rna9125, rna9125 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9125
Unique Name	rna9125
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2115
Alignment location	KK037251.1:391673..392623 -

Link to JBrowse

Properties


Property Name	Value
Product	40s ribosomal protein
Orig transcript id	gnl\|cribi\|Naga_100012g76.1910.mrna
Orig protein id	gnl\|cribi\|Naga_100012g76.1910
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:391673..392623 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g76	gene8848	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9125	rna9125-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21578.1	cds9095	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:391673..392623-
coding sequence from alignment at KK037251.1:391673..392623-

mRNA sequence

>rna9125 ID=rna9125|Name=rna9125|organism=Nannochloropsis gaditana|type=mRNA|length=2115bp
CCCGTGCCCACCTGGTCATTGAAGCGCCGCGCTCCCCGTCTCTTTCTGCC
ACCTTGTCATTCCACAATAATGGTATGGAATTCTGGTCACATCAGCAGAC
TCCAGGATTGAGCGGCGGTTGAAAGCAGCCATTTGATGGTCTAAGTAAAG
AAGTGACCTGACGAAACTCTTGAGCAGCTTCGGCGGTGGAAAATCATTAC
GCGCGACGTAAAGAGTGGCGACTGAGGACGCAGCGTGCCGTACGCGGGCA
GGACAAAGAAGCATCTGCGCTCTGCGCCTTACTATCACACAATATCTAAT
TATACTGCTGCGCTAGTCTCTACACACATGCGTGTGATATCCCAGAAGCG
TTTTAATAGCGCATATGACACAAGTTGTACATCCATGCATCTTGGAAAGC
AGGAGCCTGAAGAGAGTGAGCCTTCGTCTCATTACTTCGGTCCTGGACGA
GCGAACTCTTGTGCACCATGCGGCGTAGGGACATTGAGTGATGTCAATGG
ACTTCGTATCGAGAAAAATATTGAAGAGCAGGGGAGCGGAAACATTGCAG
CTCGCTGCGACTGTGGTCAACATACGTTTCTGGTGCTTGCTTCAGACAGC
GGTGGAGACACTGCACCCACCACGCCCGACTCAAGCGGTGCCATTCGCAC
CAGTCACAGTGAGACGTCTATCACAGAGAGCTTAGGAGGAAACGTCGTGG
AGGGAAAGCTTACGGATGGCAGAAGGCGTCACTGGGAGAATCAATCCGGT
GCTGACCTGTCATCATCCCTGCCAACGCACTCGCGTCTGATCAAAGAGGA
CGATCCTGCGGACATTGAAATACTGAGTGCCACGATGGTGCAAGCAATGG
TATGCAAGGGTAGCACAGAGGGAAGGGTCAATGGCAACAGGCGTCAGAGC
CACAGGCATTCTCTAGATAGTTCGGAGGGCCCCGTCAAAGCTCTTTCTCC
GCGACCGTCTGTCTGTCCAGCGTCCGCAAGACCTCAAGACCATTATCGCT
CCCACCAGCCACAGCAGCAACATCAGCGCCGTCGACTATCTGTTTCAGGA
GCGGACGGAGGTGACCTTGGGACCAGTATCGGGAGCAGCACCGTGTTGGA
CGGAAGTATGGAGGATCCGAGCGCGCTTTCCCTGGACCGCATCGTGGTGG
AGGGAAACGGGGACATGGTAGTCATTCAGCCCTCTGTGGTGTGCGACGCT
TGCCCCTCATGTGACGACGTCTGCACGCTTCAGGATTGCCGCGGCTGTCA
AAAGAAACGTGAGCGCCTTTTGGCGAGTGGGATAATGGTGGTCCAGGAGG
CCTGGGGCAGGACCACTCGAAAGAGACCTTTGCAGGAGAACTCTTTGTCG
GGGGGCGCGTGTGTGCCGATCATGGCCAAGCCACACGGCAGCGCGAAGGG
TGATGGTTGTCAAAATGTGTCGTACTCTCTCTGTGAGATACGGCGGCACA
GAACCCTTGCCTCCTGTTGGCTGGTGGCCAAGGGGCAGGTGTACGACGTG
ACCAACTACCTCTCAAGCCACCCAGCGGGCGCCATAGCGATGGCCCGTAA
GGCCGGAGGGCAAGATTGCACAGAGGATTTTGAATTTCACTCGGCAAAGG
CACAAAAGCTATGGAAAAATCTAAAAATCGGGTCTGTTCGTCCATGCCCT
GGCGATAGACAGAGTAGAAGAAGTAGAGGGGGGGATGATAGAAGTAGTAG
ATCCGGGTCTGACTTGGGTTCCTTGGTAGGATCGTCCTGTAGTATCATGT
AGAGACCTGGGCGCACAGGCCTGGCCATTTGCAGTGGGCAGGGTGACTAA
GAGGATTGGAAGGCTTTCCAACACCGTGAAGGTATCTATGTCGGGTGGGC
GGTCCTTGGATTTGTGACTGTACCCATCACAGAACAGCCGAACATCTACA
ATTTTCCGTTGAATTGTGCGCGTGCGAAGAAGAAAAAGACGACACGAAAG
AATATTTGACACGAAAACACACTCAATATATGACTATGCATTGCTATCGC
ATCCGCACACCTGAACAAGGGCGTTGGAAAATCGGGTCGATCGCAAACGT
TCGCTTAACTTCAGAGCAAAACGTGAACAACCACGAGCAAAGAACGTTCA
ATTATACCCTCGCAA

protein sequence of rna9125

>rna9125-protein ID=rna9125-protein|Name=rna9125|organism=Nannochloropsis gaditana|type=polypeptide|length=167bp
MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIA
GFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQD
LRDLMEHIVSRGEETSCEDRGRHEQYETREDEEDGSVSERWTLSVPLRKE
VFELLCQHAYSQKASKK

mRNA from alignment at KK037251.1:391673..392623-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9125 ID=rna9125|Name=rna9125|organism=Nannochloropsis gaditana|type=mRNA|length=951bp|location=Sequence derived from alignment at KK037251.1:391673..392623- (Nannochloropsis gaditana)
ATGGTACGTTTCTGTGGGTGCTTATCCAGTGGTTGGCAGGGCGAGCGCAT
TTTCTTCCCTTCGTAGTCTGCTCATGACGACCTTCTGTGTTCGCTTTTGT
ACAACAATTTCACGATCAAGAACATGTTTATCAAGTCACAAGCATGTCAC
TGTCCTCCTTTCTTACTGTTGTAGTCCGAAGCATTTTTCTCGCCCTCTAT
CCTGTTCACATATTTCAAGAAAGAGGTCACCAGATGTCAGTGAACTGTGT
TGGCCTTTCTAACAGTATAAGTGCGGGGCTTTCTCTATTCTATGATATCT
TCAGGGTGTGCGTACCAAGACCGTAAAGAAATCAGCACGAGTGATAATCG
AGAAATACTACTCGCGCCTGACCATGGATTTTCACACCAACAAACGTGTT
GTCGACGAGGTAGCCGAGGTCCCGTCGAAGCGCATGCGCAACAAAATCGC
TGGCTTTGTCACGCACTTGATGAAGCGTATTCAGAAGGGGCCAGTCCGAG
GAATTTCCTTGAAACTGCAGGAGGAGGAGCGTGAGCGCCGCCTGGACTTC
GTGCCAGAAGTGTCATTGATCGAGCAAGAGCAACCAGAAGTGGATCAGGA
CCTGCGAGACTTGATGGAGCATATTGGTTTCAAGGAAATTCTTGGAAACT
GAGGCTCCTATGTACGAGGAAGTGAGTAGGGGGGAGGAGACGAGCTGCGA
GGTGGCGACAGGATAGGCGTGGCCCAATACACCTGATCCAAGATTGGACT
GTAGGACAGGGGCCGCCACGAGCAGTACGAGACTCGAGAGGATGAGGAGG
ACGGAAGCGTGTCAGAGCGTTGGACCTTGAGCGTACCCTTGAGGAAGGAG
GTCTTTGGTCACTTGCAGAAAACTGACTGACTGCCTGCCGCGTCTATTCT
GTAGAGCTCCTGTGTCAGCACGCATATTCCCAGAAGGCCTCAAAAAAATA
A

Coding sequence (CDS) from alignment at KK037251.1:391673..392623-

>rna9125 ID=rna9125|Name=rna9125|organism=Nannochloropsis gaditana|type=CDS|length=2520bp|location=Sequence derived from alignment at KK037251.1:391673..392623- (Nannochloropsis gaditana)
AGCTCCTGTGTCAGCACGCATATTCCCAGAAGGCCTCAAAAAAATAAGAC
AGGGGCCGCCACGAGCAGTACGAGACTCGAGAGGATGAGGAGGACGGAAG
CGTGTCAGAGCGTTGGACCTTGAGCGTACCCTTGAGGAAGGAGGTCTTTG
TGAGTAGGGGGGAGGAGACGAGCTGCGAGGGTGTGCGTACCAAGACCGTA
AAGAAATCAGCACGAGTGATAATCGAGAAATACTACTCGCGCCTGACCAT
GGATTTTCACACCAACAAACGTGTTGTCGACGAGGTAGCCGAGGTCCCGT
CGAAGCGCATGCGCAACAAAATCGCTGGCTTTGTCACGCACTTGATGAAG
CGTATTCAGAAGGGGCCAGTCCGAGGAATTTCCTTGAAACTGCAGGAGGA
GGAGCGTGAGCGCCGCCTGGACTTCGTGCCAGAAGTGTCATTGATCGAGC
AAGAGCAACCAGAAGTGGATCAGGACCTGCGAGACTTGATGGAGCATATT
GATGAGCTCCTGTGTCAGCACGCATATTCCCAGAAGGCCTCAAAAAAATA
AGACAGGGGCCGCCACGAGCAGTACGAGACTCGAGAGGATGAGGAGGACG
GAAGCGTGTCAGAGCGTTGGACCTTGAGCGTACCCTTGAGGAAGGAGGTC
TTTGTGAGTAGGGGGGAGGAGACGAGCTGCGAGGGTGTGCGTACCAAGAC
CGTAAAGAAATCAGCACGAGTGATAATCGAGAAATACTACTCGCGCCTGA
CCATGGATTTTCACACCAACAAACGTGTTGTCGACGAGGTAGCCGAGGTC
CCGTCGAAGCGCATGCGCAACAAAATCGCTGGCTTTGTCACGCACTTGAT
GAAGCGTATTCAGAAGGGGCCAGTCCGAGGAATTTCCTTGAAACTGCAGG
AGGAGGAGCGTGAGCGCCGCCTGGACTTCGTGCCAGAAGTGTCATTGATC
GAGCAAGAGCAACCAGAAGTGGATCAGGACCTGCGAGACTTGATGGAGCA
TATTGATGAGCTCCTGTGTCAGCACGCATATTCCCAGAAGGCCTCAAAAA
AATAAGACAGGGGCCGCCACGAGCAGTACGAGACTCGAGAGGATGAGGAG
GACGGAAGCGTGTCAGAGCGTTGGACCTTGAGCGTACCCTTGAGGAAGGA
GGTCTTTGTGAGTAGGGGGGAGGAGACGAGCTGCGAGGGTGTGCGTACCA
AGACCGTAAAGAAATCAGCACGAGTGATAATCGAGAAATACTACTCGCGC
CTGACCATGGATTTTCACACCAACAAACGTGTTGTCGACGAGGTAGCCGA
GGTCCCGTCGAAGCGCATGCGCAACAAAATCGCTGGCTTTGTCACGCACT
TGATGAAGCGTATTCAGAAGGGGCCAGTCCGAGGAATTTCCTTGAAACTG
CAGGAGGAGGAGCGTGAGCGCCGCCTGGACTTCGTGCCAGAAGTGTCATT
GATCGAGCAAGAGCAACCAGAAGTGGATCAGGACCTGCGAGACTTGATGG
AGCATATTGATGAGCTCCTGTGTCAGCACGCATATTCCCAGAAGGCCTCA
AAAAAATAAGACAGGGGCCGCCACGAGCAGTACGAGACTCGAGAGGATGA
GGAGGACGGAAGCGTGTCAGAGCGTTGGACCTTGAGCGTACCCTTGAGGA
AGGAGGTCTTTGTGAGTAGGGGGGAGGAGACGAGCTGCGAGGGTGTGCGT
ACCAAGACCGTAAAGAAATCAGCACGAGTGATAATCGAGAAATACTACTC
GCGCCTGACCATGGATTTTCACACCAACAAACGTGTTGTCGACGAGGTAG
CCGAGGTCCCGTCGAAGCGCATGCGCAACAAAATCGCTGGCTTTGTCACG
CACTTGATGAAGCGTATTCAGAAGGGGCCAGTCCGAGGAATTTCCTTGAA
ACTGCAGGAGGAGGAGCGTGAGCGCCGCCTGGACTTCGTGCCAGAAGTGT
CATTGATCGAGCAAGAGCAACCAGAAGTGGATCAGGACCTGCGAGACTTG
ATGGAGCATATTGATGAGCTCCTGTGTCAGCACGCATATTCCCAGAAGGC
CTCAAAAAAATAAGACAGGGGCCGCCACGAGCAGTACGAGACTCGAGAGG
ATGAGGAGGACGGAAGCGTGTCAGAGCGTTGGACCTTGAGCGTACCCTTG
AGGAAGGAGGTCTTTGTGAGTAGGGGGGAGGAGACGAGCTGCGAGGGTGT
GCGTACCAAGACCGTAAAGAAATCAGCACGAGTGATAATCGAGAAATACT
ACTCGCGCCTGACCATGGATTTTCACACCAACAAACGTGTTGTCGACGAG
GTAGCCGAGGTCCCGTCGAAGCGCATGCGCAACAAAATCGCTGGCTTTGT
CACGCACTTGATGAAGCGTATTCAGAAGGGGCCAGTCCGAGGAATTTCCT
TGAAACTGCAGGAGGAGGAGCGTGAGCGCCGCCTGGACTTCGTGCCAGAA
GTGTCATTGATCGAGCAAGAGCAACCAGAAGTGGATCAGGACCTGCGAGA
CTTGATGGAGCATATTGATG

Synonyms

Publications