EWM21643.1, cds9092 (CDS) Nannochloropsis gaditana

Overview
NameEWM21643.1
Unique Namecds9092
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:385407..386585 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21643.1
ProductmRNA splicing factor, Cwf21
Orig transcript idgnl|cribi|Naga_100012g73.1975.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:385407..386585 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR013170mRNA_splic_Cwf21
Homology
BLAST of EWM21643.1 vs. NCBI_GenBank
Match: gi|585101898|gb|EWM21643.1| (mRNA splicing factor, Cwf21 [Nannochloropsis gaditana])

HSP 1 Score: 775.393 bits (2001), Expect = 0.000e+0
Identity = 392/392 (100.00%), Postives = 392/392 (100.00%), Query Frame = 0
Query:    1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDTFKAAVLAKANQEILEHKRKRQIEAQVYEMEERMRDQGYSESEIKDKATALRERLKGNNLALVAANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWDPEAQNRRREARHREREEKRKKRQVEEIERKKRLRRFEGDTIQGKERRQAEERREMKGGRNAASDEEDDRWRPSADEPDDVRGGLARPHQDKEDMRTRERADYRAQDGQRLKRTRSGSRDGGMSRIGQKGMKNRDADEGQDSRMQRRGDSGDARGYRGRIAREGSRNHRRGMEDDEEKGRRRGSARPRHSRSVSKDSTSLASSRSSSSSSSSASSSTSSSSSSSSMSSSSSSRSSDSD 392
            MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDTFKAAVLAKANQEILEHKRKRQIEAQVYEMEERMRDQGYSESEIKDKATALRERLKGNNLALVAANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWDPEAQNRRREARHREREEKRKKRQVEEIERKKRLRRFEGDTIQGKERRQAEERREMKGGRNAASDEEDDRWRPSADEPDDVRGGLARPHQDKEDMRTRERADYRAQDGQRLKRTRSGSRDGGMSRIGQKGMKNRDADEGQDSRMQRRGDSGDARGYRGRIAREGSRNHRRGMEDDEEKGRRRGSARPRHSRSVSKDSTSLASSRSSSSSSSSASSSTSSSSSSSSMSSSSSSRSSDSD
Sbjct:    1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDTFKAAVLAKANQEILEHKRKRQIEAQVYEMEERMRDQGYSESEIKDKATALRERLKGNNLALVAANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWDPEAQNRRREARHREREEKRKKRQVEEIERKKRLRRFEGDTIQGKERRQAEERREMKGGRNAASDEEDDRWRPSADEPDDVRGGLARPHQDKEDMRTRERADYRAQDGQRLKRTRSGSRDGGMSRIGQKGMKNRDADEGQDSRMQRRGDSGDARGYRGRIAREGSRNHRRGMEDDEEKGRRRGSARPRHSRSVSKDSTSLASSRSSSSSSSSASSSTSSSSSSSSMSSSSSSRSSDSD 392          
BLAST of EWM21643.1 vs. NCBI_GenBank
Match: gi|1045404256|dbj|GAU15169.1| (hypothetical protein TSUD_09070 [Trifolium subterraneum])

HSP 1 Score: 121.324 bits (303), Expect = 3.849e-26
Identity = 72/165 (43.64%), Postives = 98/165 (59.39%), Query Frame = 0
Query:    1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVS----GHGGPQDTFKAAVLAKANQEILEHKRKRQIEAQVYEMEERMRDQGYSESEIKDKATALRERLKGNNLALVA-ANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWDPEAQN 160
            MYNGIGLQT RGS T+GY+  N+ +V PR     T+ VS    G  G Q T  A V  KAN+EILEH RKRQI+ ++  +E+++ DQGY+++EI +K    R     NNL   A  N +  +    T TH++AARK  ++E L+ AFGI    V  E  D E ++
Sbjct:    1 MYNGIGLQTPRGSGTNGYIQSNKFFVKPR-----TSKVSENMKGFEGDQGT--AGVSRKANKEILEHDRKRQIQLKLVILEDKLIDQGYTDAEIAEKLEEAR-----NNLEAAADENDSNLDKVSDTQTHQIAARKERQMETLKAAFGIVSSEVNDEGPDNEGKD 153          
BLAST of EWM21643.1 vs. NCBI_GenBank
Match: gi|1208519991|gb|OWM76135.1| (hypothetical protein CDL15_Pgr009781 [Punica granatum])

HSP 1 Score: 119.013 bits (297), Expect = 1.855e-25
Identity = 79/201 (39.30%), Postives = 114/201 (56.72%), Query Frame = 0
Query:    1 MYNGIGLQTARGSATSGYVTKNRGYVPPR--RVRQETALVSGHGGPQDTFKAAVLAKANQEILEHKRKRQIEAQVYEMEERMRDQGYSESEIKDKATALRERLKGNNLALVAANKTGGEGSEM--------TDTHEVAARKAEEIERLRNAFGI--AQDHVEGETWDPE-----AQNRRREARHREREEKRKKRQVEEIER 184
            MYNGIGLQT RGS T+GY+  N+ +V P+  RV + T    G  G      A V  K N++ILEH RKRQIE ++  +E+++ DQGY+E+EI +K    R  L+    A VAA  +G  G+ +        T TH++AARK +++E  R A GI   +D+ E    +P+      Q+ RRE    +RE  R K+  E+ +R
Sbjct:    1 MYNGIGLQTPRGSGTNGYIQTNKFFVKPKTGRVAENTKGFEGDQGT-----AGVSRKPNKDILEHDRKRQIELKLVVLEDKLTDQGYTEAEIAEKLAEARRTLE----AAVAAEASGEPGAIVVADTKVSDTQTHQIAARKEKQMETFRAALGIGLTKDNSEETEEEPKGAQKSGQHERREHNFLDREYSRTKQNKEKSKR 192          
BLAST of EWM21643.1 vs. NCBI_GenBank
Match: gi|1042309996|ref|XP_017350656.1| (PREDICTED: serine/arginine repetitive matrix protein 2-like [Ictalurus punctatus])

HSP 1 Score: 118.627 bits (296), Expect = 3.357e-25
Identity = 65/163 (39.88%), Postives = 98/163 (60.12%), Query Frame = 0
Query:    1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDT-----FKAAVLAKANQEILEHKRKRQIEAQVYEMEERMRDQGYSESEIKDKATALRERL--KGNNLALVAANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWDP 156
            MYNGIGL T RGS T+GYV +N   V  +R R +      HGGP+D       ++ +  + N +ILEH+RKRQ+E +  E+++ M +QGYS  EI++K ++ R  L  K +  A  A      E + +T+TH +AA   ++ +RLR AFGI  D+V+G ++ P
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSVRAKRSRDD------HGGPKDEKDRERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVSSFRMMLQEKQDPPAPTA------EKANVTETHALAAANQQKNDRLREAFGIGSDYVDGSSFHP 151          
BLAST of EWM21643.1 vs. NCBI_GenBank
Match: gi|298712516|emb|CBJ26784.1| (Unknown (protein for IMAGE:7297131) [Ectocarpus siliculosus])

HSP 1 Score: 117.087 bits (292), Expect = 4.843e-25
Identity = 70/181 (38.67%), Postives = 111/181 (61.33%), Query Frame = 0
Query:    1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDTFKAAVLAKANQEILEHKRKRQIEAQVYEMEERMRDQGYSESEIKDKATALRERL--------KGNNLALVAANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWDPEAQNRRREARHREREEK 173
            MYN +G++T RGS TSG+V  NR +V  +  R      +G    +D ++     KAN+E+L+H+RKR++EA+++E++E M D+GYS++EI++K   +R+ L        K + L        GG G+   D+H    +KA++  R+R AFG+  D+  GE +D EAQ R++EAR +ERE K
Sbjct:   32 MYNNVGIRTPRGSGTSGHVMSNRSHVRAQAFRMGIDRNTGKLQARD-WEEPPPRKANEELLDHQRKRKVEAKIFELQEAMADRGYSDAEIEEKVAEVRKGLEEREGSGQKASLLKGKKGGGGGGGGAGTMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERKKEARRKEREAK 211          
BLAST of EWM21643.1 vs. NCBI_GenBank
Match: gi|390345104|ref|XP_003726265.1| (PREDICTED: serine/arginine repetitive matrix protein 2 isoform X2 [Strongylocentrotus purpuratus])

HSP 1 Score: 112.464 bits (280), Expect = 8.745e-24
Identity = 69/160 (43.12%), Postives = 93/160 (58.13%), Query Frame = 0
Query:    1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDTFKAAVLA--KANQEILEHKRKRQIEAQVYEMEERMRDQG-YSESEIKDKATALRERLKGNNLALVAANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWDPE 157
            MYNG+GL TARGS T+GYV +N   V  R  +Q+    S     ++  KA  L     NQEIL HKRKRQ+E +  EM+E M +QG YS+ EI+ K  A R+ L         A K   E + +T THE+A  K ++  +LR AFGI   +V+G ++DPE
Sbjct:    1 MYNGVGLSTARGSGTNGYVQRNFALV--RNQKQKVDYKSE----EEIQKAEALLYRPPNQEILAHKRKRQVELKCTEMKEVMEEQGTYSKEEIEKKVIAFRKMLFEKEGISDLAGKATPERATLTGTHEIAEAKEKQNAKLREAFGIKDGYVDGSSFDPE 154          
BLAST of EWM21643.1 vs. NCBI_GenBank
Match: gi|780113045|ref|XP_011676803.1| (PREDICTED: serine/arginine repetitive matrix protein 2 isoform X1 [Strongylocentrotus purpuratus] >gi|780113050|ref|XP_011676804.1| PREDICTED: serine/arginine repetitive matrix protein 2 isoform X1 [Strongylocentrotus purpuratus])

HSP 1 Score: 112.464 bits (280), Expect = 9.753e-24
Identity = 69/160 (43.12%), Postives = 93/160 (58.13%), Query Frame = 0
Query:    1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDTFKAAVLA--KANQEILEHKRKRQIEAQVYEMEERMRDQG-YSESEIKDKATALRERLKGNNLALVAANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWDPE 157
            MYNG+GL TARGS T+GYV +N   V  R  +Q+    S     ++  KA  L     NQEIL HKRKRQ+E +  EM+E M +QG YS+ EI+ K  A R+ L         A K   E + +T THE+A  K ++  +LR AFGI   +V+G ++DPE
Sbjct:    1 MYNGVGLSTARGSGTNGYVQRNFALV--RNQKQKVDYKSE----EEIQKAEALLYRPPNQEILAHKRKRQVELKCTEMKEVMEEQGTYSKEEIEKKVIAFRKMLFEKEGISDLAGKATPERATLTGTHEIAEAKEKQNAKLREAFGIKDGYVDGSSFDPE 154          
BLAST of EWM21643.1 vs. NCBI_GenBank
Match: gi|1045437848|gb|OCF32078.1| (pre-mRNA-splicing factor CWC21 [Kwoniella heveanensis BCC8398])

HSP 1 Score: 110.923 bits (276), Expect = 2.146e-23
Identity = 77/216 (35.65%), Postives = 111/216 (51.39%), Query Frame = 0
Query:    1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDTF------------KAAVLAKANQEILEHKRKRQIEAQVYEMEERMRDQGYSESEIKDKATALRERLKGNNLALVAANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWDPEAQNRR------REARHREREEKRKKRQVE------EIERKKRLRRFE 192
            MY  +GL TARGS T+GYV++N  ++   ++R+        G P  +F             A V    +  ILEH+RKR+IE +V E+ + M D+G  +  I+D   ALRE+L   NL         G  S  TD+H +AA K  E+ R++ A G++ DHVEG+ +  E +  +      RE R R R E   KR+ E      E E K++LRR E
Sbjct:    1 MYGNVGLATARGSGTNGYVSRNTAFL---KIRE--------GPPGGSFGGRYSDLDDVRGSAPVHRAPDAGILEHERKRRIEVKVMELRDEMEDKGADDEAIEDACAALREKLSAANLP--------GPKSRPTDSHSIAAAKQAEMSRMQRALGVSSDHVEGKAFQRETEEEKAARLAEREERDRARVEAALKREKEAEKRKREWEEKEKLRRRE 197          
BLAST of EWM21643.1 vs. NCBI_GenBank
Match: gi|1176103126|ref|XP_020622328.1| (serine/arginine repetitive matrix protein 2-like [Orbicella faveolata])

HSP 1 Score: 113.235 bits (282), Expect = 2.281e-23
Identity = 68/160 (42.50%), Postives = 98/160 (61.25%), Query Frame = 0
Query:    1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDTFKAAVL--AKANQEILEHKRKRQIEAQVYEMEERMRDQGYSESEIKDKATALRERLKGNNLALVA--ANKTGGEG-SEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWD 155
            MYN IGLQTARGS T+GYV +N   +   R R+E   V  H   +D  K   +   K NQEILEH+RKRQIE +  E+++ M +QGY++SEI+ K   LR     N L+  A  A+K   EG S +T+TH++A    E+  +++ A GI +D+ +G ++D
Sbjct:    1 MYNNIGLQTARGSGTNGYVQRNLSLL---RSRKEK--VEYHTN-EDLAKLEQMNTKKPNQEILEHERKRQIELKCMELQDLMEEQGYTDSEIESKVEELR-----NILSEQAGIASKDNKEGKSTVTETHQMAEANEEKNAKMKEALGIKKDYKDGSSFD 149          
BLAST of EWM21643.1 vs. NCBI_GenBank
Match: gi|780113058|ref|XP_011676805.1| (PREDICTED: serine/arginine repetitive matrix protein 2 isoform X3 [Strongylocentrotus purpuratus])

HSP 1 Score: 110.923 bits (276), Expect = 3.034e-23
Identity = 69/160 (43.12%), Postives = 93/160 (58.13%), Query Frame = 0
Query:    1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDTFKAAVLA--KANQEILEHKRKRQIEAQVYEMEERMRDQG-YSESEIKDKATALRERLKGNNLALVAANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWDPE 157
            MYNG+GL TARGS T+GYV +N   V  R  +Q+    S     ++  KA  L     NQEIL HKRKRQ+E +  EM+E M +QG YS+ EI+ K  A R+ L         A K   E + +T THE+A  K ++  +LR AFGI   +V+G ++DPE
Sbjct:    1 MYNGVGLSTARGSGTNGYVQRNFALV--RNQKQKVDYKS----EEEIQKAEALLYRPPNQEILAHKRKRQVELKCTEMKEVMEEQGTYSKEEIEKKVIAFRKMLFEKEGISDLAGKATPERATLTGTHEIAEAKEKQNAKLREAFGIKDGYVDGSSFDPE 154          
The following BLAST results are available for this feature:
BLAST of EWM21643.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101898|gb|EWM21643.1|0.000e+0100.00mRNA splicing factor, Cwf21 [Nannochloropsis gadit... [more]
gi|1045404256|dbj|GAU15169.1|3.849e-2643.64hypothetical protein TSUD_09070 [Trifolium subterr... [more]
gi|1208519991|gb|OWM76135.1|1.855e-2539.30hypothetical protein CDL15_Pgr009781 [Punica grana... [more]
gi|1042309996|ref|XP_017350656.1|3.357e-2539.88PREDICTED: serine/arginine repetitive matrix prote... [more]
gi|298712516|emb|CBJ26784.1|4.843e-2538.67Unknown (protein for IMAGE:7297131) [Ectocarpus si... [more]
gi|390345104|ref|XP_003726265.1|8.745e-2443.13PREDICTED: serine/arginine repetitive matrix prote... [more]
gi|780113045|ref|XP_011676803.1|9.753e-2443.13PREDICTED: serine/arginine repetitive matrix prote... [more]
gi|1045437848|gb|OCF32078.1|2.146e-2335.65pre-mRNA-splicing factor CWC21 [Kwoniella heveanen... [more]
gi|1176103126|ref|XP_020622328.1|2.281e-2342.50serine/arginine repetitive matrix protein 2-like [... [more]
gi|780113058|ref|XP_011676805.1|3.034e-2343.13PREDICTED: serine/arginine repetitive matrix prote... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9122rna9122Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications