EWM21578.1, cds9095 (CDS) Nannochloropsis gaditana

Overview
NameEWM21578.1
Unique Namecds9095
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:392621..392623 -
Alignment locationKK037251.1:391998..392319 -
Alignment locationKK037251.1:391923..391951 -
Alignment locationKK037251.1:391767..391869 -
Alignment locationKK037251.1:391673..391719 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21578.1
Product40s ribosomal protein
Orig transcript idgnl|cribi|Naga_100012g76.1910.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:392621..392623 -
KK037251.1supercontigKK037251.1:391998..392319 -
KK037251.1supercontigKK037251.1:391923..391951 -
KK037251.1supercontigKK037251.1:391767..391869 -
KK037251.1supercontigKK037251.1:391673..391719 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR018273Ribosomal_S17e_CS
IPR001210Ribosomal_S17e
Homology
BLAST of EWM21578.1 vs. NCBI_GenBank
Match: gi|585101833|gb|EWM21578.1| (40s ribosomal protein [Nannochloropsis gaditana])

HSP 1 Score: 340.502 bits (872), Expect = 1.773e-118
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0
Query:    1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHIVSRGEETSCEDRGRHEQYETREDEEDGSVSERWTLSVPLRKEVFELLCQHAYSQKASKK 167
            MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHIVSRGEETSCEDRGRHEQYETREDEEDGSVSERWTLSVPLRKEVFELLCQHAYSQKASKK
Sbjct:    1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHIVSRGEETSCEDRGRHEQYETREDEEDGSVSERWTLSVPLRKEVFELLCQHAYSQKASKK 167          
BLAST of EWM21578.1 vs. NCBI_GenBank
Match: gi|298711489|emb|CBJ26577.1| (40S ribosomal protein S17 [Ectocarpus siliculosus])

HSP 1 Score: 188.348 bits (477), Expect = 7.298e-59
Identity = 90/108 (83.33%), Postives = 99/108 (91.67%), Query Frame = 0
Query:    1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 108
            MGVRTKTVKKSAR IIEKYYSRLTMDFHTNKRV DEVA +PSKRMRNKIAGFVTHLMKRIQ+GPVRGISLKLQEEERERR+DFVPEVS IEQE  ++D D +DL++ +
Sbjct:    1 MGVRTKTVKKSARAIIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAIEQESIDIDPDTKDLLDAL 108          
BLAST of EWM21578.1 vs. NCBI_GenBank
Match: gi|219116332|ref|XP_002178961.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409728|gb|EEC49659.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 179.874 bits (455), Expect = 1.520e-55
Identity = 84/108 (77.78%), Postives = 97/108 (89.81%), Query Frame = 0
Query:    1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 108
            MGVRTKTVKKSAR I+EKYY RLT+DFHTNKR++D+VA +PSKRMRNKIAG+ THLM+RI KGPVRGISLKLQEEERERRLDFVPEVS +EQE  ++D D RDL+E +
Sbjct:    1 MGVRTKTVKKSARTIVEKYYPRLTVDFHTNKRIIDDVAILPSKRMRNKIAGYTTHLMRRIAKGPVRGISLKLQEEERERRLDFVPEVSALEQETIQIDPDTRDLLESL 108          
BLAST of EWM21578.1 vs. NCBI_GenBank
Match: gi|1072224782|gb|OEU09531.1| (ribosomal protein S17 component of cytosolic 80S ribosome and 40S small subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 177.948 bits (450), Expect = 9.988e-55
Identity = 83/108 (76.85%), Postives = 95/108 (87.96%), Query Frame = 0
Query:    1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 108
            MGVRTKTVKKSAR I+E YY RLT+DFHTNKR+VDEVA +PSKRMRNKIAG+ THLM+RI KGPVRGISLKLQEEERERRLDFVPEVS +EQ+   +D D RD++E +
Sbjct:    1 MGVRTKTVKKSARTIVENYYPRLTLDFHTNKRIVDEVAILPSKRMRNKIAGYTTHLMRRIAKGPVRGISLKLQEEERERRLDFVPEVSALEQDTITIDPDTRDMLESL 108          
BLAST of EWM21578.1 vs. NCBI_GenBank
Match: gi|1210529827|dbj|GAX11360.1| (small subunit ribosomal protein S17e [Fistulifera solaris])

HSP 1 Score: 177.563 bits (449), Expect = 1.128e-54
Identity = 82/108 (75.93%), Postives = 97/108 (89.81%), Query Frame = 0
Query:    1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 108
            MGVRTKTVK+SAR I+EKYY+RLT+DFH+NKRVVD+VA +PSKRMRNKIAG+ THLM+RI KGPVRGISLKLQEEERERRLDFVPEVS +E E  ++D D RD++E +
Sbjct:    1 MGVRTKTVKRSARTIVEKYYTRLTLDFHSNKRVVDDVAILPSKRMRNKIAGYTTHLMRRIAKGPVRGISLKLQEEERERRLDFVPEVSALEAETIQIDPDTRDMLESL 108          
BLAST of EWM21578.1 vs. NCBI_GenBank
Match: gi|676385347|ref|XP_009035952.1| (hypothetical protein AURANDRAFT_36910 [Aureococcus anophagefferens] >gi|323454055|gb|EGB09926.1| hypothetical protein AURANDRAFT_36910 [Aureococcus anophagefferens])

HSP 1 Score: 177.563 bits (449), Expect = 1.233e-54
Identity = 84/108 (77.78%), Postives = 99/108 (91.67%), Query Frame = 0
Query:    1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 108
            MGVRTKTVK+SAR+I+EKYYSRL +DFHTNKRV DEVA VPSKRMRNKIAGFVTHLMKRIQ+GPVRGISLKLQEEERERR+DFVPEVS I+Q+  E+D D +++++ +
Sbjct:    1 MGVRTKTVKRSARLIVEKYYSRLGVDFHTNKRVCDEVAVVPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAIDQDFVEIDPDTKEMLDAL 108          
BLAST of EWM21578.1 vs. NCBI_GenBank
Match: gi|1210520706|dbj|GAX20462.1| (small subunit ribosomal protein S17e [Fistulifera solaris])

HSP 1 Score: 177.178 bits (448), Expect = 1.618e-54
Identity = 81/108 (75.00%), Postives = 97/108 (89.81%), Query Frame = 0
Query:    1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 108
            MGVRTKTVK+SAR I+EKYY+RLT+DFH+NKR+VD+VA +PSKRMRNKIAG+ THLM+RI KGPVRGISLKLQEEERERRLDFVPEVS +E E  ++D D RD++E +
Sbjct:    1 MGVRTKTVKRSARTIVEKYYTRLTLDFHSNKRIVDDVAILPSKRMRNKIAGYTTHLMRRIAKGPVRGISLKLQEEERERRLDFVPEVSALEAETIQIDPDTRDMLESL 108          
BLAST of EWM21578.1 vs. NCBI_GenBank
Match: gi|1173936849|gb|OQR87726.1| (40S ribosomal protein S17 [Achlya hypogyna])

HSP 1 Score: 177.563 bits (449), Expect = 2.341e-54
Identity = 85/108 (78.70%), Postives = 96/108 (88.89%), Query Frame = 0
Query:    1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 108
            MGVRTKTVK+SA  IIEKYYSRLT+DF +NKRV DEVA +PSKRMRNKIAG++THLMKRIQ+GPVRGISLKLQEEERERRLDFVPEVS I+ E  E+D D RDL+ H+
Sbjct:    1 MGVRTKTVKRSAVQIIEKYYSRLTLDFDSNKRVCDEVAIIPSKRMRNKIAGYITHLMKRIQRGPVRGISLKLQEEERERRLDFVPEVSAIDVENIEIDNDTRDLLAHL 108          
BLAST of EWM21578.1 vs. NCBI_GenBank
Match: gi|669169199|ref|XP_008619948.1| (40S ribosomal protein [Saprolegnia diclina VS20] >gi|813157997|ref|XP_012202347.1| 40S ribosomal protein [Saprolegnia parasitica CBS 223.65] >gi|530728368|gb|EQC26610.1| 40S ribosomal protein [Saprolegnia diclina VS20] >gi|641532959|gb|KDO26966.1| 40S ribosomal protein [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 176.022 bits (445), Expect = 5.893e-54
Identity = 84/108 (77.78%), Postives = 95/108 (87.96%), Query Frame = 0
Query:    1 MGVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 108
            MGVRTKTVK+SA  IIEKYYSRLT+DF +NKRV DEVA +PSKRMRNKIAG++THLMKRIQ+GPVRGISLKLQEEERERRLDFVPEVS I  +  E+D D RDL+ H+
Sbjct:    1 MGVRTKTVKRSAVQIIEKYYSRLTLDFDSNKRVCDEVAIIPSKRMRNKIAGYITHLMKRIQRGPVRGISLKLQEEERERRLDFVPEVSAINTDAIEIDNDTRDLLAHL 108          
BLAST of EWM21578.1 vs. NCBI_GenBank
Match: gi|224014222|ref|XP_002296774.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220968629|gb|EED86975.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 174.866 bits (442), Expect = 1.667e-53
Identity = 82/106 (77.36%), Postives = 93/106 (87.74%), Query Frame = 0
Query:    3 VRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVSLIEQEQPEVDQDLRDLMEHI 108
            VRTKTVKKSAR I+EKYY RLT+DFHTNKR++DE+A  PSKRMRNKIAGF THLMKRI KGPVR ISLKLQEEERERRLDFVPEVS +EQE   +D++ RDL+E +
Sbjct:    1 VRTKTVKKSARTIVEKYYPRLTLDFHTNKRIIDEIAITPSKRMRNKIAGFTTHLMKRIAKGPVRNISLKLQEEERERRLDFVPEVSALEQETIAIDRETRDLLESM 106          
The following BLAST results are available for this feature:
BLAST of EWM21578.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101833|gb|EWM21578.1|1.773e-118100.0040s ribosomal protein [Nannochloropsis gaditana][more]
gi|298711489|emb|CBJ26577.1|7.298e-5983.3340S ribosomal protein S17 [Ectocarpus siliculosus][more]
gi|219116332|ref|XP_002178961.1|1.520e-5577.78predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072224782|gb|OEU09531.1|9.988e-5576.85ribosomal protein S17 component of cytosolic 80S r... [more]
gi|1210529827|dbj|GAX11360.1|1.128e-5475.93small subunit ribosomal protein S17e [Fistulifera ... [more]
gi|676385347|ref|XP_009035952.1|1.233e-5477.78hypothetical protein AURANDRAFT_36910 [Aureococcus... [more]
gi|1210520706|dbj|GAX20462.1|1.618e-5475.00small subunit ribosomal protein S17e [Fistulifera ... [more]
gi|1173936849|gb|OQR87726.1|2.341e-5478.7040S ribosomal protein S17 [Achlya hypogyna][more]
gi|669169199|ref|XP_008619948.1|5.893e-5477.7840S ribosomal protein [Saprolegnia diclina VS20] >... [more]
gi|224014222|ref|XP_002296774.1|1.667e-5377.36predicted protein, partial [Thalassiosira pseudona... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9125rna9125Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications