rna9132, rna9132 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9132
Unique Name	rna9132
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	243
Alignment location	KK037251.1:404619..406186 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100012g83.1915.mrna
Orig protein id	gnl\|cribi\|Naga_100012g83.1915
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:404619..406186 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g83	gene8855	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9132	rna9132-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21583.1	cds9102	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:404619..406186-
coding sequence from alignment at KK037251.1:404619..406186-

mRNA sequence

>rna9132 ID=rna9132|Name=rna9132|organism=Nannochloropsis gaditana|type=mRNA|length=243bp
ATGTTCAGGAACTCAGGGCCTAAATGGGTCGAACTTTGCTCTCAGGTCTT
ATCACATCGAGATGATGTAGTATTGCTACTACAAGTTGACAAGACGGGCC
TAATAACTCCCGCTGTGGCGGCACGGCGCCCGACCTCTTCGTACGAGTCT
GTGCTGCATAGATATCAGGCTTGCTATCAGGACATCAGGACATATCATAT
CTATAAAATTAGCAACTCCTTATTACCTATGCGCGGAGCTTGA

protein sequence of rna9132

>rna9132-protein ID=rna9132-protein|Name=rna9132|organism=Nannochloropsis gaditana|type=polypeptide|length=239bp
MRGRFWTPKTKHRVSNKKLVTNNPHVARLSLGCEFTKQKLRITQYPIDSS
VQYIFSLRIYTNDSLKNLILRKKTEEEDKTLVEDTISAYRPVAPQNFRST
SEKCLGPTNSLAPVAAFSHRKDLSDESKRYLSEVERRDLEMEHVELTRVG
DGVSQLKQVAVDMNERIQVQKAELDPIVGQLAGYREDIGEVNQRLKAAAR
KGKRWGSFGRNLLCMLLLVGQMIALGYLVDFVIKENRKS

mRNA from alignment at KK037251.1:404619..406186-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9132 ID=rna9132|Name=rna9132|organism=Nannochloropsis gaditana|type=mRNA|length=1568bp|location=Sequence derived from alignment at KK037251.1:404619..406186- (Nannochloropsis gaditana)
ATGAGAGGTAGGTTTTGGACGCCTAAGACAAAACATAGAGTTAGCAATAA
AAAGCTTGTGACCAACAATCCGCACGTAGCCCGACTAAGCCTGGGATGCG
AATTTACAAAACAAAAGCTGCGAATAACCCAATATCCAATTGATTCTTCA
GTACAGTATATATTCTCCCTGAGAATATATACCAACGATTCACTCAAGAA
TCTTATACTAAGAAAGAAGACAGAAGAAGAAGACAAGACACTGGTCGAGG
TCAGTCCTGTTGTTTTTTTAAAGGCACTGTTTTGTTTGTTTATTCTTGAA
CTGTGTGCCGTCACGGCAAAGAGAGGGTCTGTCGGCGGAGGGAGCCCGCC
AGGCGAGGGGGGCATATGTCCTCCCTCTTGTCGCCCGGGTCGGGACGTCA
CGGAAAGGCTGTCTCATCGATAATGCTGGCATTACATACATTAAGGACAC
TATTTCAGCATATAGACCAGTAGCGCCCCAGAATTTCAGGTCCACTTCTG
AAAAATGCCTCGGGTAAGTTCATTGGATACTCAAACTGGGCCCTAACTGC
CTCGTACATGTACCCTGATGTCAAATTTCCATTTCTGCGCTTAATCGCGC
AACACAGGCCCACCAACAGTTTAGCACCGGTAGCCGCTTTCTCGGTACGT
CTTTTAGGCAACGAAATAGTGGATAGGTCGCGGTGTATTCGAAAGCAACT
GTCCTCATCAAACCTCCCCCACGGTTGCACTTGTTCATCCGCCAATACGG
CAACAAAGGCGTGGGCGGTGACGCTGCGCAGCACAGAAAAGATTTGTCAG
ATGAATCAAAACGATATTTGTCCGAGGTGGAACGTCGAGACCTGGAAATG
GTGAGTAAAAAGCAGACGATCAAATGACTAATGTGTGCAGTGGGAAGAAC
GACTTCAACGAAGATGCGGCTATTTCCGCTTGACATGATTAGTTTGGATG
AATGTACTGCGTCTCCATCTGCTCCAGAACGCTTTCACGTAAAATGAAGT
GAAGTAGCGACAAAGGGTCTTTCCTTCGTCTGAGATGACAGTCAGACCGG
AGGGCCGTATTGCTCACGGGTCAGCTTTATAATCTTGTACGAGCCAGAGT
TACAATTTTGCGGCTTTCTAATCATGAACACTGTCTGAAAATAAAAATTC
AAACAGGAGCATGTTGAGCTGACAAGAGTGGGAGATGGGGTGAGCCAGCT
CAAGCAGGTAGCAGTGGACATGAACGAGGTATGACAAGCTTTTGAGGATG
GAGGTCTACGTCATCCAGTAGAGTCGTGCTCACTTTCTCTGTCTTTGGGT
CCCCCCCCTTGCAATCCACCATAAATCTGCCTGTGGACTGCAGCGCATCC
AAGTCCAAAAAGCGGAACTGGACCCGATCGTAGGACAGCTGGCAGGCTAC
CGAGAGGACATCGGCGAGGTAAACCAACGCCTGAAAGCGGCGGCAAGGAA
GGGCAAGCGGTGGGGAAGCTTTGGTAGAAATCTGCTCTGCATGCTCCTTT
TGGTCGGTCAAATGATAGCTTTGGGATATCTTGTAGACTTTGTCATCAAG
GAGAACAGGAAAAGCTAA

Coding sequence (CDS) from alignment at KK037251.1:404619..406186-

>rna9132 ID=rna9132|Name=rna9132|organism=Nannochloropsis gaditana|type=CDS|length=4320bp|location=Sequence derived from alignment at KK037251.1:404619..406186- (Nannochloropsis gaditana)
CGCATCCAAGTCCAAAAAGCGGAACTGGACCCGATCGTAGGACAGCTGGC
AGGCTACCGAGAGGACATCGGCGAGGTAAACCAACGCCTGAAAGCGGCGG
CAAGGAAGGGCAAGCGGTGGGGAAGCTTTGGTAGAAATCTGCTCTGCATG
CTCCTTTTGGTCGGTCAAATGATAGCTTTGGGATATCTTGTAGACTTTGT
CATCAAGGAGAACAGGAAAAGCTAAGAGCATGTTGAGCTGACAAGAGTGG
GAGATGGGGTGAGCCAGCTCAAGCAGGTAGCAGTGGACATGAACGAGCAC
AGAAAAGATTTGTCAGATGAATCAAAACGATATTTGTCCGAGGTGGAACG
TCGAGACCTGGAAATGGCCCACCAACAGTTTAGCACCGGTAGCCGCTTTC
TCGGACACTATTTCAGCATATAGACCAGTAGCGCCCCAGAATTTCAGGTC
CACTTCTGAAAAATGCCTCGGATGAGAGGTAGGTTTTGGACGCCTAAGAC
AAAACATAGAGTTAGCAATAAAAAGCTTGTGACCAACAATCCGCACGTAG
CCCGACTAAGCCTGGGATGCGAATTTACAAAACAAAAGCTGCGAATAACC
CAATATCCAATTGATTCTTCAGTACAGTATATATTCTCCCTGAGAATATA
TACCAACGATTCACTCAAGAATCTTATACTAAGAAAGAAGACAGAAGAAG
AAGACAAGACACTGGTCGAGCGCATCCAAGTCCAAAAAGCGGAACTGGAC
CCGATCGTAGGACAGCTGGCAGGCTACCGAGAGGACATCGGCGAGGTAAA
CCAACGCCTGAAAGCGGCGGCAAGGAAGGGCAAGCGGTGGGGAAGCTTTG
GTAGAAATCTGCTCTGCATGCTCCTTTTGGTCGGTCAAATGATAGCTTTG
GGATATCTTGTAGACTTTGTCATCAAGGAGAACAGGAAAAGCTAAGAGCA
TGTTGAGCTGACAAGAGTGGGAGATGGGGTGAGCCAGCTCAAGCAGGTAG
CAGTGGACATGAACGAGCACAGAAAAGATTTGTCAGATGAATCAAAACGA
TATTTGTCCGAGGTGGAACGTCGAGACCTGGAAATGGCCCACCAACAGTT
TAGCACCGGTAGCCGCTTTCTCGGACACTATTTCAGCATATAGACCAGTA
GCGCCCCAGAATTTCAGGTCCACTTCTGAAAAATGCCTCGGATGAGAGGT
AGGTTTTGGACGCCTAAGACAAAACATAGAGTTAGCAATAAAAAGCTTGT
GACCAACAATCCGCACGTAGCCCGACTAAGCCTGGGATGCGAATTTACAA
AACAAAAGCTGCGAATAACCCAATATCCAATTGATTCTTCAGTACAGTAT
ATATTCTCCCTGAGAATATATACCAACGATTCACTCAAGAATCTTATACT
AAGAAAGAAGACAGAAGAAGAAGACAAGACACTGGTCGAGCGCATCCAAG
TCCAAAAAGCGGAACTGGACCCGATCGTAGGACAGCTGGCAGGCTACCGA
GAGGACATCGGCGAGGTAAACCAACGCCTGAAAGCGGCGGCAAGGAAGGG
CAAGCGGTGGGGAAGCTTTGGTAGAAATCTGCTCTGCATGCTCCTTTTGG
TCGGTCAAATGATAGCTTTGGGATATCTTGTAGACTTTGTCATCAAGGAG
AACAGGAAAAGCTAAGAGCATGTTGAGCTGACAAGAGTGGGAGATGGGGT
GAGCCAGCTCAAGCAGGTAGCAGTGGACATGAACGAGCACAGAAAAGATT
TGTCAGATGAATCAAAACGATATTTGTCCGAGGTGGAACGTCGAGACCTG
GAAATGGCCCACCAACAGTTTAGCACCGGTAGCCGCTTTCTCGGACACTA
TTTCAGCATATAGACCAGTAGCGCCCCAGAATTTCAGGTCCACTTCTGAA
AAATGCCTCGGATGAGAGGTAGGTTTTGGACGCCTAAGACAAAACATAGA
GTTAGCAATAAAAAGCTTGTGACCAACAATCCGCACGTAGCCCGACTAAG
CCTGGGATGCGAATTTACAAAACAAAAGCTGCGAATAACCCAATATCCAA
TTGATTCTTCAGTACAGTATATATTCTCCCTGAGAATATATACCAACGAT
TCACTCAAGAATCTTATACTAAGAAAGAAGACAGAAGAAGAAGACAAGAC
ACTGGTCGAGCGCATCCAAGTCCAAAAAGCGGAACTGGACCCGATCGTAG
GACAGCTGGCAGGCTACCGAGAGGACATCGGCGAGGTAAACCAACGCCTG
AAAGCGGCGGCAAGGAAGGGCAAGCGGTGGGGAAGCTTTGGTAGAAATCT
GCTCTGCATGCTCCTTTTGGTCGGTCAAATGATAGCTTTGGGATATCTTG
TAGACTTTGTCATCAAGGAGAACAGGAAAAGCTAAGAGCATGTTGAGCTG
ACAAGAGTGGGAGATGGGGTGAGCCAGCTCAAGCAGGTAGCAGTGGACAT
GAACGAGCACAGAAAAGATTTGTCAGATGAATCAAAACGATATTTGTCCG
AGGTGGAACGTCGAGACCTGGAAATGGCCCACCAACAGTTTAGCACCGGT
AGCCGCTTTCTCGGACACTATTTCAGCATATAGACCAGTAGCGCCCCAGA
ATTTCAGGTCCACTTCTGAAAAATGCCTCGGATGAGAGGTAGGTTTTGGA
CGCCTAAGACAAAACATAGAGTTAGCAATAAAAAGCTTGTGACCAACAAT
CCGCACGTAGCCCGACTAAGCCTGGGATGCGAATTTACAAAACAAAAGCT
GCGAATAACCCAATATCCAATTGATTCTTCAGTACAGTATATATTCTCCC
TGAGAATATATACCAACGATTCACTCAAGAATCTTATACTAAGAAAGAAG
ACAGAAGAAGAAGACAAGACACTGGTCGAGCGCATCCAAGTCCAAAAAGC
GGAACTGGACCCGATCGTAGGACAGCTGGCAGGCTACCGAGAGGACATCG
GCGAGGTAAACCAACGCCTGAAAGCGGCGGCAAGGAAGGGCAAGCGGTGG
GGAAGCTTTGGTAGAAATCTGCTCTGCATGCTCCTTTTGGTCGGTCAAAT
GATAGCTTTGGGATATCTTGTAGACTTTGTCATCAAGGAGAACAGGAAAA
GCTAAGAGCATGTTGAGCTGACAAGAGTGGGAGATGGGGTGAGCCAGCTC
AAGCAGGTAGCAGTGGACATGAACGAGCACAGAAAAGATTTGTCAGATGA
ATCAAAACGATATTTGTCCGAGGTGGAACGTCGAGACCTGGAAATGGCCC
ACCAACAGTTTAGCACCGGTAGCCGCTTTCTCGGACACTATTTCAGCATA
TAGACCAGTAGCGCCCCAGAATTTCAGGTCCACTTCTGAAAAATGCCTCG
GATGAGAGGTAGGTTTTGGACGCCTAAGACAAAACATAGAGTTAGCAATA
AAAAGCTTGTGACCAACAATCCGCACGTAGCCCGACTAAGCCTGGGATGC
GAATTTACAAAACAAAAGCTGCGAATAACCCAATATCCAATTGATTCTTC
AGTACAGTATATATTCTCCCTGAGAATATATACCAACGATTCACTCAAGA
ATCTTATACTAAGAAAGAAGACAGAAGAAGAAGACAAGACACTGGTCGAG
CGCATCCAAGTCCAAAAAGCGGAACTGGACCCGATCGTAGGACAGCTGGC
AGGCTACCGAGAGGACATCGGCGAGGTAAACCAACGCCTGAAAGCGGCGG
CAAGGAAGGGCAAGCGGTGGGGAAGCTTTGGTAGAAATCTGCTCTGCATG
CTCCTTTTGGTCGGTCAAATGATAGCTTTGGGATATCTTGTAGACTTTGT
CATCAAGGAGAACAGGAAAAGCTAAGAGCATGTTGAGCTGACAAGAGTGG
GAGATGGGGTGAGCCAGCTCAAGCAGGTAGCAGTGGACATGAACGAGCAC
AGAAAAGATTTGTCAGATGAATCAAAACGATATTTGTCCGAGGTGGAACG
TCGAGACCTGGAAATGGCCCACCAACAGTTTAGCACCGGTAGCCGCTTTC
TCGGACACTATTTCAGCATATAGACCAGTAGCGCCCCAGAATTTCAGGTC
CACTTCTGAAAAATGCCTCGGATGAGAGGTAGGTTTTGGACGCCTAAGAC
AAAACATAGAGTTAGCAATAAAAAGCTTGTGACCAACAATCCGCACGTAG
CCCGACTAAGCCTGGGATGCGAATTTACAAAACAAAAGCTGCGAATAACC
CAATATCCAATTGATTCTTCAGTACAGTATATATTCTCCCTGAGAATATA
TACCAACGATTCACTCAAGAATCTTATACTAAGAAAGAAGACAGAAGAAG
AAGACAAGACACTGGTCGAG

Synonyms

Publications