EWM21573.1, cds9088 (CDS) Nannochloropsis gaditana

Overview
NameEWM21573.1
Unique Namecds9088
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:375208..375256 +
Alignment locationKK037251.1:375327..375451 +
Alignment locationKK037251.1:375620..375790 +
Alignment locationKK037251.1:375936..376226 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21573.1
Productcheckpoint protein hus1
Orig transcript idgnl|cribi|Naga_100012g69.1905.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:375208..375256 +
KK037251.1supercontigKK037251.1:375327..375451 +
KK037251.1supercontigKK037251.1:375620..375790 +
KK037251.1supercontigKK037251.1:375936..376226 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0000077DNA damage checkpoint
GO:0006281DNA repair
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
GO:0030896checkpoint clamp complex
Vocabulary: INTERPRO
TermDefinition
IPR007150Hus1/Mec3
Homology
BLAST of EWM21573.1 vs. NCBI_GenBank
Match: gi|585101828|gb|EWM21573.1| (checkpoint protein hus1 [Nannochloropsis gaditana])

HSP 1 Score: 435.261 bits (1118), Expect = 1.565e-154
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
Query:    1 MKFRAGLAAKDLGNLNGVAQCFERFGPSCLIYLSERSIRFASPKLGSDEVRAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRMKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQLELPYNRSMRTVLEVGRKSGSHNACVRIAGNGWRPYGGLDIALWSAYFEEPLRFVCPMVRFL 211
            MKFRAGLAAKDLGNLNGVAQCFERFGPSCLIYLSERSIRFASPKLGSDEVRAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRMKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQLELPYNRSMRTVLEVGRKSGSHNACVRIAGNGWRPYGGLDIALWSAYFEEPLRFVCPMVRFL
Sbjct:    1 MKFRAGLAAKDLGNLNGVAQCFERFGPSCLIYLSERSIRFASPKLGSDEVRAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRMKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQLELPYNRSMRTVLEVGRKSGSHNACVRIAGNGWRPYGGLDIALWSAYFEEPLRFVCPMVRFL 211          
BLAST of EWM21573.1 vs. NCBI_GenBank
Match: gi|298708772|emb|CBJ30733.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 155.221 bits (391), Expect = 3.529e-43
Identity = 71/163 (43.56%), Postives = 113/163 (69.33%), Query Frame = 0
Query:    1 MKFRAGLAAKDLGNLNGVAQCFERFGPSCLIYLSERSIRFASPKLGSDEVRAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRMKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQLELPYNRSMRTVLE 163
            M+F+A +    L    GV    E+ G +C+++L+E  +  +  + GS+ V  ++E+ Q+ +F EYRI S A N+ILFE   S L++A +S KT+   ++KLAKRAGQPC+ +E RAL++E++H++P++VM A + +YY+PP V  P+VQLELP  RS+RTV++
Sbjct:    1 MRFKAKIVQDKLLAFAGVIGAIEKIGTACVVHLTETRVHLSVQESGSEGVDVYAELIQDMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSIETRALEIEVVHDIPVKVMPANEAEYYLPPKVHSPQVQLELPRQRSLRTVVD 163          
BLAST of EWM21573.1 vs. NCBI_GenBank
Match: gi|301121879|ref|XP_002908666.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262099428|gb|EEY57480.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 102.064 bits (253), Expect = 1.260e-22
Identity = 52/169 (30.77%), Postives = 96/169 (56.80%), Query Frame = 0
Query:    1 MKFRAGLAAKDLGNLNGVAQCFERFGPS------CLIYLSERSIRFASPKLGSDEVRAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRMKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQLELPYNRSMRTVLE 163
            M+FR  LA   L  L  VAQ F R G S      C+  L+  ++  A    G++E+++F+ +Q  ++F +  + S A N I F   + +  +A +S K A  V ++L KR G   +CL  RA+D++++  +PI V+  + +++Y  P V  P++ +E+P  R++R++++
Sbjct:    1 MRFRGTLAKDALAVLLDVAQSFARLGSSSSAKTNCVFTLTPETLSIALKSGGAEELQSFARLQTARLFHDVVVQSRAENHIGFLCDVRHFQQALTSGKDASAVMLRLLKRDGHNFLCLRTRAVDIDIVQSIPIEVLAMSTVEHYREPSVPAPQIAIEMPPLRALRSIVD 169          
BLAST of EWM21573.1 vs. NCBI_GenBank
Match: gi|1214695514|gb|OWZ09274.1| (hypothetical protein PHMEG_00018046 [Phytophthora megakarya])

HSP 1 Score: 100.523 bits (249), Expect = 4.246e-22
Identity = 53/169 (31.36%), Postives = 96/169 (56.80%), Query Frame = 0
Query:    1 MKFRAGLAAKDLGNLNGVAQCFERFG------PSCLIYLSERSIRFASPKLGSDEVRAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRMKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQLELPYNRSMRTVLE 163
            M+FR  LA   L  L  VAQ F R G       +C+  L+  +I  A    G++E+++F+ +Q  ++F +  + S A N I F   + +  +A +S K A  V ++L KR G   +CL  RA+D++++  VPI V+  + +++Y  P V  P++ +E+P  R++R++++
Sbjct:    1 MRFRGTLAKDALVVLLDVAQSFARLGSQSSAKTNCVFTLTPETISIALKSGGAEELQSFARLQTARLFHDVVVQSRAENHIGFLCDVRHFHQALTSGKDASAVMLRLLKRDGSNFLCLRTRAVDIDIVQSVPIEVLAMSTVEHYREPSVPAPQIAIEMPPLRALRSIVD 169          
BLAST of EWM21573.1 vs. NCBI_GenBank
Match: gi|695390765|ref|XP_009519817.1| (hypothetical protein PHYSODRAFT_478616 [Phytophthora sojae] >gi|348684714|gb|EGZ24529.1| hypothetical protein PHYSODRAFT_478616 [Phytophthora sojae])

HSP 1 Score: 100.523 bits (249), Expect = 4.745e-22
Identity = 51/169 (30.18%), Postives = 96/169 (56.80%), Query Frame = 0
Query:    1 MKFRAGLAAKDLGNLNGVAQCFERFGP------SCLIYLSERSIRFASPKLGSDEVRAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRMKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQLELPYNRSMRTVLE 163
            M+FR  LA   L  L  VAQ F R G       +C+  L+  ++  A    G++E+++F+ +Q  ++F +  + S A N I F   + +  +A +S K A  V ++L KR G   +CL  RA+D++++  +PI V+  + +++Y  P V  P++ +E+P  R++R++++
Sbjct:    1 MRFRGTLAKDALAVLLDVAQSFARLGSQSSAKANCVFTLTPETLSIALKSGGAEELQSFARLQTARLFHDVVVQSRAENHIGFVCDVRHFQQALTSGKDASAVMLRLLKRDGNNFLCLRTRAVDIDIVQSIPIEVLAMSTVEHYREPSVPAPQIAIEMPPLRALRSIVD 169          
BLAST of EWM21573.1 vs. NCBI_GenBank
Match: gi|570316471|gb|ETO64419.1| (hypothetical protein F444_18054 [Phytophthora parasitica P1976])

HSP 1 Score: 100.523 bits (249), Expect = 4.896e-22
Identity = 51/169 (30.18%), Postives = 96/169 (56.80%), Query Frame = 0
Query:    1 MKFRAGLAAKDLGNLNGVAQCFERFG------PSCLIYLSERSIRFASPKLGSDEVRAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRMKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQLELPYNRSMRTVLE 163
            M+FR  LA   L  L  VAQ F R G       +C+  L+  ++  A    G++E+++F+ +Q  ++F +  + S A N I F   + +  +A +S K A  V ++L KR G   +CL  RA+D++++  +PI V+  + +++Y  P V  P++ +E+P  R++R++++
Sbjct:    1 MRFRGTLAKDALAVLLDVAQSFARLGSQSSAKTNCVFTLTPETLSIALKSGGAEELQSFARLQTARLFHDVVVQSRAENHIGFLCDVRHFQQALTSGKNASAVMLRLLKRDGNNYLCLRTRAVDIDIVQSIPIEVLAMSTVEHYREPSVPAPQIAIEMPPLRALRSIVD 169          
BLAST of EWM21573.1 vs. NCBI_GenBank
Match: gi|566012776|gb|ETI35687.1| (hypothetical protein F443_18031 [Phytophthora parasitica P1569] >gi|567950216|gb|ETK75933.1| hypothetical protein L915_17550 [Phytophthora parasitica] >gi|567978874|gb|ETL29360.1| hypothetical protein L916_17442 [Phytophthora parasitica] >gi|570940237|gb|ETP05494.1| hypothetical protein F441_17906 [Phytophthora parasitica CJ01A1] >gi|570940255|gb|ETP05512.1| hypothetical protein F441_17901 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 100.138 bits (248), Expect = 5.785e-22
Identity = 51/169 (30.18%), Postives = 96/169 (56.80%), Query Frame = 0
Query:    1 MKFRAGLAAKDLGNLNGVAQCFERFG------PSCLIYLSERSIRFASPKLGSDEVRAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRMKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQLELPYNRSMRTVLE 163
            M+FR  LA   L  L  VAQ F R G       +C+  L+  ++  A    G++E+++F+ +Q  ++F +  + S A N I F   + +  +A +S K A  V ++L KR G   +CL  RA+D++++  +PI V+  + +++Y  P V  P++ +E+P  R++R++++
Sbjct:    1 MRFRGTLAKDALAVLLDVAQSFARLGSQSSAKTNCVFTLTPETLSIALKSGGAEELQSFARLQTARLFHDVVVQSRAENHIGFLCDVRHFQQALTSGKDASAVMLRLLKRDGNNYLCLRTRAVDIDIVQSIPIEVLAMSTVEHYREPSVPAPQIAIEMPPLRALRSIVD 169          
BLAST of EWM21573.1 vs. NCBI_GenBank
Match: gi|675207507|ref|XP_008912638.1| (hypothetical protein PPTG_16643 [Phytophthora parasitica INRA-310] >gi|568008352|gb|ETL82572.1| hypothetical protein L917_17283 [Phytophthora parasitica] >gi|568038284|gb|ETM35820.1| hypothetical protein L914_17345 [Phytophthora parasitica] >gi|568087082|gb|ETN01957.1| hypothetical protein PPTG_16643 [Phytophthora parasitica INRA-310] >gi|570970522|gb|ETP33641.1| hypothetical protein F442_17871 [Phytophthora parasitica P10297] >gi|970635871|gb|KUF80662.1| Checkpoint protein hus1 [Phytophthora nicotianae] >gi|970657660|gb|KUF95516.1| Oral-facial-digital syndrome 1 protein [Phytophthora nicotianae])

HSP 1 Score: 100.138 bits (248), Expect = 6.223e-22
Identity = 51/169 (30.18%), Postives = 96/169 (56.80%), Query Frame = 0
Query:    1 MKFRAGLAAKDLGNLNGVAQCFERFG------PSCLIYLSERSIRFASPKLGSDEVRAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRMKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQLELPYNRSMRTVLE 163
            M+FR  LA   L  L  VAQ F R G       +C+  L+  ++  A    G++E+++F+ +Q  ++F +  + S A N I F   + +  +A +S K A  V ++L KR G   +CL  RA+D++++  +PI V+  + +++Y  P V  P++ +E+P  R++R++++
Sbjct:    1 MRFRGTLAKDALAVLLDVAQSFARLGSQSSAKTNCVFTLTPETLSIALKSGGAEELQSFARLQTARLFHDVVVQSRAENHIGFLCDVRHFQQALTSGKDASAVMLRLLKRDGNNYLCLRTRAVDIDIVQSIPIEVLAMSTVEHYREPSVPAPQIAIEMPPLRALRSIVD 169          
BLAST of EWM21573.1 vs. NCBI_GenBank
Match: gi|673019192|ref|XP_008863557.1| (hypothetical protein H310_01976 [Aphanomyces invadans] >gi|574480471|gb|ETW07464.1| hypothetical protein H310_01976 [Aphanomyces invadans])

HSP 1 Score: 100.138 bits (248), Expect = 6.765e-22
Identity = 56/165 (33.94%), Postives = 91/165 (55.15%), Query Frame = 0
Query:    1 MKFRAGLAAKDLGNLNGVAQCFERFGPS--CLIYLSERSIRFASPKLGSDEVRAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRMKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQLELPYNRSMRTVLE 163
            M+FR  L A     L  V+Q  +R   S  C + L+E  + FA    G D V+ F  +   KVF +  I S A+N+I F +G++N  +A  S K A  + ++L KR G+  + L AR +D++++  +PI V+  A  + Y  P++  P V LE+P  R++RT+ +
Sbjct:    1 MRFRGHLTAASFPILMEVSQFMQRVSSSDMCFVVLNEERMSFAMKTSGED-VQTFVHLNIAKVFGDVVIESRADNNIAFALGIANFSRALQSGKEASGIMLRLLKRDGRSFLSLRARTVDLDIIQNIPIEVVSMATAESYREPNIPPPTVALEMPPLRALRTITD 164          
BLAST of EWM21573.1 vs. NCBI_GenBank
Match: gi|953486803|emb|CEG48865.1| (checkpoint protein [Plasmopara halstedii])

HSP 1 Score: 97.8265 bits (242), Expect = 4.844e-21
Identity = 54/179 (30.17%), Postives = 97/179 (54.19%), Query Frame = 0
Query:    1 MKFRAGLAAKDLGNLNGVAQCFERFG------PSCLIYLSERSIRFASPKLGSDEVRAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRMKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQLELPYNRSMRTVLEVGRKSGSHNA 173
            M+FR  LA   L  L  +AQ F R G       +C+  L+  ++  A    G++E+++F+ +Q  ++F +  + S A N I F   + +  +A +S K A  V ++L KR G   +CL  RA+D++++  +PI V+  + I++Y  P V  P + +E+P  R++R++  V +  G H  
Sbjct:    1 MRFRGTLAKDALVVLLDIAQSFVRLGSQSSAKTNCVFTLTLETLSIALKSGGAEELQSFARLQTTRLFHDVVVQSRAENHIGFLCDMRHFQQALTSGKDASAVMLRLLKRDGSNFLCLRTRAVDIDIIQSIPIEVLAMSTIEHYQEPCVPAPDIAIEMPPLRALRSI--VDKLKGMHKT 177          
The following BLAST results are available for this feature:
BLAST of EWM21573.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101828|gb|EWM21573.1|1.565e-154100.00checkpoint protein hus1 [Nannochloropsis gaditana][more]
gi|298708772|emb|CBJ30733.1|3.529e-4343.56conserved unknown protein [Ectocarpus siliculosus][more]
gi|301121879|ref|XP_002908666.1|1.260e-2230.77conserved hypothetical protein [Phytophthora infes... [more]
gi|1214695514|gb|OWZ09274.1|4.246e-2231.36hypothetical protein PHMEG_00018046 [Phytophthora ... [more]
gi|695390765|ref|XP_009519817.1|4.745e-2230.18hypothetical protein PHYSODRAFT_478616 [Phytophtho... [more]
gi|570316471|gb|ETO64419.1|4.896e-2230.18hypothetical protein F444_18054 [Phytophthora para... [more]
gi|566012776|gb|ETI35687.1|5.785e-2230.18hypothetical protein F443_18031 [Phytophthora para... [more]
gi|675207507|ref|XP_008912638.1|6.223e-2230.18hypothetical protein PPTG_16643 [Phytophthora para... [more]
gi|673019192|ref|XP_008863557.1|6.765e-2233.94hypothetical protein H310_01976 [Aphanomyces invad... [more]
gi|953486803|emb|CEG48865.1|4.844e-2130.17checkpoint protein [Plasmopara halstedii][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9118rna9118Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications