rna9138, rna9138 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9138
Unique Name	rna9138
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4385
Alignment location	KK037251.1:420754..421775 +

Link to JBrowse

Properties


Property Name	Value
Product	copper homeostasis protein cutc
Orig transcript id	gnl\|cribi\|Naga_100012g91.1942.mrna
Orig protein id	gnl\|cribi\|Naga_100012g91.1942
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:420754..421775 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g91	gene8861	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9138	rna9138-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21610.1	cds9108	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:420754..421775+
coding sequence from alignment at KK037251.1:420754..421775+

mRNA sequence

>rna9138 ID=rna9138|Name=rna9138|organism=Nannochloropsis gaditana|type=mRNA|length=4385bp
TTTCACACAATTTAGCTGACGGCAAATGGACAAGGAAGGCAATTTCAAGC
ATAATCTACCGCCCCCTGCGGCTGACGAAGGTACCGATGTGTACCACTCC
GACCGCATAAAGGGCATGGCAAGCGTGGATCCCATCAACATTTCCTGGGA
AAATGTCTCCCTTCGAGTGCCTGTCAAAGGTAGCAAGATGAAAAAGAATG
TACTCGCGAATGTGTCCGGACGCCTGCAGGCGGGTCACATCAGCGCGATC
ATGGGTGCCAGCGGCTGCGGTAAAACGAGCCTCCTCAATGTTTTGGCTGG
GCGGGTGTTAGCAGTTAAGGGCGGGGAGCTGGACGGTCGGCTTCTGACCA
ACGGCAAGATGCGAGTCGAAAATGACTTCCGAAAAGTTACAGGATACGTC
ACACAGGAAGACACACTGTACGCCTGTCTGACAGTGTATGAAACTCTGCT
TTTGACGGCTTTTTTCAAGTTGGGCAACAGCATGGGCTCGCGGCAGATCC
TGGAGGACTACGTCTCCAGCGTGATAAATGACATGGGTCTTAAGAAATGC
CGTGACACGGCTATCGGTGACGAGATGATCAAGGGCGTGAGTGGAGGAGA
GCGAAAACGAGTCAGTATCGCAGTGGAATTGATTTCGAACCCCTCAGTAC
TCTTCCTGGATGAGCCCACGACGGGGCTGGACTCCTTTCAGGCGCTAGCA
GTCATGAGCTCGCTGAAAAGCCTGGCAGGGACCCAGCGGACCATCGTCAC
AGTCATCCACCAGCCCCGGTCTTCCATTTTCGCGATGCTCGACCGGCTTG
TCCTACTCTCAGAAGGCCGAACTATCTATGCGGGTCCTGTTTCAGAAGTG
ACGTCCTACTTCCAAAGACAGGGCTTCTCCTGCCCCGATGACTCGAGCCC
AGCAGACTACCTCCTGGACATTGCGGCGAAGGACTTTCGGACGAGCACGC
TGGAGGCGCTGAGCCAGCGCCGCATCGATGTCCTGACCGAGGCCTACGAG
AATTTTTCTCGCAAGGAGAAGGCGATCGCGCCCAAATCTTCTACCGGAGC
AGGGAAAGAGGCTGGGCCGGTGGCGGCGAACAAAGATCGCGGCGACCTTC
TGGTCCGGGCGTCAGTGGACGAAAAAAGCGTACGGGTAGGATGGTGGACT
CAAATCCGATTCCTTGCATGGCGAAACTTGATGGTGGCCTCCCGGAACAG
GATCGCACGGATAGTAGGAATCGCTTTGCCGGTGTTCTTTGGGCTGCTCT
TCGGAGCTATCTGGAGCAATCGCGACGCCGATCCTCAGAAGGCGATTCAG
GACCGCATCGGCCTTATGTTCATGGCCACAGTCCTCACGGGATTCCTGGG
TATGTCGGAGAACATTCAGACCTTTCCGATCGAAAAGCGGACGGTGCAGA
AAGAGCGGTCTTCGGGCCTTTACTCCCTTTCCGCTTACTACGTGGCCAAG
GTGGTGACCAACATCCCCTTCGCGCTGGCCGGACCTGTGCTCTTCTGCTG
CATTCTTTACCCCGCTGCGGGAATGCGCATGGGCCTGGAGCATTTCTTGG
TGTTTCTTGTGGTCATCATCATGCAGATTCTTGCAGCGGGGGCACTCGGG
ATGTTTCTGAGCAGCCTTGCGAGTGACCCGGAGATCGCCAACGCTATGGC
CCCAGCTTTCAACATCATCTTCACGGTTTTCAACGGTGTGCTGATCAACG
TCAATGATCTCCCCGATGGAACTCAGTGGCTGGCTATCATCGGCTACATT
CGATGGTCGTTTGAGGCTTTGGCAATCAACGAGTTCCGAGACCGGGCTAT
CTCGTGCGGTACCGCGGTGAGCCCGAGCACTTGCATCACTAATGGGAACG
AGATCCTCAAGCTGTATGACTACTATGACGGTGACATCGGCTTCTGTCTT
TTGTGGATTTTAGTCATCGCCCTTGTCATCCATTGCGTGACATTCGCGAA
CCTGTGGCGTAATGCCACCTCCTACTTAAGAATGCGGGTTCTACCTCCCG
CGGTGGAAGTGGCGGAGGAAAATGCCAAGATGGCCGTGGCTGTACGCGCT
GTACCGCCGAGTAAAGAGGAGGAGGAGAAGGCTCTGGAAGAAGTGAGCGT
CCGCGATGGGGGAGCCGGGGAGATGGCCAATGTGGCTGCAGTGAACGTAT
CGTGGCAAAACATCACCCTCAAAGTGGGCGCAAGGAAAGGACACGCCCCC
AAAATCGTGCTGAATGACGTGAGTGGAGAGGTTCGCAGCGGAGCATTGAC
GGCGATTATGGGCCCTACAGGCAGCGGGAAAAGCTCCTTGCTCATGGTCT
TGGCGGGCCGCGTGGCCCAAACAAAAGGAGCGACATTGACCGGCACCTTG
CTCACGAATGGAATCTGCCGGGACGCGGCGGCCTTCAAGAAAATCGCCAC
TTTCGTCACGCAAGATGACTTGCTCTTCGGACACCTCACCGTTAAGGAAA
CCCTGACGCTGGCCGCACACTTTGCACTGGGCTCCTCCAAGAATCCGGCG
CAGAAGGCATCGCTCGTGACCAGCGTAATCAACGACATGGGTCTGGGCAA
GACTGTCCACACGATCATTGGCGACGAGCGCGCGCGCGGCGTGAGCGGAG
GAGAGCGTAAGCGCGTTAGCATCGGCGTGGAGCTGATCAGCAATCCGGCG
GTCTTGTTGTTGGACGAGCCCACGAGCGGACTGGACGCCCACCAGGCCAA
CGCGGTCATGGCCGCTCTGAAGAAGCTGGCGCAGGCAAAGCGGACGATTG
TGGCCGTGATTCACCAGCCCCGTTCCTCCATTTTCGCCATGCTCGATGTT
CTGGTCCTCATCTCCGAGGGCCGGACTATCTACCTCGGTCCCGCCAAAGA
TGCCTCGCGCCATTTCGCCACACAGGGCTTCCCTTGCCCGCCGCATTTCA
ATGCCGCGGACCTGTTCCTGGACAAGATCTCCATGGACTACCGAACGGAG
GCCCTGGAGGCCGCCACCCGCCAGCGCATCGCCCATCTGGCCGACACCTG
GCACCGTCATCCCTACCCTGACGTTAATGACTCGGGCGCTGGAAGCTCCA
CAGGCTCCGCGGCCCCGCCTGTCCCCCGTGGTCCTAGTTGCAGGGATTTG
GCAGCCGCAGCGATGATCTCTCCACAGGAGCGAGGAGGATGGCTCAACAA
CCTGTACTACCTGACGTGGCGGGCCTCCAAAAGCGCCTACCGCAATACCT
TCGCGATGATTCTGCGCATCATGCTCAACGTCATGTTCGCACTCATTTTC
TCTGGTATTTGGCACGACGTGAGCAATACGCAGACGGGCATCCAGTCTTT
CGTGGGTATCATTTTCATGGTCTCCGTCAACGTGGCTTTCTCCAATACCC
AGGCAGTCATCACAACCTTCCCTGTGGAAAAGGGCATCGTCCAGAAGGAA
CAAGCCTCCAGCGCCTACAGCCTTTCGGCCTACTACTTGAGCAAGTTCTT
TTCAGAGCTGCCTTTAAACCTGGTGGGCCCCGCTATCTTTATCTCCATGG
TGTTCTGGATCATCAACTTCGACCACACCCTCGCCAACTACGGCGTTTTC
CTCGCGACCACCTGTCTGGCCTCCCTGTCCGCGGTCGGGCTCGGGATCTT
GATCTCCACCCTGGCCCCGAACACCGAGGTGGCGACCGCCCTCTCCCCCG
TCTTCAACGTGTTCTTCCTTATCTTTTCAGGCGTCCTCATCAACATTGAC
AGCCTGCCTGCCGGGGCTCGGTGGATCGCCTCCATCAGCCCCATCAAGTG
GACCGCCAACGCCCTGGCCCTGACCGAGTTCACGGGAGCAACATTCACCT
GTGTCCCCGAAGAGCGCTGTCTAGCCACAGGCGAGGAGGTCCTGTCCCTC
TACTCCTGGGATGAATCCACGGTAGGGCAAAGCATGCTGGCCATTTCTAT
TATCATGGGCGTCCTCCTCACTATGGGGTATGTGATTCTCCGAATGAGTT
TGCCCCGGTACATGACTGTGCAAGGAAAAGAAGAGCGACTGTAGCTCAAG
CTGCGGCCACGAAGGGGAGCATTGCACAATCGTCTGATAAGAGCACGGGC
CATAGTACCCGATCTGACGTAAGATGACATGGTACTTTGTTCAAAAACAG
GTTCGCATCATCATCGAAATTCGTGAGAACTTGGCAAATTTTAGTGACGT
CCTATTAAGAATGAATTTATTCTTATCATGCAGCAGTCGCTTCACCAAGA
AATAATATTAAAATTAAAAACCGTGCTATGCTCGAAAGTAGTTCCTCTTC
GCGTTCAGTAGTCACGCGCGACACCAAGCCATTACGCTTGCGAAATTCCC
ATCGGCCCCGTAAACACTAGCAAAGCAATTCAAAAAGAGGCTAGAAAGTT
GAAGCCAATGAAATCAAAGCAAGTGTACTCATAGG

protein sequence of rna9138

>rna9138-protein ID=rna9138-protein|Name=rna9138|organism=Nannochloropsis gaditana|type=polypeptide|length=276bp
MTQSNLRHHKILEVCVDSPEGLSIALPRADRIELCSDLDAGGLTPSYGLM
EMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLA
GVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPD
PPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHI
MAGAGVCLSNVSQLVATTGVREVHASCRSVGDIRGSGRGAVAEKVRAFGF
SGGQGGGVVGTDAAKIETLALLVHDL

mRNA from alignment at KK037251.1:420754..421775+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9138 ID=rna9138|Name=rna9138|organism=Nannochloropsis gaditana|type=mRNA|length=1022bp|location=Sequence derived from alignment at KK037251.1:420754..421775+ (Nannochloropsis gaditana)
CATCTAGCCTTTACAAGCGACGAGTCCTCATCTTAAAATGGTCATTATAC
CTATAAATCATATAGCGCCGGGAGGAAATGACACAGAGTAATTTGAGACA
CCACAAGATACTTGAGGTAAGAAAATCTGCTCTTTTTCGATCAGACTTTT
ACCTGCTATAAGAACGGATACTGGTTGGGTGATCGTGGTTTTCGGCAAGC
ATTTACATATAAAATTTTGTATCCCTTCAGGTTTGCGTCGACAGCCCCGA
AGGCCTCTCAATCGCTCTTCCCCGAGCAGATCGCATCGAGCTGTGCAGCG
ATCTGGACGCAGGGGGCCTCACGCCATCATATGGTTTGATGGAGATGGCg
atggccttggccaaaCGGCACGAGTCACCCCCACCAGTGTTGGCCATGAT
CCGTCCGCGCGCCGGCGACTTCTCTTATTCGGCCTTGGAGCTCGAGACAA
TGGCCCGGGACATCAAGGTAGCGCGACGCCTCGGACTGGCCGGCGTTGTG
TTCGGGGTGACCGATGCAGAGCGAGGAGATCTCGCCGTGCAGGCGATGCT
TTTCCTCACGGAGGCCGCCaaaggggacggggagggtggcgccCCGGCCC
TGAGCGTCACGCTTCATCGAGCCATCGACCTGACCCCCGACccgcccgcc
tgcctcctcgccctcatACAAGCCCTGCCTCCGCGCTCTCTGGACCGAGT
GCTCACCTCGGGAGGGGCCCTCTCCGCTTGGGAGGGACGACGGAACATCG
CGCGCATGGTCGAGGCCGTGGCTGGGACCGACGTGCACATCatggcaggg
gcgggggttTGCCTGAGCAACGTGTCGCAGCTGGTGGCGACGACcggggt
gagggaggtgCATGCTTCGTGCAGGAGTGTGGGGGATATACGGGGCTCTG
GCCGGGGGGCCGTTGCGGAGAAAGTCCGGGCATTCGGCTTttcggggggg
cagggcggaggAGTCGTAGGGACGGACGCCGCCAAAATAGAGACTCTTGC
ACTGCTTGTCCATGATTTGTAA

Coding sequence (CDS) from alignment at KK037251.1:420754..421775+

>rna9138 ID=rna9138|Name=rna9138|organism=Nannochloropsis gaditana|type=CDS|length=1662bp|location=Sequence derived from alignment at KK037251.1:420754..421775+ (Nannochloropsis gaditana)
ATGACACAGAGTAATTTGAGACACCACAAGATACTTGAGGTTTGCGTCGA
CAGCCCCGAAGGCCTCTCAATCGCTCTTCCCCGAGCAGATCGCATCGAGC
TGTGCAGCGATCTGGACGCAGGGGGCCTCACGCCATCATATGGTTTGATG
GAGATGGCgatggccttggccaaaCGGCACGAGTCACCCCCACCAGTGTT
GGCCATGATCCGTCCGCGCGCCGGCGACTTCTCTTATTCGGCCTTGGAGC
TCGAGACAATGGCCCGGGACATCAAGGTAGCGCGACGCCTCGGACTGGCC
GGCGTTGTGTTCGGGGTGACCGATGCAGAGCGAGGAGATCTCGCCGTGCA
GGCGATGCTTTTCCTCACGGAGGCCGCCaaaggggacggggagggtggcg
ccCCGGCCCTGAGCGTCACGCTTCATCGAGCCATCGACCTGACCCCCGAC
ccgcccgcctgcctcctcgccctcatACAAGCCCTGCCTCCGCGCTCTCT
GGACCGAGTGCTCACCTCGGGAGGGGCCCTCTCCGCTTGGGAGGGACGAC
GGAACATCGCGCGCATGGTCGAGGCCGTGGCTGGGACCGACGTGCACATC
atggcaggggcgggggttTGCCTGAGCAACGTGTCGCAGCTGGTGGCGAC
GACcggggtgagggaggtgCATGCTTCGTGCAGGAGTGTGGGGGATATAC
GGGGCTCTGGCCGGGGGGCCGTTGCGGAGAAAGTCCGGGCATTCGGCTTt
tcgggggggcagggcggaggAGTCGTAGGGACGGACGCCGCCAAAATAGA
GACTCTTGCACTGCTTGTCCATGATTTGTAAATGACACAGAGTAATTTGA
GACACCACAAGATACTTGAGGTTTGCGTCGACAGCCCCGAAGGCCTCTCA
ATCGCTCTTCCCCGAGCAGATCGCATCGAGCTGTGCAGCGATCTGGACGC
AGGGGGCCTCACGCCATCATATGGTTTGATGGAGATGGCgatggccttgg
ccaaaCGGCACGAGTCACCCCCACCAGTGTTGGCCATGATCCGTCCGCGC
GCCGGCGACTTCTCTTATTCGGCCTTGGAGCTCGAGACAATGGCCCGGGA
CATCAAGGTAGCGCGACGCCTCGGACTGGCCGGCGTTGTGTTCGGGGTGA
CCGATGCAGAGCGAGGAGATCTCGCCGTGCAGGCGATGCTTTTCCTCACG
GAGGCCGCCaaaggggacggggagggtggcgccCCGGCCCTGAGCGTCAC
GCTTCATCGAGCCATCGACCTGACCCCCGACccgcccgcctgcctcctcg
ccctcatACAAGCCCTGCCTCCGCGCTCTCTGGACCGAGTGCTCACCTCG
GGAGGGGCCCTCTCCGCTTGGGAGGGACGACGGAACATCGCGCGCATGGT
CGAGGCCGTGGCTGGGACCGACGTGCACATCatggcaggggcgggggttT
GCCTGAGCAACGTGTCGCAGCTGGTGGCGACGACcggggtgagggaggtg
CATGCTTCGTGCAGGAGTGTGGGGGATATACGGGGCTCTGGCCGGGGGGC
CGTTGCGGAGAAAGTCCGGGCATTCGGCTTttcgggggggcagggcggag
gAGTCGTAGGGACGGACGCCGCCAAAATAGAGACTCTTGCACTGCTTGTC
CATGATTTGTAA

Synonyms

Publications