EWM21610.1, cds9108 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21610.1 vs. NCBI_GenBank
Match: gi|585101865|gb|EWM21610.1| (copper homeostasis protein cutc [Nannochloropsis gaditana]) HSP 1 Score: 548.125 bits (1411), Expect = 0.000e+0 Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
Query: 1 MTQSNLRHHKILEVCVDSPEGLSIALPRADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASCRSVGDIRGSGRGAVAEKVRAFGFSGGQGGGVVGTDAAKIETLALLVHDL 276
MTQSNLRHHKILEVCVDSPEGLSIALPRADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASCRSVGDIRGSGRGAVAEKVRAFGFSGGQGGGVVGTDAAKIETLALLVHDL
Sbjct: 1 MTQSNLRHHKILEVCVDSPEGLSIALPRADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASCRSVGDIRGSGRGAVAEKVRAFGFSGGQGGGVVGTDAAKIETLALLVHDL 276
BLAST of EWM21610.1 vs. NCBI_GenBank
Match: gi|1094618701|emb|SER45693.1| (copper homeostasis protein [bacterium A52C2]) HSP 1 Score: 176.022 bits (445), Expect = 1.466e-50 Identity = 123/268 (45.90%), Postives = 153/268 (57.09%), Query Frame = 0
Query: 3 QSNLRHHKILEVCVDSPEGLSIALPR-ADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASCRSVGDIRGSGRGAVAEKVRAFGFSGGQGGGVVGTDAAKIETL 269
++ R +LE+CVD+ GL A+ ADRIELCS L+ GGLTPS GLM +A AL P V AMIRPR+G F + +L TM RD+ AR GLAGVV G A R D ++ A + A +G LSVTLHRA DL PDP A L I DR+LTSGGAL+A EG +A +VEA AG + ++AG+G+ NV++L+ T VREVHASCR V R + AFGF Q G TDAA + L
Sbjct: 2 NASSRGRVVLEICVDTATGLDAAVEGGADRIELCSALEIGGLTPSAGLMAIAGAL------PCSVHAMIRPRSGGFVFDEGDLATMLRDVDAARAAGLAGVVLG---ASRSDASLDAEMLARLVAHAEG------LSVTLHRAFDLVPDPLAALRTAIDL----GFDRILTSGGALTAQEGGAVLAELVEA-AGGRIAVLAGSGISAGNVAELLDRTAVREVHASCRMV-------RAKADPRAAAFGF---QNGSRRETDAAAVAAL 239
BLAST of EWM21610.1 vs. NCBI_GenBank
Match: gi|654571616|ref|WP_028038834.1| (copper homeostasis protein CutC [Caulobacter sp. URHA0033]) HSP 1 Score: 169.859 bits (429), Expect = 2.480e-48 Identity = 111/218 (50.92%), Postives = 133/218 (61.01%), Query Frame = 0
Query: 11 ILEVCVDSPEGLSIALPR-ADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASC 227
ILEVCVD+P GL+ A+ ADRIELCS L GLTP+ GLM +A E+P P+ MIRPR GDF Y A +L+ + RDI R GLAGVV G + G+L V A+ L A+G L VTLHRA DLTPDP A L I +R+LTSG AL+A G IA +VE AG + I+AG GV SNV++LVA TGVREVH SC
Sbjct: 6 ILEVCVDTPAGLAAAIEGGADRIELCSALALQGLTPAPGLMALAA------EAPIPIYPMIRPRNGDFVYDAGDLDAIFRDIDAVREAGLAGVVIG-ANRPAGELDVDALSMLVAHAEG--------LGVTLHRAFDLTPDPMAALETAIDL----GFERILTSGRALNAMAGAETIAALVERAAGR-IAILAGGGVNSSNVAELVARTGVREVHGSC 203
BLAST of EWM21610.1 vs. NCBI_GenBank
Match: gi|494949689|ref|WP_007675717.1| (copper homeostasis protein CutC [Caulobacter sp. AP07] >gi|398028498|gb|EJL22007.1| hypothetical protein involved in copper resistance [Caulobacter sp. AP07]) HSP 1 Score: 167.548 bits (423), Expect = 2.420e-47 Identity = 109/218 (50.00%), Postives = 133/218 (61.01%), Query Frame = 0
Query: 11 ILEVCVDSPEGLSIALPR-ADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASC 227
ILEVCVD+P GL+ A+ ADRIELCS L GLTP+ GLM +A E+P P+ MIRPR GDF Y A +L+ + RDI AR GLAGVV G + G+L +A+ L A+G L VTLHRA DLTPDP A L I +R+LTSG AL+A G IAR+VE G + I+AG GV SNV++L+A TGV EVH SC
Sbjct: 6 ILEVCVDTPAGLAAAIEGGADRIELCSALALQGLTPAPGLMAIAA------EAPIPIYPMIRPRHGDFVYDAGDLDAIFRDIDAARAAGLAGVVIG-ANLPSGELDAEALAMLVAHAEG--------LGVTLHRAFDLTPDPSAALETAID----LGFERILTSGCALNAMAGAETIARLVEQADGR-IAILAGGGVKPSNVAELIARTGVVEVHGSC 203
BLAST of EWM21610.1 vs. NCBI_GenBank
Match: gi|1098875279|emb|SFJ50673.1| (copper homeostasis protein [Caulobacter sp. UNC279MFTsu5.1]) HSP 1 Score: 162.155 bits (409), Expect = 2.814e-45 Identity = 111/218 (50.92%), Postives = 132/218 (60.55%), Query Frame = 0
Query: 11 ILEVCVDSPEGLSIALPRA-DRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASC 227
ILEVCVD+P GL+ A+ DRIELCS L GLTP+ GLM +A E+P P+ MIRPR GDF Y A +L+ M RDI R GLAGVV G + GDL V+A+ L A+ L VTLHRA DLTPDP A L I +R+LTSG AL+A G IA +VE AG + I+AG GV SNV++LVA TGVREVH SC
Sbjct: 6 ILEVCVDTPAGLAAAIAGGADRIELCSALALQGLTPTPGLMALAA------EAPIPIYPMIRPRNGDFVYDAGDLDAMFRDIDAVRAAGLAGVVIG-ANRPAGDLDVEALAMLVAHAED--------LGVTLHRAFDLTPDPFAALETAIDL----GFERILTSGQALNAMAGAETIAVLVERAAGR-IAILAGGGVNPSNVAELVARTGVREVHGSC 203
BLAST of EWM21610.1 vs. NCBI_GenBank
Match: gi|1125680439|ref|WP_075041456.1| (copper homeostasis protein CutC [Ochrobactrum intermedium]) HSP 1 Score: 160.614 bits (405), Expect = 7.569e-45 Identity = 114/243 (46.91%), Postives = 139/243 (57.20%), Query Frame = 0
Query: 11 ILEVCVDSPEGLSIALPR-ADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASCRSVGDIRGSGRGAVAEKVRAFGFSG 252
+LEVCVDS EGL A+ ADRIELCS L+ GGLTPS LME+A + P PV AMIRPRAG F +SA + MA DI AR GLAGVV G + A+ G L V + L AKG L TLHRA DL PD AL QA+ +R+LTSG L+A EG N+ R + AG + IM G+GV NV +++ TG EVHASCR + + S + AFGF+G
Sbjct: 4 LLEVCVDSAEGLYSAIEGGADRIELCSALELGGLTPSQALMELASTV------PIPVYAMIRPRAGSFCFSAEDEVIMAADIGNARNAGLAGVVLGASLAD-GSLDVTLLERLIAEAKG--------LGTTLHRAFDLVPDAET---ALEQAI-ALGFERILTSGLTLTAEEGLDNL-RHLAGKAGKRISIMPGSGVSAGNVGRIIEATGATEVHASCRVAVEEKDS-------RAIAFGFAG 219
BLAST of EWM21610.1 vs. NCBI_GenBank
Match: gi|1094011458|ref|WP_071007956.1| (copper homeostasis protein CutC [Rhizobium sp. LCM 4573] >gi|1092366943|gb|OHV77494.1| copper homeostasis protein CutC [Rhizobium sp. LCM 4573]) HSP 1 Score: 159.458 bits (402), Expect = 2.534e-44 Identity = 117/269 (43.49%), Postives = 154/269 (57.25%), Query Frame = 0
Query: 11 ILEVCVDSPEGLSIALPR-ADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLF--LTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASCRSVGDIRGSGRGAVAEKVRAFGFSGGQGGGVVGTDAAKIETLALLVHDL 276
+LEVCVDSP+GL+ A+ ADRIELCS LD GGLTPS GLM +A ++P PV AMIRPRAG F + + +T+ DI R GLAGVV G A R D+ + L L E A+G L VTLHRA DLTPDP A AL QA+ ++R+LTSG A+++ EG + R+V +G V IM G GV L+ V ++V TG E+H+SCR + + E+ AFGF Q TDA ++ + + + L
Sbjct: 4 LLEVCVDSPQGLAAAIKGGADRIELCSALDVGGLTPSPGLMVLA------AQAPIPVYAMIRPRAGSFVFDGDDEKTVMADIHAVRAAGLAGVVIG---ANRPDMTLDLPLLQRLMERAEG--------LGVTLHRAFDLTPDPNA---ALEQAV-DLGVERILTSGLAVNSSEGLDILKRLVRQASGR-VSIMPGGGVNLATVERVVTETGASEIHSSCRRLVENED-------ERASAFGF---QPPRSYATDAGIVKEMRVFLDRL 240
BLAST of EWM21610.1 vs. NCBI_GenBank
Match: gi|1099799494|emb|SFB48409.1| (copper homeostasis protein [Rhizobium sp. NFR07]) HSP 1 Score: 159.073 bits (401), Expect = 2.949e-44 Identity = 105/219 (47.95%), Postives = 129/219 (58.90%), Query Frame = 0
Query: 11 ILEVCVDSPEGLSIALPR-ADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASCR 228
+LEVCVDS EGL A+ ADRIELCS LD GGLTPS GLM +A ++P PV AMIRPRAG F + + E M DI AR GLAGVV G A R D + L T + + D A+ TLHRA DL PDP L I+ +R+LTSG A+ A +G + R+VE G + IMAG+G+ +NV ++ TGVREVHASCR
Sbjct: 4 LLEVCVDSAEGLEAAVEGGADRIELCSALDVGGLTPSRGLMALA------AKAPVPVYAMIRPRAGGFVFGPADREVMLADIDAARESGLAGVVLG---ASRADGGLDVDLLKTFSERAD------AMGRTLHRAFDLVPDPAEALEQAIEL----GFERILTSGLAVKAPDGVAVLRRLVEQADGR-ISIMAGSGITPANVIDIIRETGVREVHASCR 202
BLAST of EWM21610.1 vs. NCBI_GenBank
Match: gi|948067205|ref|WP_056726067.1| (copper homeostasis protein CutC [Caulobacter sp. Root655] >gi|946003432|gb|KRA56373.1| copper homeostasis protein CutC [Caulobacter sp. Root655]) HSP 1 Score: 159.458 bits (402), Expect = 3.235e-44 Identity = 106/218 (48.62%), Postives = 130/218 (59.63%), Query Frame = 0
Query: 11 ILEVCVDSPEGLSIALPR-ADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASC 227
ILEVCVD+P GL+ A+ ADRIELCS L GLTP+ GL +A+ E+ P+ MIRPR GDF Y +L+ + RDI R GLAGVV G + G+L V A+ L A+G L VTLHRA DLTPDP A L I +R+LTSG AL+A G IAR+VE G + I+AG GV SNV++L+A TGV EVH SC
Sbjct: 6 ILEVCVDTPAGLAAAIEGGADRIELCSALALQGLTPAPGL------IAQAAEAAIPIYPMIRPRNGDFVYDDGDLDAIFRDIDAVRAAGLAGVVIG-ANRPSGELDVDALAMLVAHAEG--------LGVTLHRAFDLTPDPFAALETAID----LGFERILTSGCALNAMAGAETIARLVEQADGR-IAILAGGGVKPSNVAELIARTGVVEVHGSC 203
BLAST of EWM21610.1 vs. NCBI_GenBank
Match: gi|665980250|ref|WP_031346210.1| (MULTISPECIES: copper homeostasis protein CutC [Ochrobactrum] >gi|1025935983|gb|OAB83775.1| copper homeostasis protein CutC [Ochrobactrum intermedium] >gi|1026783791|gb|OAE42215.1| copper homeostasis protein CutC [Ochrobactrum intermedium]) HSP 1 Score: 159.073 bits (401), Expect = 3.682e-44 Identity = 113/243 (46.50%), Postives = 139/243 (57.20%), Query Frame = 0
Query: 11 ILEVCVDSPEGLSIALPR-ADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASCRSVGDIRGSGRGAVAEKVRAFGFSG 252
+LEVCVDS EGL A+ ADRIELCS L+ GGLTPS LME+A + P PV AMIRPRAG F +SA + MA DI AR GLAGVV G + A+ G L V + L AKG L TLHRA DL PD AL QA+ +R+LTSG + +A EG N+ R + AG + IM G+GV NV +++ TG EVHASCR + + S + AFGF+G
Sbjct: 4 LLEVCVDSAEGLYSAIEGGADRIELCSALELGGLTPSQALMELASTV------PIPVYAMIRPRAGSFCFSAEDEVIMAADIGNARNAGLAGVVLGASLAD-GSLDVTLLERLIAEAKG--------LGTTLHRAFDLVPDAET---ALEQAI-ALGFERILTSGLSQTAEEGLDNL-RHLAGKAGKRISIMPGSGVSAGNVGRIIEATGATEVHASCRVAVEEKDS-------RAIAFGFAG 219 The following BLAST results are available for this feature:
BLAST of EWM21610.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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