rna9118, rna9118 (mRNA) Nannochloropsis gaditana

Overview
Namerna9118
Unique Namerna9118
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1768
Alignment locationKK037251.1:375137..376891 +

Link to JBrowse

Properties
Property NameValue
Productcheckpoint protein hus1
Orig transcript idgnl|cribi|Naga_100012g69.1905.mrna
Orig protein idgnl|cribi|Naga_100012g69.1905
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:375137..376891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100012g69gene8841Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9118rna9118-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21573.1cds9088Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9118 ID=rna9118|Name=rna9118|organism=Nannochloropsis gaditana|type=mRNA|length=1768bp
TCTTGCCCCTTCTCGTCCTCTCAGTCTTGGCGATCCTCCTTGGCCGGGAA
ACGCCGTGCGTCGCTGCACCAGGTGTTGTAATAGCACATGAGAAACACGA
ATGTAAAGTGGCCTGAACGAGCTCCTCTATCGTCATAGTCACACTATTTG
GAATTAAGGCTCGACAGCACTCTGACAGGCTATCCCCGCAGCTTAACCTC
CCGATCCTAATATAATAAATAATGAGAGATATTATACCACAAGTCCTTCA
AATAACCCTGCAACATACTTCGGGCTTCCACGATGTACTATATAAACACA
TGCAACGGAGAGAATCGTATGACTGCCATCGTCCAGGAGCCTCAAATGAA
GAAATGATGCTCCAGGACTCCTTCACTTCCCCCGCATCATATTCTACCAC
AAGGCAAAAGTTGAAAAGGCTTTGAACTTGATGAGAGATTGAGCATTTAT
GTCTTATCCTATTTTCAAAGCGCAAATACAGATATCAATCATTTTTCAAA
CATGTTCATGTGCTCTAGGCTGCGCTACGCATTCTGCTGCTGCTACAGCT
GCGACGAGTAAAAGTCACGGCTCTAGTCACCATTCGACCCCATCTGCAGT
CTCGCTCGCTATCTATCCGTGTATCGGCCGGGATTGTAATGGAAACCAGT
TGCGACGAGCGTTGTGCCGTCATACAGGGAATCTCGCACCGCAGCGAACT
CCCCAAACTGCTCTCATTTTTGCGGGCCGCATGCCTGGACCCTCTTCTCC
AAGAGTCGTGGGTAAGCAGAGAAAAGGTGCTGGCACCGGCCTCGATCGAT
AGAAGGCGGCGTGCTGTGACTCTACGGGACGAGTTTATTGAACGCGTAAG
CAGCAGTACTGAAAGTCCGCACTTGCATTTACGCTTGAAGGGATCTTGTC
GGCAACAAAACGGAGGCAGTACAGGTTTTGAGGGGGGAGCAGGGTTGGGA
GGGCGGAGAGGGATGAAGGGGCGGGAGAGGACCCAGCGTGTCTTAATGTA
CGAGGAGAGAGACGTGCGTTCTAGTGCGGAGGTGCTGATTCGACACCGGA
TTACGACGCCTGTTTACGGGGAGGACGTGGCGGGTGAAGAGCCGGAGGAG
GATGGTGGGGCTGGGAGGGGAGCCGGGGCGAAAAAGGAAAGAGCAACCAC
GACAGTCGCGCGAGCGGAAGTCGCTCGTAACCAAGAAGAAGGGGCCTTCG
AGACTTTTCTTCGTTTCCAAGGATGTAGTGTGCAGTCTAGGGAACTTTTG
AAGCGCGGGATCAGGTGCCAGCTGACAGAGGGTGTACGAATCTCGTTGTT
CAGGATAGAAAGAGGACAGCAGGAGCTGTCGGGGACCGGGGGGGGCGGAG
AGGGAGACGATGCAGCCATGGATCTGCTATTTGTTGAGCTCGAGGCACCA
GTGGGCGCACACGGAAGCGTGCTGGCGAGTATAGAGGCTGTGAAAGAGGC
GGCGGCGTTCTTGCGCGGGTAAGTCGTGGTGAGCCTGCATAGTTATGGGG
TAATAGGAGAGGCATAGGAGGACGGCAACACAGGCTTGAGTGCTGCGTTT
TTTCAATAAGATTTATCGCTTATGCTGGAACATTTTTTCTGGTGCATTGT
ACAGTTCAGTGGCCGTTCGGCCTCGCCGGGGCTAATGATGGAGGGCAAGA
GCGGTCGGTAAGGCGAACGAAAAGCATGCGTGTGATAGGGAGTAGAGCAT
GAAAGTCTCGAATGTATCCCGGTAAAGGGCACAGTGCTGGATATAAATAC
GTACGTTGCAGTAATTGC
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protein sequence of rna9118

>rna9118-protein ID=rna9118-protein|Name=rna9118|organism=Nannochloropsis gaditana|type=polypeptide|length=211bp
MKFRAGLAAKDLGNLNGVAQCFERFGPSCLIYLSERSIRFASPKLGSDEV
RAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRMK
LAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQL
ELPYNRSMRTVLEVGRKSGSHNACVRIAGNGWRPYGGLDIALWSAYFEEP
LRFVCPMVRFL
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mRNA from alignment at KK037251.1:375137..376891+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9118 ID=rna9118|Name=rna9118|organism=Nannochloropsis gaditana|type=mRNA|length=1755bp|location=Sequence derived from alignment at KK037251.1:375137..376891+ (Nannochloropsis gaditana)
TTCACCCTGCCTCCGAAAACTAATCGCAGGCCATATATGTCATACCCATA
GGCCCAAACGTCACCAAACCAATGAAGTTTCGAGCGGGTTTGGCAGCCAA
AGATCTCGGCAATTTGAACGGTAAGGCGGTCACACTCCCTGCAactccca
cctcctcatctcttACCATCATCGGCCTCTCTCCACTCAGGCGTGGCGCA
GTGCTTCGAAAGATTCGGCCCATCGTGCCTGATTTACCTGTCAGAGCGGT
CTATAAGGTTTGCATCCCCTAAACTGGGCAGCGATGAGGTCCGTGCCTTC
AGCGAGATTCAACAGGTTCGTTTTTAATTGAGGGGTCTGGCTTCGAGACG
TTGTGGCAGAGCATATGTCACAGACTACCGCGAAAGTTAAAATTAAGAAA
TATCTTTTCCTACTTTAATTCCTGATGATGCTATTCAttgtcttcttcgt
cgccaCTCGGCTTTCATTTTCATTTTACTACAGGAGAAGGTCTTCTCGGA
GTACCGGATTGCCTCTCTGGCCAACAACTCCATTCTCTTCGAAATCGGAC
TTTCAAACCTGATCAAGGCATTTTCCTCTGCCAAAACCGCACATTTCGTC
AGAATGAAGCTGGCTAAACGTGCTGGTCAGCCGTGCATTTGCTTGGAGGC
GCGGGTGCGTCTTGGGCGTAactggggagggaaaaggagactGTCAATGC
TTGCCAAGAGgcgtgacgaggaggagtagAGACTAATGACACGAAAGACG
GTTCCGTGCACGAACTAAAAGGTCCTCCTACATGATTTCCTTGCCCCAGG
CCCTGGACATGGAACTTCTCCACGAGGTCCCCATTAGAGTCATGCGCGCA
GCCGACATCCAGTACTACATGCCGCCCGACGTGGCCATGCCACGCGTCCA
GCTCGAGCTGCCGTACAACCGTTCCATGCGCACGGTCTTggaggtgggaa
gaaagTCGGGAAGTCATAACGCGTGTGTTCGCATCGCAGGGAACGGGTGG
CGTCCTTACGGTGGGCTCGATATCGCTCTTTGGAGTGCCTATTTCGAAGA
GCCGCTCCGTTTCGTGTGCCCTATGGTCCGCTTCTTATGACTGAATCCTG
CCTACTTTCTCCTTCTATCTCTCGTCTATCTTCATGCTCTACTCAGCGCT
TCAAGATCATGGATCGCTTCTGCTTCGTAGATGGGGACATGACCGGGGCA
TTAAGGTTGCGTCTGCAGAACGATCGGTGCCACGTGCAGACCTTCTACAG
GTACTTCAGGGGAATACTGgcaaaagggggggggctgcttTCAAAAATCA
TTTCCCTGTGCAGTCCTTCGCTGACACTTTTAATCGCCAACTTTTTTTTC
TCACATGCTCCAACAGCAATCTAATACCGCGGTATGTGGAAGGAATGACG
GACGGCGACGAGGACATGAGGCgcacagaggaaggaggttcgGCTTGCTG
CTCTATCAAGCTTGACTCGCGCAAGTTTTTGTCGGCATTGCATTTCATGA
CGATGAAATACGACTCCGCCATTTGTTGCATGATTGAGGATAGTTGCTTA
GTCCTGCATGTGACGCTAGCGGGCAATGTCGGGACCCTTACCTTCTACTT
GCCCATGTACTTGGTCTGaaatgaaggggggggaacaaGAGAAAAGATCG
CGACGGCTATAAATGTACTGGTTCATGAAGATCAAGTGTATATAAGAAGA
TTATGGGGACACGTGTGTatcaaaaagaaagaaagtaCGGTTGCGTCCAA
ATTGC
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Coding sequence (CDS) from alignment at KK037251.1:375137..376891+

>rna9118 ID=rna9118|Name=rna9118|organism=Nannochloropsis gaditana|type=CDS|length=2544bp|location=Sequence derived from alignment at KK037251.1:375137..376891+ (Nannochloropsis gaditana)
ATGAAGTTTCGAGCGGGTTTGGCAGCCAAAGATCTCGGCAATTTGAACGG
CGTGGCGCAGTGCTTCGAAAGATTCGGCCCATCGTGCCTGATTTACCTGT
CAGAGCGGTCTATAAGGTTTGCATCCCCTAAACTGGGCAGCGATGAGGTC
CGTGCCTTCAGCGAGATTCAACAGGAGAAGGTCTTCTCGGAGTACCGGAT
TGCCTCTCTGGCCAACAACTCCATTCTCTTCGAAATCGGACTTTCAAACC
TGATCAAGGCATTTTCCTCTGCCAAAACCGCACATTTCGTCAGAATGAAG
CTGGCTAAACGTGCTGGTCAGCCGTGCATTTGCTTGGAGGCGCGGGCCCT
GGACATGGAACTTCTCCACGAGGTCCCCATTAGAGTCATGCGCGCAGCCG
ACATCCAGTACTACATGCCGCCCGACGTGGCCATGCCACGCGTCCAGCTC
GAGCTGCCGTACAACCGTTCCATGCGCACGGTCTTggaggtgggaagaaa
gTCGGGAAGTCATAACGCGTGTGTTCGCATCGCAGGGAACGGGTGGCGTC
CTTACGGTGGGCTCGATATCGCTCTTTGGAGTGCCTATTTCGAAGAGCCG
CTCCGTTTCGTGTGCCCTATGGTCCGCTTCTTATGAATGAAGTTTCGAGC
GGGTTTGGCAGCCAAAGATCTCGGCAATTTGAACGGCGTGGCGCAGTGCT
TCGAAAGATTCGGCCCATCGTGCCTGATTTACCTGTCAGAGCGGTCTATA
AGGTTTGCATCCCCTAAACTGGGCAGCGATGAGGTCCGTGCCTTCAGCGA
GATTCAACAGGAGAAGGTCTTCTCGGAGTACCGGATTGCCTCTCTGGCCA
ACAACTCCATTCTCTTCGAAATCGGACTTTCAAACCTGATCAAGGCATTT
TCCTCTGCCAAAACCGCACATTTCGTCAGAATGAAGCTGGCTAAACGTGC
TGGTCAGCCGTGCATTTGCTTGGAGGCGCGGGCCCTGGACATGGAACTTC
TCCACGAGGTCCCCATTAGAGTCATGCGCGCAGCCGACATCCAGTACTAC
ATGCCGCCCGACGTGGCCATGCCACGCGTCCAGCTCGAGCTGCCGTACAA
CCGTTCCATGCGCACGGTCTTggaggtgggaagaaagTCGGGAAGTCATA
ACGCGTGTGTTCGCATCGCAGGGAACGGGTGGCGTCCTTACGGTGGGCTC
GATATCGCTCTTTGGAGTGCCTATTTCGAAGAGCCGCTCCGTTTCGTGTG
CCCTATGGTCCGCTTCTTATGAATGAAGTTTCGAGCGGGTTTGGCAGCCA
AAGATCTCGGCAATTTGAACGGCGTGGCGCAGTGCTTCGAAAGATTCGGC
CCATCGTGCCTGATTTACCTGTCAGAGCGGTCTATAAGGTTTGCATCCCC
TAAACTGGGCAGCGATGAGGTCCGTGCCTTCAGCGAGATTCAACAGGAGA
AGGTCTTCTCGGAGTACCGGATTGCCTCTCTGGCCAACAACTCCATTCTC
TTCGAAATCGGACTTTCAAACCTGATCAAGGCATTTTCCTCTGCCAAAAC
CGCACATTTCGTCAGAATGAAGCTGGCTAAACGTGCTGGTCAGCCGTGCA
TTTGCTTGGAGGCGCGGGCCCTGGACATGGAACTTCTCCACGAGGTCCCC
ATTAGAGTCATGCGCGCAGCCGACATCCAGTACTACATGCCGCCCGACGT
GGCCATGCCACGCGTCCAGCTCGAGCTGCCGTACAACCGTTCCATGCGCA
CGGTCTTggaggtgggaagaaagTCGGGAAGTCATAACGCGTGTGTTCGC
ATCGCAGGGAACGGGTGGCGTCCTTACGGTGGGCTCGATATCGCTCTTTG
GAGTGCCTATTTCGAAGAGCCGCTCCGTTTCGTGTGCCCTATGGTCCGCT
TCTTATGAATGAAGTTTCGAGCGGGTTTGGCAGCCAAAGATCTCGGCAAT
TTGAACGGCGTGGCGCAGTGCTTCGAAAGATTCGGCCCATCGTGCCTGAT
TTACCTGTCAGAGCGGTCTATAAGGTTTGCATCCCCTAAACTGGGCAGCG
ATGAGGTCCGTGCCTTCAGCGAGATTCAACAGGAGAAGGTCTTCTCGGAG
TACCGGATTGCCTCTCTGGCCAACAACTCCATTCTCTTCGAAATCGGACT
TTCAAACCTGATCAAGGCATTTTCCTCTGCCAAAACCGCACATTTCGTCA
GAATGAAGCTGGCTAAACGTGCTGGTCAGCCGTGCATTTGCTTGGAGGCG
CGGGCCCTGGACATGGAACTTCTCCACGAGGTCCCCATTAGAGTCATGCG
CGCAGCCGACATCCAGTACTACATGCCGCCCGACGTGGCCATGCCACGCG
TCCAGCTCGAGCTGCCGTACAACCGTTCCATGCGCACGGTCTTggaggtg
ggaagaaagTCGGGAAGTCATAACGCGTGTGTTCGCATCGCAGGGAACGG
GTGGCGTCCTTACGGTGGGCTCGATATCGCTCTTTGGAGTGCCTATTTCG
AAGAGCCGCTCCGTTTCGTGTGCCCTATGGTCCGCTTCTTATGA
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Synonyms
Publications