EWM21643.1, cds9092 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21643.1 vs. NCBI_GenBank
Match: gi|585101898|gb|EWM21643.1| (mRNA splicing factor, Cwf21 [Nannochloropsis gaditana]) HSP 1 Score: 775.393 bits (2001), Expect = 0.000e+0 Identity = 392/392 (100.00%), Postives = 392/392 (100.00%), Query Frame = 0
Query: 1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDTFKAAVLAKANQEILEHKRKRQIEAQVYEMEERMRDQGYSESEIKDKATALRERLKGNNLALVAANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWDPEAQNRRREARHREREEKRKKRQVEEIERKKRLRRFEGDTIQGKERRQAEERREMKGGRNAASDEEDDRWRPSADEPDDVRGGLARPHQDKEDMRTRERADYRAQDGQRLKRTRSGSRDGGMSRIGQKGMKNRDADEGQDSRMQRRGDSGDARGYRGRIAREGSRNHRRGMEDDEEKGRRRGSARPRHSRSVSKDSTSLASSRSSSSSSSSASSSTSSSSSSSSMSSSSSSRSSDSD 392
MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDTFKAAVLAKANQEILEHKRKRQIEAQVYEMEERMRDQGYSESEIKDKATALRERLKGNNLALVAANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWDPEAQNRRREARHREREEKRKKRQVEEIERKKRLRRFEGDTIQGKERRQAEERREMKGGRNAASDEEDDRWRPSADEPDDVRGGLARPHQDKEDMRTRERADYRAQDGQRLKRTRSGSRDGGMSRIGQKGMKNRDADEGQDSRMQRRGDSGDARGYRGRIAREGSRNHRRGMEDDEEKGRRRGSARPRHSRSVSKDSTSLASSRSSSSSSSSASSSTSSSSSSSSMSSSSSSRSSDSD
Sbjct: 1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDTFKAAVLAKANQEILEHKRKRQIEAQVYEMEERMRDQGYSESEIKDKATALRERLKGNNLALVAANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWDPEAQNRRREARHREREEKRKKRQVEEIERKKRLRRFEGDTIQGKERRQAEERREMKGGRNAASDEEDDRWRPSADEPDDVRGGLARPHQDKEDMRTRERADYRAQDGQRLKRTRSGSRDGGMSRIGQKGMKNRDADEGQDSRMQRRGDSGDARGYRGRIAREGSRNHRRGMEDDEEKGRRRGSARPRHSRSVSKDSTSLASSRSSSSSSSSASSSTSSSSSSSSMSSSSSSRSSDSD 392
BLAST of EWM21643.1 vs. NCBI_GenBank
Match: gi|1045404256|dbj|GAU15169.1| (hypothetical protein TSUD_09070 [Trifolium subterraneum]) HSP 1 Score: 121.324 bits (303), Expect = 3.849e-26 Identity = 72/165 (43.64%), Postives = 98/165 (59.39%), Query Frame = 0
Query: 1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVS----GHGGPQDTFKAAVLAKANQEILEHKRKRQIEAQVYEMEERMRDQGYSESEIKDKATALRERLKGNNLALVA-ANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWDPEAQN 160
MYNGIGLQT RGS T+GY+ N+ +V PR T+ VS G G Q T A V KAN+EILEH RKRQI+ ++ +E+++ DQGY+++EI +K R NNL A N + + T TH++AARK ++E L+ AFGI V E D E ++
Sbjct: 1 MYNGIGLQTPRGSGTNGYIQSNKFFVKPR-----TSKVSENMKGFEGDQGT--AGVSRKANKEILEHDRKRQIQLKLVILEDKLIDQGYTDAEIAEKLEEAR-----NNLEAAADENDSNLDKVSDTQTHQIAARKERQMETLKAAFGIVSSEVNDEGPDNEGKD 153
BLAST of EWM21643.1 vs. NCBI_GenBank
Match: gi|1208519991|gb|OWM76135.1| (hypothetical protein CDL15_Pgr009781 [Punica granatum]) HSP 1 Score: 119.013 bits (297), Expect = 1.855e-25 Identity = 79/201 (39.30%), Postives = 114/201 (56.72%), Query Frame = 0
Query: 1 MYNGIGLQTARGSATSGYVTKNRGYVPPR--RVRQETALVSGHGGPQDTFKAAVLAKANQEILEHKRKRQIEAQVYEMEERMRDQGYSESEIKDKATALRERLKGNNLALVAANKTGGEGSEM--------TDTHEVAARKAEEIERLRNAFGI--AQDHVEGETWDPE-----AQNRRREARHREREEKRKKRQVEEIER 184
MYNGIGLQT RGS T+GY+ N+ +V P+ RV + T G G A V K N++ILEH RKRQIE ++ +E+++ DQGY+E+EI +K R L+ A VAA +G G+ + T TH++AARK +++E R A GI +D+ E +P+ Q+ RRE +RE R K+ E+ +R
Sbjct: 1 MYNGIGLQTPRGSGTNGYIQTNKFFVKPKTGRVAENTKGFEGDQGT-----AGVSRKPNKDILEHDRKRQIELKLVVLEDKLTDQGYTEAEIAEKLAEARRTLE----AAVAAEASGEPGAIVVADTKVSDTQTHQIAARKEKQMETFRAALGIGLTKDNSEETEEEPKGAQKSGQHERREHNFLDREYSRTKQNKEKSKR 192
BLAST of EWM21643.1 vs. NCBI_GenBank
Match: gi|1042309996|ref|XP_017350656.1| (PREDICTED: serine/arginine repetitive matrix protein 2-like [Ictalurus punctatus]) HSP 1 Score: 118.627 bits (296), Expect = 3.357e-25 Identity = 65/163 (39.88%), Postives = 98/163 (60.12%), Query Frame = 0
Query: 1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDT-----FKAAVLAKANQEILEHKRKRQIEAQVYEMEERMRDQGYSESEIKDKATALRERL--KGNNLALVAANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWDP 156
MYNGIGL T RGS T+GYV +N V +R R + HGGP+D ++ + + N +ILEH+RKRQ+E + E+++ M +QGYS EI++K ++ R L K + A A E + +T+TH +AA ++ +RLR AFGI D+V+G ++ P
Sbjct: 1 MYNGIGLTTPRGSGTNGYVQRNLSSVRAKRSRDD------HGGPKDEKDRERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVSSFRMMLQEKQDPPAPTA------EKANVTETHALAAANQQKNDRLREAFGIGSDYVDGSSFHP 151
BLAST of EWM21643.1 vs. NCBI_GenBank
Match: gi|298712516|emb|CBJ26784.1| (Unknown (protein for IMAGE:7297131) [Ectocarpus siliculosus]) HSP 1 Score: 117.087 bits (292), Expect = 4.843e-25 Identity = 70/181 (38.67%), Postives = 111/181 (61.33%), Query Frame = 0
Query: 1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDTFKAAVLAKANQEILEHKRKRQIEAQVYEMEERMRDQGYSESEIKDKATALRERL--------KGNNLALVAANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWDPEAQNRRREARHREREEK 173
MYN +G++T RGS TSG+V NR +V + R +G +D ++ KAN+E+L+H+RKR++EA+++E++E M D+GYS++EI++K +R+ L K + L GG G+ D+H +KA++ R+R AFG+ D+ GE +D EAQ R++EAR +ERE K
Sbjct: 32 MYNNVGIRTPRGSGTSGHVMSNRSHVRAQAFRMGIDRNTGKLQARD-WEEPPPRKANEELLDHQRKRKVEAKIFELQEAMADRGYSDAEIEEKVAEVRKGLEEREGSGQKASLLKGKKGGGGGGGGAGTMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERKKEARRKEREAK 211
BLAST of EWM21643.1 vs. NCBI_GenBank
Match: gi|390345104|ref|XP_003726265.1| (PREDICTED: serine/arginine repetitive matrix protein 2 isoform X2 [Strongylocentrotus purpuratus]) HSP 1 Score: 112.464 bits (280), Expect = 8.745e-24 Identity = 69/160 (43.12%), Postives = 93/160 (58.13%), Query Frame = 0
Query: 1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDTFKAAVLA--KANQEILEHKRKRQIEAQVYEMEERMRDQG-YSESEIKDKATALRERLKGNNLALVAANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWDPE 157
MYNG+GL TARGS T+GYV +N V R +Q+ S ++ KA L NQEIL HKRKRQ+E + EM+E M +QG YS+ EI+ K A R+ L A K E + +T THE+A K ++ +LR AFGI +V+G ++DPE
Sbjct: 1 MYNGVGLSTARGSGTNGYVQRNFALV--RNQKQKVDYKSE----EEIQKAEALLYRPPNQEILAHKRKRQVELKCTEMKEVMEEQGTYSKEEIEKKVIAFRKMLFEKEGISDLAGKATPERATLTGTHEIAEAKEKQNAKLREAFGIKDGYVDGSSFDPE 154
BLAST of EWM21643.1 vs. NCBI_GenBank
Match: gi|780113045|ref|XP_011676803.1| (PREDICTED: serine/arginine repetitive matrix protein 2 isoform X1 [Strongylocentrotus purpuratus] >gi|780113050|ref|XP_011676804.1| PREDICTED: serine/arginine repetitive matrix protein 2 isoform X1 [Strongylocentrotus purpuratus]) HSP 1 Score: 112.464 bits (280), Expect = 9.753e-24 Identity = 69/160 (43.12%), Postives = 93/160 (58.13%), Query Frame = 0
Query: 1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDTFKAAVLA--KANQEILEHKRKRQIEAQVYEMEERMRDQG-YSESEIKDKATALRERLKGNNLALVAANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWDPE 157
MYNG+GL TARGS T+GYV +N V R +Q+ S ++ KA L NQEIL HKRKRQ+E + EM+E M +QG YS+ EI+ K A R+ L A K E + +T THE+A K ++ +LR AFGI +V+G ++DPE
Sbjct: 1 MYNGVGLSTARGSGTNGYVQRNFALV--RNQKQKVDYKSE----EEIQKAEALLYRPPNQEILAHKRKRQVELKCTEMKEVMEEQGTYSKEEIEKKVIAFRKMLFEKEGISDLAGKATPERATLTGTHEIAEAKEKQNAKLREAFGIKDGYVDGSSFDPE 154
BLAST of EWM21643.1 vs. NCBI_GenBank
Match: gi|1045437848|gb|OCF32078.1| (pre-mRNA-splicing factor CWC21 [Kwoniella heveanensis BCC8398]) HSP 1 Score: 110.923 bits (276), Expect = 2.146e-23 Identity = 77/216 (35.65%), Postives = 111/216 (51.39%), Query Frame = 0
Query: 1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDTF------------KAAVLAKANQEILEHKRKRQIEAQVYEMEERMRDQGYSESEIKDKATALRERLKGNNLALVAANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWDPEAQNRR------REARHREREEKRKKRQVE------EIERKKRLRRFE 192
MY +GL TARGS T+GYV++N ++ ++R+ G P +F A V + ILEH+RKR+IE +V E+ + M D+G + I+D ALRE+L NL G S TD+H +AA K E+ R++ A G++ DHVEG+ + E + + RE R R R E KR+ E E E K++LRR E
Sbjct: 1 MYGNVGLATARGSGTNGYVSRNTAFL---KIRE--------GPPGGSFGGRYSDLDDVRGSAPVHRAPDAGILEHERKRRIEVKVMELRDEMEDKGADDEAIEDACAALREKLSAANLP--------GPKSRPTDSHSIAAAKQAEMSRMQRALGVSSDHVEGKAFQRETEEEKAARLAEREERDRARVEAALKREKEAEKRKREWEEKEKLRRRE 197
BLAST of EWM21643.1 vs. NCBI_GenBank
Match: gi|1176103126|ref|XP_020622328.1| (serine/arginine repetitive matrix protein 2-like [Orbicella faveolata]) HSP 1 Score: 113.235 bits (282), Expect = 2.281e-23 Identity = 68/160 (42.50%), Postives = 98/160 (61.25%), Query Frame = 0
Query: 1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDTFKAAVL--AKANQEILEHKRKRQIEAQVYEMEERMRDQGYSESEIKDKATALRERLKGNNLALVA--ANKTGGEG-SEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWD 155
MYN IGLQTARGS T+GYV +N + R R+E V H +D K + K NQEILEH+RKRQIE + E+++ M +QGY++SEI+ K LR N L+ A A+K EG S +T+TH++A E+ +++ A GI +D+ +G ++D
Sbjct: 1 MYNNIGLQTARGSGTNGYVQRNLSLL---RSRKEK--VEYHTN-EDLAKLEQMNTKKPNQEILEHERKRQIELKCMELQDLMEEQGYTDSEIESKVEELR-----NILSEQAGIASKDNKEGKSTVTETHQMAEANEEKNAKMKEALGIKKDYKDGSSFD 149
BLAST of EWM21643.1 vs. NCBI_GenBank
Match: gi|780113058|ref|XP_011676805.1| (PREDICTED: serine/arginine repetitive matrix protein 2 isoform X3 [Strongylocentrotus purpuratus]) HSP 1 Score: 110.923 bits (276), Expect = 3.034e-23 Identity = 69/160 (43.12%), Postives = 93/160 (58.13%), Query Frame = 0
Query: 1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDTFKAAVLA--KANQEILEHKRKRQIEAQVYEMEERMRDQG-YSESEIKDKATALRERLKGNNLALVAANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWDPE 157
MYNG+GL TARGS T+GYV +N V R +Q+ S ++ KA L NQEIL HKRKRQ+E + EM+E M +QG YS+ EI+ K A R+ L A K E + +T THE+A K ++ +LR AFGI +V+G ++DPE
Sbjct: 1 MYNGVGLSTARGSGTNGYVQRNFALV--RNQKQKVDYKS----EEEIQKAEALLYRPPNQEILAHKRKRQVELKCTEMKEVMEEQGTYSKEEIEKKVIAFRKMLFEKEGISDLAGKATPERATLTGTHEIAEAKEKQNAKLREAFGIKDGYVDGSSFDPE 154 The following BLAST results are available for this feature:
BLAST of EWM21643.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|