rna9126, rna9126 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9126
Unique Name	rna9126
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	504
Alignment location	KK037251.1:392832..394593 +

Link to JBrowse

Properties


Property Name	Value
Product	BRO1 domain protein
Orig transcript id	gnl\|cribi\|Naga_100012g77.1943.mrna
Orig protein id	gnl\|cribi\|Naga_100012g77.1943
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:392832..394593 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g77	gene8849	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9126	rna9126-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21611.1	cds9096	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:392832..394593+
coding sequence from alignment at KK037251.1:392832..394593+

mRNA sequence

>rna9126 ID=rna9126|Name=rna9126|organism=Nannochloropsis gaditana|type=mRNA|length=504bp
ATGGGTGTGCGTACCAAGACCGTAAAGAAATCAGCACGAGTGATAATCGA
GAAATACTACTCGCGCCTGACCATGGATTTTCACACCAACAAACGTGTTG
TCGACGAGGTAGCCGAGGTCCCGTCGAAGCGCATGCGCAACAAAATCGCT
GGCTTTGTCACGCACTTGATGAAGCGTATTCAGAAGGGGCCAGTCCGAGG
AATTTCCTTGAAACTGCAGGAGGAGGAGCGTGAGCGCCGCCTGGACTTCG
TGCCAGAAGTGTCATTGATCGAGCAAGAGCAACCAGAAGTGGATCAGGAC
CTGCGAGACTTGATGGAGCATATTGTGAGTAGGGGGGAGGAGACGAGCTG
CGAGGACAGGGGCCGCCACGAGCAGTACGAGACTCGAGAGGATGAGGAGG
ACGGAAGCGTGTCAGAGCGTTGGACCTTGAGCGTACCCTTGAGGAAGGAG
GTCTTTGAGCTCCTGTGTCAGCACGCATATTCCCAGAAGGCCTCAAAAAA
ATAA

protein sequence of rna9126

>rna9126-protein ID=rna9126-protein|Name=rna9126|organism=Nannochloropsis gaditana|type=polypeptide|length=405bp
MASTILPDGLRDSLLTLCTLVYPLPLPRGKKSGAAFAKAFSSVGTPEATT
SIMEGIDKVRQEFVDDVSKLKVSPAAVSTAADRYAPQLNRIIQSIDASQD
PVRLTQRMQFQWTSALNAQASPSEYKTQEVFIFEMAMVLASKALAQINQA
ANSIDPSADRYAEAATLLKSAGGVFLALAHDFLPRWKETPDNAAGRHPET
SEGVAMALVDLVSAQAQAMYVAKGVFAQTVPPGTLAKLSVTVMDRFEKCI
SNFKARASAHLARVDPDFLSYLIFMPALYRALAYRFLAIAHWEKEDHGTA
IGLLLQAEIILKARRDGVSSGLSGIEESRFLSAFKPQLEILRREVSSMLT
SWKRDNSTIYFAGIVDSASLPPLPTGANMVSITKYEYVSNLPPILFAEAA
EAKSS

mRNA from alignment at KK037251.1:392832..394593+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9126 ID=rna9126|Name=rna9126|organism=Nannochloropsis gaditana|type=mRNA|length=1762bp|location=Sequence derived from alignment at KK037251.1:392832..394593+ (Nannochloropsis gaditana)
GGCGACAGTCTTATTCTTGCATGTGAGTGACCCGGTGAGACGTCGATGCT
GATACTTGCCATCCATGCAATCTTTATTCCGATCAACATCTGTTGACAGG
GACTGACCGTAGACGTATGGCCTCCACCATATTGCCGGACGGATTGCGAG
ACTCTCTCTTGACCCTCTGCACGTTGGTCTATCCCCTTCCGTTACctaga
gggaagaaaagtggTGCTGCGTTTGCCAAAGCATTCTCATCCGTGGGCAC
GCCCGAAGCGACTACAAGTATTATGGAGGGAATTGATAAGGTGCGACAAG
AGTTTGTGGACGACGTCTCAAAGCTCAAGGTCAGCCCGGCCGCGGTTAGT
ACAGCAGCAGACCGCTATGCGCCACAGCTAAACCGTATAATTCAATCCAT
TGATGCGAGTGTAAGTGAGAGACGACTTCAAAAATAATAAGGAAAATGAT
GACTGATGTCATTCGTTAAAGTGCTGAAGAAGAATTCAAAAGTATGTCCA
CACCTACAGCCTATATCGCGTTAATTCTTCCCATTTTATCCatctccatt
ttcctcctaGCAAGATCCTGTCCGCCTCACCCAACGCATGCAATTTCAGT
GGACGTCTGCACTGAATGCACAGGCATCTCCTTCGGAGTATAAAACTCAA
GAAGTCTTTATCTTCGAAATGGCCATGGTTCTGGCTAGCAAGGCTCTTGC
ACAAATAAATCAAGCCGCAAACTCTATAGATCCCTCAGCCGACAGATACG
CGGAGGCGGCTACTCTTCTAAAAAGTGCGGGGGGAGTCTTTTTGGCTCTT
GCCCATGACTTTCTGCCGCGCTGGAAGGAGACGCCCGACAACGCTGCCGG
ACGGCATCCCGAGACGtcggagggggtggcgatggcccTGGTGGACCTCG
TCTCTGCGCAGGCACAGGCAATGTATGTCGCGAAGGGAGTCTTTGCGCAA
ACCGTACCTCCAGGAACGCTGGCCAAGCTGTCAGTGACGGTGATGGATCG
TTTTGAAAAGTGCATTTCCAATTTTAAGGCGCGGGCCTCCGCACACTTAG
CGCGCGTGGATCCAGACTTCCTCAGCTACTTGATTTTCATGCCGTAAGTG
TCAGAGAGTGAGTCCAGGGAGGAGTAGGTAGCTTGCAGGGATATTCAAGA
TTTGATTTTTGAGAATGTTTCCGCTTGGCCAAAACTTAAACGCCCACAAa
tcccttttcttcttgtgaCAAAGCGCTCTTTATCGTGCTCTAGCCTACCG
CTTTCTGGCCATTGCTCactgggagaaggaagaccATGGCACCGCAATCG
GACTCTTATTGCAAGCAGAGATTATATTAAAAGCTCGGCGGGATGGTGTA
TCATCGGGGCTCTCTGGAATAGAGGAATCTCGCTTTCTCTCTGCGTTTAA
GCCTCAATTAGAGATCCTGCGTCGAGAAGTGAGTAGCATGCTCACATCTT
GGAAGAGAGATAACAGTACGATTTATTTTGCAGGTATCGTGGATTCGGCg
agtcttcctccgcttccaacGGGGGCGAATATGGTTTCCATCACCAAGTA
TGAATACGTcagcaacctccccccgATTTTATTTGCCGAGGCAGCAGAAG
CCAAATCGTCATAGACTCTCAGAAAGATCGTTTTAGACCGCAAGCCATAA
ATTAAAATGTACAATTAAGTGTGTAATCCTAGACAAATCCTGAAAACGAA
ATACAACGAACATCTTTGAATCCCTTGTCAGCTAACTTCGCCATTCTTCT
CGGCATGAAACC

Coding sequence (CDS) from alignment at KK037251.1:392832..394593+

>rna9126 ID=rna9126|Name=rna9126|organism=Nannochloropsis gaditana|type=CDS|length=3654bp|location=Sequence derived from alignment at KK037251.1:392832..394593+ (Nannochloropsis gaditana)
ATGGCCTCCACCATATTGCCGGACGGATTGCGAGACTCTCTCTTGACCCT
CTGCACGTTGGTCTATCCCCTTCCGTTACctagagggaagaaaagtggTG
CTGCGTTTGCCAAAGCATTCTCATCCGTGGGCACGCCCGAAGCGACTACA
AGTATTATGGAGGGAATTGATAAGGTGCGACAAGAGTTTGTGGACGACGT
CTCAAAGCTCAAGGTCAGCCCGGCCGCGGTTAGTACAGCAGCAGACCGCT
ATGCGCCACAGCTAAACCGTATAATTCAATCCATTGATGCGAGTCAAGAT
CCTGTCCGCCTCACCCAACGCATGCAATTTCAGTGGACGTCTGCACTGAA
TGCACAGGCATCTCCTTCGGAGTATAAAACTCAAGAAGTCTTTATCTTCG
AAATGGCCATGGTTCTGGCTAGCAAGGCTCTTGCACAAATAAATCAAGCC
GCAAACTCTATAGATCCCTCAGCCGACAGATACGCGGAGGCGGCTACTCT
TCTAAAAAGTGCGGGGGGAGTCTTTTTGGCTCTTGCCCATGACTTTCTGC
CGCGCTGGAAGGAGACGCCCGACAACGCTGCCGGACGGCATCCCGAGACG
tcggagggggtggcgatggcccTGGTGGACCTCGTCTCTGCGCAGGCACA
GGCAATGTATGTCGCGAAGGGAGTCTTTGCGCAAACCGTACCTCCAGGAA
CGCTGGCCAAGCTGTCAGTGACGGTGATGGATCGTTTTGAAAAGTGCATT
TCCAATTTTAAGGCGCGGGCCTCCGCACACTTAGCGCGCGTGGATCCAGA
CTTCCTCAGCTACTTGATTTTCATGCCCGCTCTTTATCGTGCTCTAGCCT
ACCGCTTTCTGGCCATTGCTCactgggagaaggaagaccATGGCACCGCA
ATCGGACTCTTATTGCAAGCAGAGATTATATTAAAAGCTCGGCGGGATGG
TGTATCATCGGGGCTCTCTGGAATAGAGGAATCTCGCTTTCTCTCTGCGT
TTAAGCCTCAATTAGAGATCCTGCGTCGAGAAGTGAGTAGCATGCTCACA
TCTTGGAAGAGAGATAACAGTACGATTTATTTTGCAGGTATCGTGGATTC
GGCgagtcttcctccgcttccaacGGGGGCGAATATGGTTTCCATCACCA
AGTATGAATACGTcagcaacctccccccgATTTTATTTGCCGAGGCAGCA
GAAGCCAAATCGTCATAGATGGCCTCCACCATATTGCCGGACGGATTGCG
AGACTCTCTCTTGACCCTCTGCACGTTGGTCTATCCCCTTCCGTTACcta
gagggaagaaaagtggTGCTGCGTTTGCCAAAGCATTCTCATCCGTGGGC
ACGCCCGAAGCGACTACAAGTATTATGGAGGGAATTGATAAGGTGCGACA
AGAGTTTGTGGACGACGTCTCAAAGCTCAAGGTCAGCCCGGCCGCGGTTA
GTACAGCAGCAGACCGCTATGCGCCACAGCTAAACCGTATAATTCAATCC
ATTGATGCGAGTCAAGATCCTGTCCGCCTCACCCAACGCATGCAATTTCA
GTGGACGTCTGCACTGAATGCACAGGCATCTCCTTCGGAGTATAAAACTC
AAGAAGTCTTTATCTTCGAAATGGCCATGGTTCTGGCTAGCAAGGCTCTT
GCACAAATAAATCAAGCCGCAAACTCTATAGATCCCTCAGCCGACAGATA
CGCGGAGGCGGCTACTCTTCTAAAAAGTGCGGGGGGAGTCTTTTTGGCTC
TTGCCCATGACTTTCTGCCGCGCTGGAAGGAGACGCCCGACAACGCTGCC
GGACGGCATCCCGAGACGtcggagggggtggcgatggcccTGGTGGACCT
CGTCTCTGCGCAGGCACAGGCAATGTATGTCGCGAAGGGAGTCTTTGCGC
AAACCGTACCTCCAGGAACGCTGGCCAAGCTGTCAGTGACGGTGATGGAT
CGTTTTGAAAAGTGCATTTCCAATTTTAAGGCGCGGGCCTCCGCACACTT
AGCGCGCGTGGATCCAGACTTCCTCAGCTACTTGATTTTCATGCCCGCTC
TTTATCGTGCTCTAGCCTACCGCTTTCTGGCCATTGCTCactgggagaag
gaagaccATGGCACCGCAATCGGACTCTTATTGCAAGCAGAGATTATATT
AAAAGCTCGGCGGGATGGTGTATCATCGGGGCTCTCTGGAATAGAGGAAT
CTCGCTTTCTCTCTGCGTTTAAGCCTCAATTAGAGATCCTGCGTCGAGAA
GTGAGTAGCATGCTCACATCTTGGAAGAGAGATAACAGTACGATTTATTT
TGCAGGTATCGTGGATTCGGCgagtcttcctccgcttccaacGGGGGCGA
ATATGGTTTCCATCACCAAGTATGAATACGTcagcaacctccccccgATT
TTATTTGCCGAGGCAGCAGAAGCCAAATCGTCATAGATGGCCTCCACCAT
ATTGCCGGACGGATTGCGAGACTCTCTCTTGACCCTCTGCACGTTGGTCT
ATCCCCTTCCGTTACctagagggaagaaaagtggTGCTGCGTTTGCCAAA
GCATTCTCATCCGTGGGCACGCCCGAAGCGACTACAAGTATTATGGAGGG
AATTGATAAGGTGCGACAAGAGTTTGTGGACGACGTCTCAAAGCTCAAGG
TCAGCCCGGCCGCGGTTAGTACAGCAGCAGACCGCTATGCGCCACAGCTA
AACCGTATAATTCAATCCATTGATGCGAGTCAAGATCCTGTCCGCCTCAC
CCAACGCATGCAATTTCAGTGGACGTCTGCACTGAATGCACAGGCATCTC
CTTCGGAGTATAAAACTCAAGAAGTCTTTATCTTCGAAATGGCCATGGTT
CTGGCTAGCAAGGCTCTTGCACAAATAAATCAAGCCGCAAACTCTATAGA
TCCCTCAGCCGACAGATACGCGGAGGCGGCTACTCTTCTAAAAAGTGCGG
GGGGAGTCTTTTTGGCTCTTGCCCATGACTTTCTGCCGCGCTGGAAGGAG
ACGCCCGACAACGCTGCCGGACGGCATCCCGAGACGtcggagggggtggc
gatggcccTGGTGGACCTCGTCTCTGCGCAGGCACAGGCAATGTATGTCG
CGAAGGGAGTCTTTGCGCAAACCGTACCTCCAGGAACGCTGGCCAAGCTG
TCAGTGACGGTGATGGATCGTTTTGAAAAGTGCATTTCCAATTTTAAGGC
GCGGGCCTCCGCACACTTAGCGCGCGTGGATCCAGACTTCCTCAGCTACT
TGATTTTCATGCCCGCTCTTTATCGTGCTCTAGCCTACCGCTTTCTGGCC
ATTGCTCactgggagaaggaagaccATGGCACCGCAATCGGACTCTTATT
GCAAGCAGAGATTATATTAAAAGCTCGGCGGGATGGTGTATCATCGGGGC
TCTCTGGAATAGAGGAATCTCGCTTTCTCTCTGCGTTTAAGCCTCAATTA
GAGATCCTGCGTCGAGAAGTGAGTAGCATGCTCACATCTTGGAAGAGAGA
TAACAGTACGATTTATTTTGCAGGTATCGTGGATTCGGCgagtcttcctc
cgcttccaacGGGGGCGAATATGGTTTCCATCACCAAGTATGAATACGTc
agcaacctccccccgATTTTATTTGCCGAGGCAGCAGAAGCCAAATCGTC
ATAG

Synonyms

Publications