EWM29752.1, cds914 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29752.1 vs. NCBI_GenBank
Match: gi|585112332|gb|EWM29752.1| (hypothetical protein Naga_100022g27 [Nannochloropsis gaditana]) HSP 1 Score: 279.256 bits (713), Expect = 2.671e-95 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
Query: 1 MPSRQQPKRIYNISEFPSHYRIKGGVDDSDRQLLGGIYSGVTSSFEYGLGESTYIAAWTRMPRWSGVDSDPDWIVGLRNKRLIPSHFQFHFGHVGMTGVWGYPRNRLDKSLFRYVVAPLALEREPFDVCLVDDGG 135
MPSRQQPKRIYNISEFPSHYRIKGGVDDSDRQLLGGIYSGVTSSFEYGLGESTYIAAWTRMPRWSGVDSDPDWIVGLRNKRLIPSHFQFHFGHVGMTGVWGYPRNRLDKSLFRYVVAPLALEREPFDVCLVDDGG
Sbjct: 1 MPSRQQPKRIYNISEFPSHYRIKGGVDDSDRQLLGGIYSGVTSSFEYGLGESTYIAAWTRMPRWSGVDSDPDWIVGLRNKRLIPSHFQFHFGHVGMTGVWGYPRNRLDKSLFRYVVAPLALEREPFDVCLVDDGG 135
BLAST of EWM29752.1 vs. NCBI_GenBank
Match: gi|585100195|gb|EWM20517.1| (hypothetical protein Naga_100235g7 [Nannochloropsis gaditana]) HSP 1 Score: 119.398 bits (298), Expect = 2.642e-30 Identity = 58/122 (47.54%), Postives = 80/122 (65.57%), Query Frame = 0
Query: 11 YNISEFPSHYRIKGGVDDSDRQLLGGIYSGVTSSFEYGLGESTYIAAWTRMPRWSGVDSDPDWIVGLRNKRLIPSHFQFHFGHVGMTGVWGYPRNRLDKSLFRYVVAPLALEREPFDVCLVD 132
+N++E+ GG+ +SDR LLG IY +S FE+GLGEST IAA+ +PR+SG+DSDP+W+V R+K + H++F+ +G TG WGYP +L K Y L +E EPFDV LVD
Sbjct: 100 FNVNEWKGKNLSSGGLTESDRVLLGSIYYDASSVFEFGLGESTQIAAYVGVPRYSGIDSDPNWVVQARDK-VNKGHYKFYLADIGQTGAWGYPTAKLHKIPLNYQFQALRIEIEPFDVYLVD 220
BLAST of EWM29752.1 vs. NCBI_GenBank
Match: gi|1210518151|dbj|GAX23082.1| (hypothetical protein FisN_15Hu016 [Fistulifera solaris]) HSP 1 Score: 115.546 bits (288), Expect = 1.094e-28 Identity = 56/127 (44.09%), Postives = 80/127 (62.99%), Query Frame = 0
Query: 6 QPKRIYNISEFPSHYRIKGGVDDSDRQLLGGIYSGVTSSFEYGLGESTYIAAWTRMPRWSGVDSDPDWIVGLRNKRLIPSHFQFHFGHVGMTGVWGYPRNRLDKSLFRYVVAPLALEREPFDVCLVD 132
+P+ + ++ + + GG+ D DR LLG IYS S FE+GLGESTYIA+ + R++G+DSD +W+ R+K L HF+F+ +G TG+WGYP L K+ Y VAP+ E PFDV +VD
Sbjct: 96 EPRTTFRLASWTQ--KTTGGLTDQDRTLLGRIYSEADSVFEWGLGESTYIASHVGVRRYAGIDSDAEWVANARDKSL--PHFRFYLADIGKTGIWGYPEKELAKASLDYQVAPMLSEELPFDVYMVD 218
BLAST of EWM29752.1 vs. NCBI_GenBank
Match: gi|1210515408|dbj|GAX25649.1| (hypothetical protein FisN_15Lh015 [Fistulifera solaris]) HSP 1 Score: 109.768 bits (273), Expect = 1.510e-26 Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 0
Query: 24 GGVDDSDRQLLGGIYSGVTSSFEYGLGESTYIAAWTRMPRWSGVDSDPDWIVGLRNKRLIPSHFQFHFGHVGMTGVWGYPRNRLDKSLFRYVVAPLALEREPFDVCLVD 132
GG+ + DR +L +Y S FE+GLGESTYIA+ +PR++G+DSD W+ RN+ L SHF+F+ +G TG+WGYP L KS Y +APL E+ PFDV +VD
Sbjct: 105 GGLTEEDRLVLAKMYFEADSVFEWGLGESTYIASHVGVPRYAGIDSDAVWVANARNQSL--SHFRFYLADIGNTGLWGYPEETLPKSYLDYQLAPLLSEQLPFDVYMVD 211
BLAST of EWM29752.1 vs. NCBI_GenBank
Match: gi|1210518152|dbj|GAX23083.1| (hypothetical protein FisN_15Hh015 [Fistulifera solaris]) HSP 1 Score: 108.612 bits (270), Expect = 4.841e-26 Identity = 53/109 (48.62%), Postives = 70/109 (64.22%), Query Frame = 0
Query: 24 GGVDDSDRQLLGGIYSGVTSSFEYGLGESTYIAAWTRMPRWSGVDSDPDWIVGLRNKRLIPSHFQFHFGHVGMTGVWGYPRNRLDKSLFRYVVAPLALEREPFDVCLVD 132
GG+ + DR +L IY S FE+GLGESTYIA+ +PR++G+DSD W+ RN+ L HF+F+ +G TG+WGYP L KS Y +APL E PFDV +VD
Sbjct: 105 GGLTEEDRLVLAKIYYEADSVFEWGLGESTYIASHVGVPRYAGIDSDAVWVANARNQSL--PHFRFYLADIGNTGLWGYPEENLPKSYLDYQLAPLLSEHLPFDVYMVD 211
BLAST of EWM29752.1 vs. NCBI_GenBank
Match: gi|1199286590|gb|OUS41740.1| (hypothetical protein BE221DRAFT_196616 [Ostreococcus tauri]) HSP 1 Score: 105.145 bits (261), Expect = 9.574e-26 Identity = 53/110 (48.18%), Postives = 74/110 (67.27%), Query Frame = 0
Query: 24 GGVDDSDRQLLGGIYSGVTSSFEYGLGESTYIAAWTRMPRWSGVDSDPDWIVGLRNKRLIPSHFQFHFGHVGMTGVWGYPRN-RLDKSLFRYVVAPLALEREPFDVCLVD 132
GG+DD+DR LL +YS S FE+GLGEST IA+ T + R+SG+DSD ++ RN+ P+HF+F+F +G T WG P++ +L K +Y V+PL E + FDV LVD
Sbjct: 12 GGLDDADRSLLLKMYSSARSVFEWGLGESTRIASATGVARYSGIDSDASYVSKCRNES--PTHFKFYFADIGNTKAWGVPKDQKLPKQSMQYQVSPLLSELQAFDVYLVD 119
BLAST of EWM29752.1 vs. NCBI_GenBank
Match: gi|1072222895|gb|OEU07653.1| (hypothetical protein FRACYDRAFT_264815 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 105.531 bits (262), Expect = 1.351e-24 Identity = 56/110 (50.91%), Postives = 72/110 (65.45%), Query Frame = 0
Query: 24 GGVDDSDRQLLGGIYSGVTSSFEYGLGESTYIAAWTRMPRWSGVDSDPDWIVGLRNKRLIPSHFQFHFGHVGMTGVWGYPRNRLDKSLFRYVVAPLALER-EPFDVCLVD 132
GG+ D+DR LG IY S FEYGLGEST IAA+ +PR+SGVDSDP ++ R L P +F+F+F +G T WGYP L K+ F Y V+ L E+ +PFDV +VD
Sbjct: 123 GGLSDNDRIALGKIYGKANSIFEYGLGESTSIAAYVGVPRYSGVDSDPAYVSYART--LAPDYFRFYFADIGPTKDWGYPNRTLLKNKFNYQVSSLLSEKNKPFDVYMVD 230 The following BLAST results are available for this feature:
BLAST of EWM29752.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 7
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|