAX25649.1|1.510e-2648.62hypothetical protein FisN_15Lh015 [Fistulifera sol... [more]
gi|1210518152|dbj|GAX23083.1|4.841e-2648.62hypothetical protein FisN_15Hh015 [Fistulifera sol... [more]
gi|1199286590|gb|OUS41740.1|9.574e-2648.18hypothetical protein BE221DRAFT_196616 [Ostreococc... [more]
gi|1072222895|gb|OEU07653.1|1.351e-2450.91hypothetical protein FRACYDRAFT_264815 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna914rna914Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications