rna9122, rna9122 (mRNA) Nannochloropsis gaditana

Overview
Namerna9122
Unique Namerna9122
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length435
Alignment locationKK037251.1:385407..386585 -

Link to JBrowse

Properties
Property NameValue
ProductmRNA splicing factor, Cwf21
Orig transcript idgnl|cribi|Naga_100012g73.1975.mrna
Orig protein idgnl|cribi|Naga_100012g73.1975
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:385407..386585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100012g73gene8845Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21643.1cds9092Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9122rna9122-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9122 ID=rna9122|Name=rna9122|organism=Nannochloropsis gaditana|type=mRNA|length=435bp
ATGGACCGGGTTGCGTATCCTACTAGTGAGACGAGGATTGCTAAAAAAAA
CAGTATCCTGAAAAGCCACGCTCAAAGCCTAGGCCTTTTTCACGATGCTT
TCCAAGCTAATATCTCGTATGCGAAGTCAGTATTTGAGTGTGGTGACGTT
TCGGCATCCATGAGATGCCACGGTTGCATATACGCGGCCCAGCACGCTAT
TAGAAGCAGACTGTGTACCCCACGAACTACAGCGCAGAAGCTGTGGGCGA
CGTATGTCACCCAGCTGGGCGTAGGGCATTTGAACATATTGACCATGTCA
AGAGTACCTGGAGGTTCAGGCACGATAGGAGCTACAACCGAAAATGCGTC
CCGCAATTTTGGTTGTGTACACGTGTACGACTTAACACGGAAAGGGCTTT
TCAAAGAAGTGGGCGTAACAAAATATAAATTCTGA
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protein sequence of rna9122

>rna9122-protein ID=rna9122-protein|Name=rna9122|organism=Nannochloropsis gaditana|type=polypeptide|length=392bp
MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDTFKA
AVLAKANQEILEHKRKRQIEAQVYEMEERMRDQGYSESEIKDKATALRER
LKGNNLALVAANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVE
GETWDPEAQNRRREARHREREEKRKKRQVEEIERKKRLRRFEGDTIQGKE
RRQAEERREMKGGRNAASDEEDDRWRPSADEPDDVRGGLARPHQDKEDMR
TRERADYRAQDGQRLKRTRSGSRDGGMSRIGQKGMKNRDADEGQDSRMQR
RGDSGDARGYRGRIAREGSRNHRRGMEDDEEKGRRRGSARPRHSRSVSKD
STSLASSRSSSSSSSSASSSTSSSSSSSSMSSSSSSRSSDSD
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mRNA from alignment at KK037251.1:385407..386585-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9122 ID=rna9122|Name=rna9122|organism=Nannochloropsis gaditana|type=mRNA|length=1179bp|location=Sequence derived from alignment at KK037251.1:385407..386585- (Nannochloropsis gaditana)
ATGTACAATGGGATCGGTTTGCAGACTGCGAGGGGCTCTGCCACAAGCGG
GTATGTGACAAAAAACCGAGGATATGTACCGCCGCGGCGCGTCCGGCAAG
AAACAGCCTTAGTAAGTGGGCACGGTGGTCCTCAGGATACATTTAAAGCA
GCGGTACTAGCCAAAGCCAACCAAGAAATATTGGAGCACAAGAGAAAACG
TCAGATTGAAGCACAAGTGTACGAAATGGAGGAAAGAATGAGGGATCAAG
GTTACTCAGAGTCAGAAATCAAGGACAAGGCCACGGCTCTTCGAGAGCGA
TTAAAGGGCAACAATTTAGCTTTAGTGGCCGCCAACAAGACTGGGGGTGA
AGGCTCGGAAATGACGGATACACATGAGGTAGCAGCTCGCAAGGCGGAGG
AGATTGAAAGGCTTCGGAACGCGTTTGGCATCGCTCAGGATCACGTGGAA
GGCGAGACTTGGGACCCGGAGGCGCAGAATCGACGGAGGGAGGCTCGGCA
TAGGGAGCGGGAAGAAAAGAGAAAAAAGCGTCAGGTTGAAGAGATTGAAC
GAAAAAAACGTCTGCGACGATTTGAAGGGGATACGATCCAGGGAAAGGAG
AGGCGGCAAGCCGAAGAGCGACGGGAAATGAAGGGAGGACGAAATGCTGC
GTCGGATGAGGAGGATGATCGGTGGCGACCGAGTGCAGATGAGCCGGATG
ATGTTCGCGGTGGACTGGCTCGCCCTCACCAGGACAAGGAGGATATGAGG
ACAAGAGAGCGGGCGGACTATCGCGCACAGGATGGCCAAAGGCTAAAACG
GACCCGCAGCGGAAGTCGCGATGGAGGAATGTCTAGGATTGGCCAGAAAG
GCATGAAAAATCGTGACGCTGATGAGGGCCAAGATTCTAGAATGCAGAGA
CGCGGCGACTCAGGGGACGCGAGAGGATATCGAGGACGAATAGCGCGTGA
GGGTAGCAGAAACCACAGGCGTGGGATGGAGGACGATGAAGAGAAAGGCA
GGCGGCGCGGCAGTGCGAGGCCGCGGCATTCGCGGAGTGTCAGCAAGGAC
TCGACGTCTTTAGCGTCTTCTCGTTCCAGTTCATCCAGCAGCTCATCCGC
GTCCTCCTCCACGTCCTCGTCGTCTTCGTCTTCATCTATGTCCAGCTCTT
CCTCTTCTAGGTCCTCAGATTCGGACTGA
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Coding sequence (CDS) from alignment at KK037251.1:385407..386585-

>rna9122 ID=rna9122|Name=rna9122|organism=Nannochloropsis gaditana|type=CDS|length=1179bp|location=Sequence derived from alignment at KK037251.1:385407..386585- (Nannochloropsis gaditana)
ATGTACAATGGGATCGGTTTGCAGACTGCGAGGGGCTCTGCCACAAGCGG
GTATGTGACAAAAAACCGAGGATATGTACCGCCGCGGCGCGTCCGGCAAG
AAACAGCCTTAGTAAGTGGGCACGGTGGTCCTCAGGATACATTTAAAGCA
GCGGTACTAGCCAAAGCCAACCAAGAAATATTGGAGCACAAGAGAAAACG
TCAGATTGAAGCACAAGTGTACGAAATGGAGGAAAGAATGAGGGATCAAG
GTTACTCAGAGTCAGAAATCAAGGACAAGGCCACGGCTCTTCGAGAGCGA
TTAAAGGGCAACAATTTAGCTTTAGTGGCCGCCAACAAGACTGGGGGTGA
AGGCTCGGAAATGACGGATACACATGAGGTAGCAGCTCGCAAGGCGGAGG
AGATTGAAAGGCTTCGGAACGCGTTTGGCATCGCTCAGGATCACGTGGAA
GGCGAGACTTGGGACCCGGAGGCGCAGAATCGACGGAGGGAGGCTCGGCA
TAGGGAGCGGGAAGAAAAGAGAAAAAAGCGTCAGGTTGAAGAGATTGAAC
GAAAAAAACGTCTGCGACGATTTGAAGGGGATACGATCCAGGGAAAGGAG
AGGCGGCAAGCCGAAGAGCGACGGGAAATGAAGGGAGGACGAAATGCTGC
GTCGGATGAGGAGGATGATCGGTGGCGACCGAGTGCAGATGAGCCGGATG
ATGTTCGCGGTGGACTGGCTCGCCCTCACCAGGACAAGGAGGATATGAGG
ACAAGAGAGCGGGCGGACTATCGCGCACAGGATGGCCAAAGGCTAAAACG
GACCCGCAGCGGAAGTCGCGATGGAGGAATGTCTAGGATTGGCCAGAAAG
GCATGAAAAATCGTGACGCTGATGAGGGCCAAGATTCTAGAATGCAGAGA
CGCGGCGACTCAGGGGACGCGAGAGGATATCGAGGACGAATAGCGCGTGA
GGGTAGCAGAAACCACAGGCGTGGGATGGAGGACGATGAAGAGAAAGGCA
GGCGGCGCGGCAGTGCGAGGCCGCGGCATTCGCGGAGTGTCAGCAAGGAC
TCGACGTCTTTAGCGTCTTCTCGTTCCAGTTCATCCAGCAGCTCATCCGC
GTCCTCCTCCACGTCCTCGTCGTCTTCGTCTTCATCTATGTCCAGCTCTT
CCTCTTCTAGGTCCTCAGATTCGGACTGA
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Synonyms
Publications