EWM21578.1, cds9095 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21578.1 vs. NCBI_GenBank
Match: gi|585101833|gb|EWM21578.1| (40s ribosomal protein [Nannochloropsis gaditana]) HSP 1 Score: 340.502 bits (872), Expect = 1.773e-118 Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0
Query: 1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHIVSRGEETSCEDRGRHEQYETREDEEDGSVSERWTLSVPLRKEVFELLCQHAYSQKASKK 167
MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHIVSRGEETSCEDRGRHEQYETREDEEDGSVSERWTLSVPLRKEVFELLCQHAYSQKASKK
Sbjct: 1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHIVSRGEETSCEDRGRHEQYETREDEEDGSVSERWTLSVPLRKEVFELLCQHAYSQKASKK 167
BLAST of EWM21578.1 vs. NCBI_GenBank
Match: gi|298711489|emb|CBJ26577.1| (40S ribosomal protein S17 [Ectocarpus siliculosus]) HSP 1 Score: 188.348 bits (477), Expect = 7.298e-59 Identity = 90/108 (83.33%), Postives = 99/108 (91.67%), Query Frame = 0
Query: 1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 108
MGVRTKTVKKSAR IIEKYYSRLTMDFHTNKRV DEVA +PSKRMRNKIAGFVTHLMKRIQ+GPVRGISLKLQEEERERR+DFVPEVS IEQE ++D D +DL++ +
Sbjct: 1 MGVRTKTVKKSARAIIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAIEQESIDIDPDTKDLLDAL 108
BLAST of EWM21578.1 vs. NCBI_GenBank
Match: gi|219116332|ref|XP_002178961.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409728|gb|EEC49659.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 179.874 bits (455), Expect = 1.520e-55 Identity = 84/108 (77.78%), Postives = 97/108 (89.81%), Query Frame = 0
Query: 1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 108
MGVRTKTVKKSAR I+EKYY RLT+DFHTNKR++D+VA +PSKRMRNKIAG+ THLM+RI KGPVRGISLKLQEEERERRLDFVPEVS +EQE ++D D RDL+E +
Sbjct: 1 MGVRTKTVKKSARTIVEKYYPRLTVDFHTNKRIIDDVAILPSKRMRNKIAGYTTHLMRRIAKGPVRGISLKLQEEERERRLDFVPEVSALEQETIQIDPDTRDLLESL 108
BLAST of EWM21578.1 vs. NCBI_GenBank
Match: gi|1072224782|gb|OEU09531.1| (ribosomal protein S17 component of cytosolic 80S ribosome and 40S small subunit [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 177.948 bits (450), Expect = 9.988e-55 Identity = 83/108 (76.85%), Postives = 95/108 (87.96%), Query Frame = 0
Query: 1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 108
MGVRTKTVKKSAR I+E YY RLT+DFHTNKR+VDEVA +PSKRMRNKIAG+ THLM+RI KGPVRGISLKLQEEERERRLDFVPEVS +EQ+ +D D RD++E +
Sbjct: 1 MGVRTKTVKKSARTIVENYYPRLTLDFHTNKRIVDEVAILPSKRMRNKIAGYTTHLMRRIAKGPVRGISLKLQEEERERRLDFVPEVSALEQDTITIDPDTRDMLESL 108
BLAST of EWM21578.1 vs. NCBI_GenBank
Match: gi|1210529827|dbj|GAX11360.1| (small subunit ribosomal protein S17e [Fistulifera solaris]) HSP 1 Score: 177.563 bits (449), Expect = 1.128e-54 Identity = 82/108 (75.93%), Postives = 97/108 (89.81%), Query Frame = 0
Query: 1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 108
MGVRTKTVK+SAR I+EKYY+RLT+DFH+NKRVVD+VA +PSKRMRNKIAG+ THLM+RI KGPVRGISLKLQEEERERRLDFVPEVS +E E ++D D RD++E +
Sbjct: 1 MGVRTKTVKRSARTIVEKYYTRLTLDFHSNKRVVDDVAILPSKRMRNKIAGYTTHLMRRIAKGPVRGISLKLQEEERERRLDFVPEVSALEAETIQIDPDTRDMLESL 108
BLAST of EWM21578.1 vs. NCBI_GenBank
Match: gi|676385347|ref|XP_009035952.1| (hypothetical protein AURANDRAFT_36910 [Aureococcus anophagefferens] >gi|323454055|gb|EGB09926.1| hypothetical protein AURANDRAFT_36910 [Aureococcus anophagefferens]) HSP 1 Score: 177.563 bits (449), Expect = 1.233e-54 Identity = 84/108 (77.78%), Postives = 99/108 (91.67%), Query Frame = 0
Query: 1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 108
MGVRTKTVK+SAR+I+EKYYSRL +DFHTNKRV DEVA VPSKRMRNKIAGFVTHLMKRIQ+GPVRGISLKLQEEERERR+DFVPEVS I+Q+ E+D D +++++ +
Sbjct: 1 MGVRTKTVKRSARLIVEKYYSRLGVDFHTNKRVCDEVAVVPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAIDQDFVEIDPDTKEMLDAL 108
BLAST of EWM21578.1 vs. NCBI_GenBank
Match: gi|1210520706|dbj|GAX20462.1| (small subunit ribosomal protein S17e [Fistulifera solaris]) HSP 1 Score: 177.178 bits (448), Expect = 1.618e-54 Identity = 81/108 (75.00%), Postives = 97/108 (89.81%), Query Frame = 0
Query: 1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 108
MGVRTKTVK+SAR I+EKYY+RLT+DFH+NKR+VD+VA +PSKRMRNKIAG+ THLM+RI KGPVRGISLKLQEEERERRLDFVPEVS +E E ++D D RD++E +
Sbjct: 1 MGVRTKTVKRSARTIVEKYYTRLTLDFHSNKRIVDDVAILPSKRMRNKIAGYTTHLMRRIAKGPVRGISLKLQEEERERRLDFVPEVSALEAETIQIDPDTRDMLESL 108
BLAST of EWM21578.1 vs. NCBI_GenBank
Match: gi|1173936849|gb|OQR87726.1| (40S ribosomal protein S17 [Achlya hypogyna]) HSP 1 Score: 177.563 bits (449), Expect = 2.341e-54 Identity = 85/108 (78.70%), Postives = 96/108 (88.89%), Query Frame = 0
Query: 1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 108
MGVRTKTVK+SA IIEKYYSRLT+DF +NKRV DEVA +PSKRMRNKIAG++THLMKRIQ+GPVRGISLKLQEEERERRLDFVPEVS I+ E E+D D RDL+ H+
Sbjct: 1 MGVRTKTVKRSAVQIIEKYYSRLTLDFDSNKRVCDEVAIIPSKRMRNKIAGYITHLMKRIQRGPVRGISLKLQEEERERRLDFVPEVSAIDVENIEIDNDTRDLLAHL 108
BLAST of EWM21578.1 vs. NCBI_GenBank
Match: gi|669169199|ref|XP_008619948.1| (40S ribosomal protein [Saprolegnia diclina VS20] >gi|813157997|ref|XP_012202347.1| 40S ribosomal protein [Saprolegnia parasitica CBS 223.65] >gi|530728368|gb|EQC26610.1| 40S ribosomal protein [Saprolegnia diclina VS20] >gi|641532959|gb|KDO26966.1| 40S ribosomal protein [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 176.022 bits (445), Expect = 5.893e-54 Identity = 84/108 (77.78%), Postives = 95/108 (87.96%), Query Frame = 0
Query: 1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 108
MGVRTKTVK+SA IIEKYYSRLT+DF +NKRV DEVA +PSKRMRNKIAG++THLMKRIQ+GPVRGISLKLQEEERERRLDFVPEVS I + E+D D RDL+ H+
Sbjct: 1 MGVRTKTVKRSAVQIIEKYYSRLTLDFDSNKRVCDEVAIIPSKRMRNKIAGYITHLMKRIQRGPVRGISLKLQEEERERRLDFVPEVSAINTDAIEIDNDTRDLLAHL 108
BLAST of EWM21578.1 vs. NCBI_GenBank
Match: gi|224014222|ref|XP_002296774.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220968629|gb|EED86975.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 174.866 bits (442), Expect = 1.667e-53 Identity = 82/106 (77.36%), Postives = 93/106 (87.74%), Query Frame = 0
Query: 3 VRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 108
VRTKTVKKSAR I+EKYY RLT+DFHTNKR++DE+A PSKRMRNKIAGF THLMKRI KGPVR ISLKLQEEERERRLDFVPEVS +EQE +D++ RDL+E +
Sbjct: 1 VRTKTVKKSARTIVEKYYPRLTLDFHTNKRIIDEIAITPSKRMRNKIAGFTTHLMKRIAKGPVRNISLKLQEEERERRLDFVPEVSALEQETIAIDRETRDLLESM 106 The following BLAST results are available for this feature:
BLAST of EWM21578.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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