EWM21610.1, cds9108 (CDS) Nannochloropsis gaditana

Overview
NameEWM21610.1
Unique Namecds9108
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:420831..420869 +
Alignment locationKK037251.1:420984..421775 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21610.1
Productcopper homeostasis protein cutc
Orig transcript idgnl|cribi|Naga_100012g91.1942.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:420831..420869 +
KK037251.1supercontigKK037251.1:420984..421775 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005507copper ion binding
Vocabulary: Biological Process
TermDefinition
GO:0008150biological_process
GO:0055070copper ion homeostasis
Vocabulary: INTERPRO
TermDefinition
IPR005627Cu_homeostasis_CutC
IPR023648Cu_homeostasis_CutC_dom
Homology
BLAST of EWM21610.1 vs. NCBI_GenBank
Match: gi|585101865|gb|EWM21610.1| (copper homeostasis protein cutc [Nannochloropsis gaditana])

HSP 1 Score: 548.125 bits (1411), Expect = 0.000e+0
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
Query:    1 MTQSNLRHHKILEVCVDSPEGLSIALPRADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASCRSVGDIRGSGRGAVAEKVRAFGFSGGQGGGVVGTDAAKIETLALLVHDL 276
            MTQSNLRHHKILEVCVDSPEGLSIALPRADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASCRSVGDIRGSGRGAVAEKVRAFGFSGGQGGGVVGTDAAKIETLALLVHDL
Sbjct:    1 MTQSNLRHHKILEVCVDSPEGLSIALPRADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASCRSVGDIRGSGRGAVAEKVRAFGFSGGQGGGVVGTDAAKIETLALLVHDL 276          
BLAST of EWM21610.1 vs. NCBI_GenBank
Match: gi|1094618701|emb|SER45693.1| (copper homeostasis protein [bacterium A52C2])

HSP 1 Score: 176.022 bits (445), Expect = 1.466e-50
Identity = 123/268 (45.90%), Postives = 153/268 (57.09%), Query Frame = 0
Query:    3 QSNLRHHKILEVCVDSPEGLSIALPR-ADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASCRSVGDIRGSGRGAVAEKVRAFGFSGGQGGGVVGTDAAKIETL 269
             ++ R   +LE+CVD+  GL  A+   ADRIELCS L+ GGLTPS GLM +A AL      P  V AMIRPR+G F +   +L TM RD+  AR  GLAGVV G   A R D ++ A +     A  +G      LSVTLHRA DL PDP A L   I        DR+LTSGGAL+A EG   +A +VEA AG  + ++AG+G+   NV++L+  T VREVHASCR V       R     +  AFGF   Q G    TDAA +  L
Sbjct:    2 NASSRGRVVLEICVDTATGLDAAVEGGADRIELCSALEIGGLTPSAGLMAIAGAL------PCSVHAMIRPRSGGFVFDEGDLATMLRDVDAARAAGLAGVVLG---ASRSDASLDAEMLARLVAHAEG------LSVTLHRAFDLVPDPLAALRTAIDL----GFDRILTSGGALTAQEGGAVLAELVEA-AGGRIAVLAGSGISAGNVAELLDRTAVREVHASCRMV-------RAKADPRAAAFGF---QNGSRRETDAAAVAAL 239          
BLAST of EWM21610.1 vs. NCBI_GenBank
Match: gi|654571616|ref|WP_028038834.1| (copper homeostasis protein CutC [Caulobacter sp. URHA0033])

HSP 1 Score: 169.859 bits (429), Expect = 2.480e-48
Identity = 111/218 (50.92%), Postives = 133/218 (61.01%), Query Frame = 0
Query:   11 ILEVCVDSPEGLSIALPR-ADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASC 227
            ILEVCVD+P GL+ A+   ADRIELCS L   GLTP+ GLM +A       E+P P+  MIRPR GDF Y A +L+ + RDI   R  GLAGVV G  +   G+L V A+  L   A+G        L VTLHRA DLTPDP A L   I        +R+LTSG AL+A  G   IA +VE  AG  + I+AG GV  SNV++LVA TGVREVH SC
Sbjct:    6 ILEVCVDTPAGLAAAIEGGADRIELCSALALQGLTPAPGLMALAA------EAPIPIYPMIRPRNGDFVYDAGDLDAIFRDIDAVREAGLAGVVIG-ANRPAGELDVDALSMLVAHAEG--------LGVTLHRAFDLTPDPMAALETAIDL----GFERILTSGRALNAMAGAETIAALVERAAGR-IAILAGGGVNSSNVAELVARTGVREVHGSC 203          
BLAST of EWM21610.1 vs. NCBI_GenBank
Match: gi|494949689|ref|WP_007675717.1| (copper homeostasis protein CutC [Caulobacter sp. AP07] >gi|398028498|gb|EJL22007.1| hypothetical protein involved in copper resistance [Caulobacter sp. AP07])

HSP 1 Score: 167.548 bits (423), Expect = 2.420e-47
Identity = 109/218 (50.00%), Postives = 133/218 (61.01%), Query Frame = 0
Query:   11 ILEVCVDSPEGLSIALPR-ADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASC 227
            ILEVCVD+P GL+ A+   ADRIELCS L   GLTP+ GLM +A       E+P P+  MIRPR GDF Y A +L+ + RDI  AR  GLAGVV G  +   G+L  +A+  L   A+G        L VTLHRA DLTPDP A L   I        +R+LTSG AL+A  G   IAR+VE   G  + I+AG GV  SNV++L+A TGV EVH SC
Sbjct:    6 ILEVCVDTPAGLAAAIEGGADRIELCSALALQGLTPAPGLMAIAA------EAPIPIYPMIRPRHGDFVYDAGDLDAIFRDIDAARAAGLAGVVIG-ANLPSGELDAEALAMLVAHAEG--------LGVTLHRAFDLTPDPSAALETAID----LGFERILTSGCALNAMAGAETIARLVEQADGR-IAILAGGGVKPSNVAELIARTGVVEVHGSC 203          
BLAST of EWM21610.1 vs. NCBI_GenBank
Match: gi|1098875279|emb|SFJ50673.1| (copper homeostasis protein [Caulobacter sp. UNC279MFTsu5.1])

HSP 1 Score: 162.155 bits (409), Expect = 2.814e-45
Identity = 111/218 (50.92%), Postives = 132/218 (60.55%), Query Frame = 0
Query:   11 ILEVCVDSPEGLSIALPRA-DRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASC 227
            ILEVCVD+P GL+ A+    DRIELCS L   GLTP+ GLM +A       E+P P+  MIRPR GDF Y A +L+ M RDI   R  GLAGVV G  +   GDL V+A+  L   A+         L VTLHRA DLTPDP A L   I        +R+LTSG AL+A  G   IA +VE  AG  + I+AG GV  SNV++LVA TGVREVH SC
Sbjct:    6 ILEVCVDTPAGLAAAIAGGADRIELCSALALQGLTPTPGLMALAA------EAPIPIYPMIRPRNGDFVYDAGDLDAMFRDIDAVRAAGLAGVVIG-ANRPAGDLDVEALAMLVAHAED--------LGVTLHRAFDLTPDPFAALETAIDL----GFERILTSGQALNAMAGAETIAVLVERAAGR-IAILAGGGVNPSNVAELVARTGVREVHGSC 203          
BLAST of EWM21610.1 vs. NCBI_GenBank
Match: gi|1125680439|ref|WP_075041456.1| (copper homeostasis protein CutC [Ochrobactrum intermedium])

HSP 1 Score: 160.614 bits (405), Expect = 7.569e-45
Identity = 114/243 (46.91%), Postives = 139/243 (57.20%), Query Frame = 0
Query:   11 ILEVCVDSPEGLSIALPR-ADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASCRSVGDIRGSGRGAVAEKVRAFGFSG 252
            +LEVCVDS EGL  A+   ADRIELCS L+ GGLTPS  LME+A  +      P PV AMIRPRAG F +SA +   MA DI  AR  GLAGVV G + A+ G L V  +  L   AKG        L  TLHRA DL PD      AL QA+     +R+LTSG  L+A EG  N+ R +   AG  + IM G+GV   NV +++  TG  EVHASCR   + + S       +  AFGF+G
Sbjct:    4 LLEVCVDSAEGLYSAIEGGADRIELCSALELGGLTPSQALMELASTV------PIPVYAMIRPRAGSFCFSAEDEVIMAADIGNARNAGLAGVVLGASLAD-GSLDVTLLERLIAEAKG--------LGTTLHRAFDLVPDAET---ALEQAI-ALGFERILTSGLTLTAEEGLDNL-RHLAGKAGKRISIMPGSGVSAGNVGRIIEATGATEVHASCRVAVEEKDS-------RAIAFGFAG 219          
BLAST of EWM21610.1 vs. NCBI_GenBank
Match: gi|1094011458|ref|WP_071007956.1| (copper homeostasis protein CutC [Rhizobium sp. LCM 4573] >gi|1092366943|gb|OHV77494.1| copper homeostasis protein CutC [Rhizobium sp. LCM 4573])

HSP 1 Score: 159.458 bits (402), Expect = 2.534e-44
Identity = 117/269 (43.49%), Postives = 154/269 (57.25%), Query Frame = 0
Query:   11 ILEVCVDSPEGLSIALPR-ADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLF--LTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASCRSVGDIRGSGRGAVAEKVRAFGFSGGQGGGVVGTDAAKIETLALLVHDL 276
            +LEVCVDSP+GL+ A+   ADRIELCS LD GGLTPS GLM +A       ++P PV AMIRPRAG F +   + +T+  DI   R  GLAGVV G   A R D+ +   L   L E A+G        L VTLHRA DLTPDP A   AL QA+    ++R+LTSG A+++ EG   + R+V   +G  V IM G GV L+ V ++V  TG  E+H+SCR + +          E+  AFGF   Q      TDA  ++ + + +  L
Sbjct:    4 LLEVCVDSPQGLAAAIKGGADRIELCSALDVGGLTPSPGLMVLA------AQAPIPVYAMIRPRAGSFVFDGDDEKTVMADIHAVRAAGLAGVVIG---ANRPDMTLDLPLLQRLMERAEG--------LGVTLHRAFDLTPDPNA---ALEQAV-DLGVERILTSGLAVNSSEGLDILKRLVRQASGR-VSIMPGGGVNLATVERVVTETGASEIHSSCRRLVENED-------ERASAFGF---QPPRSYATDAGIVKEMRVFLDRL 240          
BLAST of EWM21610.1 vs. NCBI_GenBank
Match: gi|1099799494|emb|SFB48409.1| (copper homeostasis protein [Rhizobium sp. NFR07])

HSP 1 Score: 159.073 bits (401), Expect = 2.949e-44
Identity = 105/219 (47.95%), Postives = 129/219 (58.90%), Query Frame = 0
Query:   11 ILEVCVDSPEGLSIALPR-ADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASCR 228
            +LEVCVDS EGL  A+   ADRIELCS LD GGLTPS GLM +A       ++P PV AMIRPRAG F +   + E M  DI  AR  GLAGVV G   A R D  +   L  T + + D      A+  TLHRA DL PDP   L   I+       +R+LTSG A+ A +G   + R+VE   G  + IMAG+G+  +NV  ++  TGVREVHASCR
Sbjct:    4 LLEVCVDSAEGLEAAVEGGADRIELCSALDVGGLTPSRGLMALA------AKAPVPVYAMIRPRAGGFVFGPADREVMLADIDAARESGLAGVVLG---ASRADGGLDVDLLKTFSERAD------AMGRTLHRAFDLVPDPAEALEQAIEL----GFERILTSGLAVKAPDGVAVLRRLVEQADGR-ISIMAGSGITPANVIDIIRETGVREVHASCR 202          
BLAST of EWM21610.1 vs. NCBI_GenBank
Match: gi|948067205|ref|WP_056726067.1| (copper homeostasis protein CutC [Caulobacter sp. Root655] >gi|946003432|gb|KRA56373.1| copper homeostasis protein CutC [Caulobacter sp. Root655])

HSP 1 Score: 159.458 bits (402), Expect = 3.235e-44
Identity = 106/218 (48.62%), Postives = 130/218 (59.63%), Query Frame = 0
Query:   11 ILEVCVDSPEGLSIALPR-ADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASC 227
            ILEVCVD+P GL+ A+   ADRIELCS L   GLTP+ GL      +A+  E+  P+  MIRPR GDF Y   +L+ + RDI   R  GLAGVV G  +   G+L V A+  L   A+G        L VTLHRA DLTPDP A L   I        +R+LTSG AL+A  G   IAR+VE   G  + I+AG GV  SNV++L+A TGV EVH SC
Sbjct:    6 ILEVCVDTPAGLAAAIEGGADRIELCSALALQGLTPAPGL------IAQAAEAAIPIYPMIRPRNGDFVYDDGDLDAIFRDIDAVRAAGLAGVVIG-ANRPSGELDVDALAMLVAHAEG--------LGVTLHRAFDLTPDPFAALETAID----LGFERILTSGCALNAMAGAETIARLVEQADGR-IAILAGGGVKPSNVAELIARTGVVEVHGSC 203          
BLAST of EWM21610.1 vs. NCBI_GenBank
Match: gi|665980250|ref|WP_031346210.1| (MULTISPECIES: copper homeostasis protein CutC [Ochrobactrum] >gi|1025935983|gb|OAB83775.1| copper homeostasis protein CutC [Ochrobactrum intermedium] >gi|1026783791|gb|OAE42215.1| copper homeostasis protein CutC [Ochrobactrum intermedium])

HSP 1 Score: 159.073 bits (401), Expect = 3.682e-44
Identity = 113/243 (46.50%), Postives = 139/243 (57.20%), Query Frame = 0
Query:   11 ILEVCVDSPEGLSIALPR-ADRIELCSDLDAGGLTPSYGLMEMAMALAKRHESPPPVLAMIRPRAGDFSYSALELETMARDIKVARRLGLAGVVFGVTDAERGDLAVQAMLFLTEAAKGDGEGGAPALSVTLHRAIDLTPDPPACLLALIQALPPRSLDRVLTSGGALSAWEGRRNIARMVEAVAGTDVHIMAGAGVCLSNVSQLVATTGVREVHASCRSVGDIRGSGRGAVAEKVRAFGFSG 252
            +LEVCVDS EGL  A+   ADRIELCS L+ GGLTPS  LME+A  +      P PV AMIRPRAG F +SA +   MA DI  AR  GLAGVV G + A+ G L V  +  L   AKG        L  TLHRA DL PD      AL QA+     +R+LTSG + +A EG  N+ R +   AG  + IM G+GV   NV +++  TG  EVHASCR   + + S       +  AFGF+G
Sbjct:    4 LLEVCVDSAEGLYSAIEGGADRIELCSALELGGLTPSQALMELASTV------PIPVYAMIRPRAGSFCFSAEDEVIMAADIGNARNAGLAGVVLGASLAD-GSLDVTLLERLIAEAKG--------LGTTLHRAFDLVPDAET---ALEQAI-ALGFERILTSGLSQTAEEGLDNL-RHLAGKAGKRISIMPGSGVSAGNVGRIIEATGATEVHASCRVAVEEKDS-------RAIAFGFAG 219          
The following BLAST results are available for this feature:
BLAST of EWM21610.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101865|gb|EWM21610.1|0.000e+0100.00copper homeostasis protein cutc [Nannochloropsis g... [more]
gi|1094618701|emb|SER45693.1|1.466e-5045.90copper homeostasis protein [bacterium A52C2][more]
gi|654571616|ref|WP_028038834.1|2.480e-4850.92copper homeostasis protein CutC [Caulobacter sp. U... [more]
gi|494949689|ref|WP_007675717.1|2.420e-4750.00copper homeostasis protein CutC [Caulobacter sp. A... [more]
gi|1098875279|emb|SFJ50673.1|2.814e-4550.92copper homeostasis protein [Caulobacter sp. UNC279... [more]
gi|1125680439|ref|WP_075041456.1|7.569e-4546.91copper homeostasis protein CutC [Ochrobactrum inte... [more]
gi|1094011458|ref|WP_071007956.1|2.534e-4443.49copper homeostasis protein CutC [Rhizobium sp. LCM... [more]
gi|1099799494|emb|SFB48409.1|2.949e-4447.95copper homeostasis protein [Rhizobium sp. NFR07][more]
gi|948067205|ref|WP_056726067.1|3.235e-4448.62copper homeostasis protein CutC [Caulobacter sp. R... [more]
gi|665980250|ref|WP_031346210.1|3.682e-4446.50MULTISPECIES: copper homeostasis protein CutC [Och... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9138rna9138Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications