rna9123, rna9123 (mRNA) Nannochloropsis gaditana

Overview
Namerna9123
Unique Namerna9123
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1179
Alignment locationKK037251.1:387354..387969 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100012g74.1934.mrna
Orig protein idgnl|cribi|Naga_100012g74.1934
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:387354..387969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100012g74gene8846Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9123rna9123-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21602.1cds9093Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9123 ID=rna9123|Name=rna9123|organism=Nannochloropsis gaditana|type=mRNA|length=1179bp
ATGTACAATGGGATCGGTTTGCAGACTGCGAGGGGCTCTGCCACAAGCGG
GTATGTGACAAAAAACCGAGGATATGTACCGCCGCGGCGCGTCCGGCAAG
AAACAGCCTTAGTAAGTGGGCACGGTGGTCCTCAGGATACATTTAAAGCA
GCGGTACTAGCCAAAGCCAACCAAGAAATATTGGAGCACAAGAGAAAACG
TCAGATTGAAGCACAAGTGTACGAAATGGAGGAAAGAATGAGGGATCAAG
GTTACTCAGAGTCAGAAATCAAGGACAAGGCCACGGCTCTTCGAGAGCGA
TTAAAGGGCAACAATTTAGCTTTAGTGGCCGCCAACAAGACTGGGGGTGA
AGGCTCGGAAATGACGGATACACATGAGGTAGCAGCTCGCAAGGCGGAGG
AGATTGAAAGGCTTCGGAACGCGTTTGGCATCGCTCAGGATCACGTGGAA
GGCGAGACTTGGGACCCGGAGGCGCAGAATCGACGGAGGGAGGCTCGGCA
TAGGGAGCGGGAAGAAAAGAGAAAAAAGCGTCAGGTTGAAGAGATTGAAC
GAAAAAAACGTCTGCGACGATTTGAAGGGGATACGATCCAGGGAAAGGAG
AGGCGGCAAGCCGAAGAGCGACGGGAAATGAAGGGAGGACGAAATGCTGC
GTCGGATGAGGAGGATGATCGGTGGCGACCGAGTGCAGATGAGCCGGATG
ATGTTCGCGGTGGACTGGCTCGCCCTCACCAGGACAAGGAGGATATGAGG
ACAAGAGAGCGGGCGGACTATCGCGCACAGGATGGCCAAAGGCTAAAACG
GACCCGCAGCGGAAGTCGCGATGGAGGAATGTCTAGGATTGGCCAGAAAG
GCATGAAAAATCGTGACGCTGATGAGGGCCAAGATTCTAGAATGCAGAGA
CGCGGCGACTCAGGGGACGCGAGAGGATATCGAGGACGAATAGCGCGTGA
GGGTAGCAGAAACCACAGGCGTGGGATGGAGGACGATGAAGAGAAAGGCA
GGCGGCGCGGCAGTGCGAGGCCGCGGCATTCGCGGAGTGTCAGCAAGGAC
TCGACGTCTTTAGCGTCTTCTCGTTCCAGTTCATCCAGCAGCTCATCCGC
GTCCTCCTCCACGTCCTCGTCGTCTTCGTCTTCATCTATGTCCAGCTCTT
CCTCTTCTAGGTCCTCAGATTCGGACTGA
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protein sequence of rna9123

>rna9123-protein ID=rna9123-protein|Name=rna9123|organism=Nannochloropsis gaditana|type=polypeptide|length=138bp
MLRRKKELGLTSRMHQAWHLPPTCHCTLQKVPATEDNKIYMASAQARSSS
CSLSNSPAQIKTLMSTEVSSEQSTVLSERPGINIVFKALRDHLPSAVGKN
PSLTGNGSGLLQRQKLWIQLRTQRLEAARATKALEEVA
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mRNA from alignment at KK037251.1:387354..387969+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9123 ID=rna9123|Name=rna9123|organism=Nannochloropsis gaditana|type=mRNA|length=616bp|location=Sequence derived from alignment at KK037251.1:387354..387969+ (Nannochloropsis gaditana)
ATGCTGCGACGAAAAAAAGAGCTTGGTAAATCATGCCCTCATCCATGCCC
TCAGGAGGATGCCCAAATTTGGGGGTTGCTCCTATACTTACATTTGTTGC
ATAATTGACTCAGTGCTTCAAACCTCTCCTTTTTCAGGCCTCACATCAAG
GATGCACCAGGCTTGGCATTTGCCACCAACCTGTCATTGCACGCTTCAAA
AAGTACCAGCAACGGAGGACAACAAAATATACATGGCGTCCGCTCAAGCA
AGATCCTCGAGTTGCTCACTTTCTAATAGTCCCGCGCAAATTAAGACTTT
AATGTCAACCGAGGTGTCCAGCGAGCAATCGACCGTCCTATCAGAGAGGC
CAGGGATAAATATCGTATTTAAAGCTCTCAGAGACCATTTGCCCTCCGCT
GTTGGCAAGAACCCTTCTTTAACTGGCAATGGTAGTGGTCTGCTCCAACG
ACAGAAGCTGTGGATCCAGCTCCGCACACAGCGATTGGAAGCAGCTCGTG
CTACCAAAGCCCTTGAAGAGGTCGCGGTGCGTACACGTACATAGACAGTG
CTTGAAAACTCAACAAGTTGATTTGTTAGCCATTCTTTTCTTGCAATACA
CTATATCACGAAGTAG
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Coding sequence (CDS) from alignment at KK037251.1:387354..387969+

>rna9123 ID=rna9123|Name=rna9123|organism=Nannochloropsis gaditana|type=CDS|length=1251bp|location=Sequence derived from alignment at KK037251.1:387354..387969+ (Nannochloropsis gaditana)
ATGCTGCGACGAAAAAAAGAGCTTGGCCTCACATCAAGGATGCACCAGGC
TTGGCATTTGCCACCAACCTGTCATTGCACGCTTCAAAAAGTACCAGCAA
CGGAGGACAACAAAATATACATGGCGTCCGCTCAAGCAAGATCCTCGAGT
TGCTCACTTTCTAATAGTCCCGCGCAAATTAAGACTTTAATGTCAACCGA
GGTGTCCAGCGAGCAATCGACCGTCCTATCAGAGAGGCCAGGGATAAATA
TCGTATTTAAAGCTCTCAGAGACCATTTGCCCTCCGCTGTTGGCAAGAAC
CCTTCTTTAACTGGCAATGGTAGTGGTCTGCTCCAACGACAGAAGCTGTG
GATCCAGCTCCGCACACAGCGATTGGAAGCAGCTCGTGCTACCAAAGCCC
TTGAAGAGGTCGCGTAGATGCTGCGACGAAAAAAAGAGCTTGGCCTCACA
TCAAGGATGCACCAGGCTTGGCATTTGCCACCAACCTGTCATTGCACGCT
TCAAAAAGTACCAGCAACGGAGGACAACAAAATATACATGGCGTCCGCTC
AAGCAAGATCCTCGAGTTGCTCACTTTCTAATAGTCCCGCGCAAATTAAG
ACTTTAATGTCAACCGAGGTGTCCAGCGAGCAATCGACCGTCCTATCAGA
GAGGCCAGGGATAAATATCGTATTTAAAGCTCTCAGAGACCATTTGCCCT
CCGCTGTTGGCAAGAACCCTTCTTTAACTGGCAATGGTAGTGGTCTGCTC
CAACGACAGAAGCTGTGGATCCAGCTCCGCACACAGCGATTGGAAGCAGC
TCGTGCTACCAAAGCCCTTGAAGAGGTCGCGTAGATGCTGCGACGAAAAA
AAGAGCTTGGCCTCACATCAAGGATGCACCAGGCTTGGCATTTGCCACCA
ACCTGTCATTGCACGCTTCAAAAAGTACCAGCAACGGAGGACAACAAAAT
ATACATGGCGTCCGCTCAAGCAAGATCCTCGAGTTGCTCACTTTCTAATA
GTCCCGCGCAAATTAAGACTTTAATGTCAACCGAGGTGTCCAGCGAGCAA
TCGACCGTCCTATCAGAGAGGCCAGGGATAAATATCGTATTTAAAGCTCT
CAGAGACCATTTGCCCTCCGCTGTTGGCAAGAACCCTTCTTTAACTGGCA
ATGGTAGTGGTCTGCTCCAACGACAGAAGCTGTGGATCCAGCTCCGCACA
CAGCGATTGGAAGCAGCTCGTGCTACCAAAGCCCTTGAAGAGGTCGCGTA
G
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Synonyms
Publications