rna9124, rna9124 (mRNA) Nannochloropsis gaditana

Overview
Namerna9124
Unique Namerna9124
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length417
Alignment locationKK037251.1:389435..391671 +

Link to JBrowse

Properties
Property NameValue
Productcytochrome b5
Orig transcript idgnl|cribi|Naga_100012g75.1902.mrna
Orig protein idgnl|cribi|Naga_100012g75.1902
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:389435..391671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100012g75gene8847Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9124rna9124-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21570.1cds9094Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9124 ID=rna9124|Name=rna9124|organism=Nannochloropsis gaditana|type=mRNA|length=417bp
ATGCTGCGACGAAAAAAAGAGCTTGGCCTCACATCAAGGATGCACCAGGC
TTGGCATTTGCCACCAACCTGTCATTGCACGCTTCAAAAAGTACCAGCAA
CGGAGGACAACAAAATATACATGGCGTCCGCTCAAGCAAGATCCTCGAGT
TGCTCACTTTCTAATAGTCCCGCGCAAATTAAGACTTTAATGTCAACCGA
GGTGTCCAGCGAGCAATCGACCGTCCTATCAGAGAGGCCAGGGATAAATA
TCGTATTTAAAGCTCTCAGAGACCATTTGCCCTCCGCTGTTGGCAAGAAC
CCTTCTTTAACTGGCAATGGTAGTGGTCTGCTCCAACGACAGAAGCTGTG
GATCCAGCTCCGCACACAGCGATTGGAAGCAGCTCGTGCTACCAAAGCCC
TTGAAGAGGTCGCGTAG
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protein sequence of rna9124

>rna9124-protein ID=rna9124-protein|Name=rna9124|organism=Nannochloropsis gaditana|type=polypeptide|length=474bp
MRVISQKRFNSAYDTSCTSMHLGKQEPEESEPSSHYFGPGRANSCAPCGV
GTLSDVNGLRIEKNIEEQGSGNIAARCDCGQHTFLVLASDSGGDTAPTTP
DSSGAIRTSHSETSITESLGGNVVEGKLTDGRRRHWENQSGADLSSSLPT
HSRLIKEDDPADIEILSATMVQAMVCKGSTEGRVNGNRRQSHRHSLDSSE
GPVKALSPRPSVCPASARPQDHYRSHQPQQQHQRRRLSVSGADGGDLGTS
IGSSTVLDGSMEDPSALSLDRIVVEGNGDMVVIQPSVVCDACPSCDDVCT
LQDCRGCQKKRERLLASGIMVVQEAWGRTTRKRPLQENSLSGGACVPIMA
KPHGSAKGDGCQNVSYSLCEIRRHRTLASCWLVAKGQVYDVTNYLSSHPA
GAIAMARKAGGQDCTEDFEFHSAKAQKLWKNLKIGSVRPCPGDRQSRRSR
GGDDRSSRSGSDLGSLVGSSCSIM
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mRNA from alignment at KK037251.1:389435..391671+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9124 ID=rna9124|Name=rna9124|organism=Nannochloropsis gaditana|type=mRNA|length=2237bp|location=Sequence derived from alignment at KK037251.1:389435..391671+ (Nannochloropsis gaditana)
CCCGTGCCCACCTGGTCATTGAAGCGCCGCGCTCCCCGTCTCTTTCTGCC
ACCTTGTCATTCCACAATAATGGTATGGAATTCTGGTCACATCAGCAGAC
TCCAGGATTGAGCGGCGGTTGAAAGCAGCCATTTGATGGTCGTTGACAAG
CCTGGAGGGATGTCTCGTGTGGCGTAtctgctctcccttcctttctgcaC
TACGATTTGCTTGGCATTGTTACGCCGTGTAAGCAAATTAATTCTCACAC
CTACTCACAGGTCTAAGTAAAGAAGTGACCTGACGAAACTCTTGAGCAGC
TTCGGCGGTGGAAAATCATTACGCGCGACGTAAAGAGTGGCGACTGAGGA
CGCAGCGTGCCGTACGCGGGCAGGACAAAGAAGCATCTGCGCTCTGCGCC
TTACTATCACACAATATCTAATTATACTGCTGCGCTAGTCTCTACACACA
TGCGTGTGATATCCCAGAAGCGTTTTAATAGCGCATATGACACAAGTTGT
ACATCCATGCATCTTGGAAAGCAGGAGCCTGAAGAGAGTGAGCCTTCGTC
TCATTACTTCGGTCCTGGACGAGCGAACTCTTGTGCACCATGCGGCGTAG
GGACATTGAGTGATGTCAATGGACTTCGTATCGAGAAAAATATTGAAGAG
CAGGGGAGCGGAAACATTGCAGCTCGCTGCGACTGTGGTCAACATACGTT
TCTGGTGCTTGCTTCAGACAGCGGTGGAGACACTGCACCCACCACGCCCG
ACTCAAGCGGTGCCATTCGCACCAGTCACAGTGAGACGTCTATCACAGAG
AGCTTAGGAGGAAACGtcgtggagggaaagcttACGGATGGCAGAAGGCG
TCACTGGGAGAATCAATCCGGTGCTGACCTGTCATCATCCCTGCCAACGC
ACTCGCGTCTGATCAAAGAGGACGATCCTGCGGACATTGAAATACTGAGT
GCCACGATGGTGCAAGCAATGGTATGCAAGGGTAGCACAGAGGGAAGGGT
CAATGGCAACAGGCGTCAGAGCCACAGGCATTCTCTAGATAGTTCGGAGG
GCCCCGTCAAAGCTCTTTCTCCGCGACCGTCTGTCTGTCCAGCGTCCGCA
AGACCTCAAGACCATTATCGCTCCCACCagccacagcagcaacatCAGCG
CCGTCGACTATCTGTTTCAGGAGCGGACGGAGGTGACCTTGGGACCAGTA
TCGGGAGCAGCACCGTGTTGGACGGAAGTATGGAGGATCCGAGCGCGCTT
TCCCTGGACCGcatcgtggtggagggaaacggGGACATGGTAGTCATTCA
GCCCTCTGTGGTGTGCGACGCTTGCCCCTCATGTGACGACGTCTGCACGC
TTCAGGATTGCCGCGGCTGTCAAAAGAAACGTGAGCGCCTTTTGGCGAGT
GGGATAATGGTGGTCCAGGAGGCCTGGGGCAGGACCACTCGAAAGAGACC
TTTGCAGGAGAACTCTTTGTCGGGGGGCGCGTGTGTGCCGATCATGGCCA
AGCCACACGGCAGCGCGAAGGGTGATGGTTGTCAAAATGTGTCGTACTCT
CTCTGTGAGATACGGCGGCACAGAACCCTTGCCTCCTGTTGGCTGGTGGC
CAAGGGGCAGGTGTACGACGTGACCAACTACCTCTCAAGCCACCCAGCGG
GCGCCATAGCGATGGCCCGTAAGGCCGGAGGGCAAGATTGCACAGAGGAT
TTTGAATTTCACTCGGCAAAGGCACAAAAGCTATGGAAAAATCTAAAAAT
CGGGTCTGTTCGTCCATGCCCTGGCGATAGACAGAGTAGAAGAAGTAGAG
GGGGGGATGATAGAAGTAGTAGATCCGGGTCTGACTTGGGTTCCTTGGTA
GGATCGTCCTGTAGTATCATGTAGAGACCTGGGCGCACAGGCCTGGCCAT
TTGCAGTGGGCAGGGTGACTAAGAGGATTGGAAGGCTTTCCAACACCGTG
AAGGTATCTATGTCGGGTGGGCGGTCCTTGGATTTGTGACTGTACCCATC
ACAGAACAGCCGAACATCTACAATTTTCCGTTGAATTGTGCGCgtgcgaa
gaagaaaaagacgacaCGAAAGAATATTTGACACGAAAACACACTCAATA
TATGACTATGCATTGCTATCGCATCCGCACACCTGAACAAGGGCGTTGGA
AAATCGGGTCGATCGCAAACGTTCGCTTAACTTCAGAGCAAAACGTGAAC
AACCACGAGCAAAGAACGTTCAATTATACCCTCGCAA
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Coding sequence (CDS) from alignment at KK037251.1:389435..391671+

>rna9124 ID=rna9124|Name=rna9124|organism=Nannochloropsis gaditana|type=CDS|length=1425bp|location=Sequence derived from alignment at KK037251.1:389435..391671+ (Nannochloropsis gaditana)
ATGCGTGTGATATCCCAGAAGCGTTTTAATAGCGCATATGACACAAGTTG
TACATCCATGCATCTTGGAAAGCAGGAGCCTGAAGAGAGTGAGCCTTCGT
CTCATTACTTCGGTCCTGGACGAGCGAACTCTTGTGCACCATGCGGCGTA
GGGACATTGAGTGATGTCAATGGACTTCGTATCGAGAAAAATATTGAAGA
GCAGGGGAGCGGAAACATTGCAGCTCGCTGCGACTGTGGTCAACATACGT
TTCTGGTGCTTGCTTCAGACAGCGGTGGAGACACTGCACCCACCACGCCC
GACTCAAGCGGTGCCATTCGCACCAGTCACAGTGAGACGTCTATCACAGA
GAGCTTAGGAGGAAACGtcgtggagggaaagcttACGGATGGCAGAAGGC
GTCACTGGGAGAATCAATCCGGTGCTGACCTGTCATCATCCCTGCCAACG
CACTCGCGTCTGATCAAAGAGGACGATCCTGCGGACATTGAAATACTGAG
TGCCACGATGGTGCAAGCAATGGTATGCAAGGGTAGCACAGAGGGAAGGG
TCAATGGCAACAGGCGTCAGAGCCACAGGCATTCTCTAGATAGTTCGGAG
GGCCCCGTCAAAGCTCTTTCTCCGCGACCGTCTGTCTGTCCAGCGTCCGC
AAGACCTCAAGACCATTATCGCTCCCACCagccacagcagcaacatCAGC
GCCGTCGACTATCTGTTTCAGGAGCGGACGGAGGTGACCTTGGGACCAGT
ATCGGGAGCAGCACCGTGTTGGACGGAAGTATGGAGGATCCGAGCGCGCT
TTCCCTGGACCGcatcgtggtggagggaaacggGGACATGGTAGTCATTC
AGCCCTCTGTGGTGTGCGACGCTTGCCCCTCATGTGACGACGTCTGCACG
CTTCAGGATTGCCGCGGCTGTCAAAAGAAACGTGAGCGCCTTTTGGCGAG
TGGGATAATGGTGGTCCAGGAGGCCTGGGGCAGGACCACTCGAAAGAGAC
CTTTGCAGGAGAACTCTTTGTCGGGGGGCGCGTGTGTGCCGATCATGGCC
AAGCCACACGGCAGCGCGAAGGGTGATGGTTGTCAAAATGTGTCGTACTC
TCTCTGTGAGATACGGCGGCACAGAACCCTTGCCTCCTGTTGGCTGGTGG
CCAAGGGGCAGGTGTACGACGTGACCAACTACCTCTCAAGCCACCCAGCG
GGCGCCATAGCGATGGCCCGTAAGGCCGGAGGGCAAGATTGCACAGAGGA
TTTTGAATTTCACTCGGCAAAGGCACAAAAGCTATGGAAAAATCTAAAAA
TCGGGTCTGTTCGTCCATGCCCTGGCGATAGACAGAGTAGAAGAAGTAGA
GGGGGGGATGATAGAAGTAGTAGATCCGGGTCTGACTTGGGTTCCTTGGT
AGGATCGTCCTGTAGTATCATGTAG
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Synonyms
Publications