rna9112, rna9112 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9112
Unique Name	rna9112
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1470
Alignment location	KK037251.1:360604..362233 -

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Properties


Property Name	Value
Product	60s ribosomal protein l6
Orig transcript id	gnl\|cribi\|Naga_100012g62.1977.mrna
Orig protein id	gnl\|cribi\|Naga_100012g62.1977
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:360604..362233 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g62	gene8835	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9112	rna9112-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21645.1	cds9082	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:360604..362233-
coding sequence from alignment at KK037251.1:360604..362233-

mRNA sequence

>rna9112 ID=rna9112|Name=rna9112|organism=Nannochloropsis gaditana|type=mRNA|length=1470bp
ATGGTAGCTGTAGCAGAGAAGGAAAATACAAAACCCGAAAATGTGTCCAC
TCCCCTTGTAGCTCTCTCCTCGTATTCTGTCAACAAGGGAAGTGATGAAG
TAGTGGAGGACCTCACCTTACGGCCTAGCAAAGAGGACCGCTTAGCCCTG
TGCGAGGCCCTCTATAAATGCACGGGTTCGTTCAAGCGCATAGTCTCCCC
TTTACTCCCTTATCCGCTTGTCATCAATCGCCTACATCGGGACTTTGTTG
AAGCGCAGGAGATGAGCGGAGGCTCGGCGAAGGAGGCCTTGATGACTTTT
GCCATGAAGATGGAGGAACCCGGCACCAAAGCTTTTTTAAGTGACGCCCA
GGCTCAGATTCGAGCGGAGCCAAAGGTGTACGCTCAGAACATGGTGGATG
ACGAATGGATTAGTGACTTCCAATCTCAAGTGGATTACGTACCGGGCCTG
AGCAAGGGGAAGCGTCTGCTCGACTCCGAAGACGCCAAGCAGTTTGCCAC
TTTTGCCGATGAGATGAAAAGCGCCGGAAATAAATGTTTTGCATCGCAAG
ATTATGAAATGGCATTGACGCGGTACACGCAAGGGGTTGAGCTTTTGCAG
CAAGTCGAGTGCAAAGACGAGCAGCCTCAGCGACACTTGCTTGAGCTCTA
CACCGCGCTCTTGACCAATCAAGCGATCGCAGGCTTGAAAACAAGCGCTT
GGCGCACGTCGCTTACCGCGTGCACTGCTTGCTTGTCAATCAATCCTCGG
AACCTGAAAGCACGCGCACGGCGGGCGGAGGCTTACACTTGCCTGGGCGA
CATGGAGGCCGCCGCCCTCGACTTGGAAGTGATCCTGCGGTTGCAAGCCA
CAGAGTTGCTGGAAGACCACGATCAAGACACGGCACAAGAGCTCTTAGCG
GCCGCACAGAAGGATGCCAGAAAGCTCTCGCAGAGGATCGAGAGGATGAA
GAGGGAGGAAAGCGCGACCGCCAAGCGCATGATGGCCGGGGCGGACTTTA
CTGCGGATCGACACAAGGAGAAGCCCCCCGCCCCGGACATCCCGCAGCCT
CCTTCCATACTCTCGAGCTCGACATCCCGCTCTCGCGCCACGGATCCTCT
GAGTGCTGCACGGCCGGTCTCAAGACTCTCCGCCAAGCCAGGCTCAGAGA
AGCTCATCGACGAGGTGGTCGCCCTGGAGATCCAGCAAAGCCTCATGTAC
ATATACTCCCAGCCCGTCGTGCAGGGCGAGCTGATCATGCTCCGTAAGGC
GGCGGACTACGAATCAGGGCGATTCGTGCAGCGATTGCGGCCTTACCTGG
CGAAGCTGTTGGCGGAGCCCATCTTGGACAGGTACAGTTTCGGGAAGGGG
GAGGAGGGATACCGGAGGATGGAGCGAGCCCTCGGCCAGCACGTGACATC
TAGCGCGGACGTCTGTGAGAACGCAAAAAGCCTCCTGGCGGTCTTGATGG
GGGACCTGCTCGAGGAGTGA

protein sequence of rna9112

>rna9112-protein ID=rna9112-protein|Name=rna9112|organism=Nannochloropsis gaditana|type=polypeptide|length=262bp
MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGGKKAAAP
APAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFR
GKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKV
PDTLNDAYFAVPADVKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLV
AVKKVAQLDGYLKARFSLKKGVKPHEIKIRLSSFLALSLTLRDDTHQHGG
RNAAPTTSTIEH

mRNA from alignment at KK037251.1:360604..362233-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9112 ID=rna9112|Name=rna9112|organism=Nannochloropsis gaditana|type=mRNA|length=1630bp|location=Sequence derived from alignment at KK037251.1:360604..362233- (Nannochloropsis gaditana)
ATGGCTCCGAAGAAAGCAAACAAGCGTGCAGGGAAGCCCCGCACAACCTT
GCTGGCCCGTGGTGTCCCATCTCTGAGTCATGCCGCGGTACGTGCAAGGC
ATCTTTGCCCAAACTTGCTGTCCTACTTCTCTATCTACTCCCATTGGTGC
TCAACAGCTTTCGTTATTTTTTTGTTGACCGCTTACTTCTTTCAATGCAG
ACTGTGAAGAAGGGGGGGCGGTATAGGTTCTTCGGCAAGGGCGGGAAGAA
GGCTGCGGCGCCCGCGCCTGCTGCGGGCAAGGCGCCTCGCTTCTACCCGG
CTGACGACATCCCTGTCCCTCGTCGCAGTGCGCGCCACATTCAGAAACCG
ACCAAGCTTAAGGCAGGTATCAAGCCCGGTTCTGTGCTGATTATGCTCGC
TGGCCGGTTCCGTGGCAAGCGCGTGGTTTTCCTGAAGCAGCTGGCGTCGG
GCACGCTCCTCGTAACGGGTGAGCAAGGGACCGAGACGCGGGAGGTGAAG
GGAAAACGAGGGTTTTTGGTGCCAAGAGAGCATGTGTTAGAACAATTAAA
AAGCGGATAGGCTGCAGATTTATGGAATGGTCAGCCGGTGTCATGTGGGT
GTGTATGATTCGCGTGTCCGATGTTGCGCCCGATGATTAAATGCTTTAGA
AATTGTGATGGCCCTGTGTCTGGCTCTCTGGCGACTAGAAGGGATGCAAC
GACAGGGGTGGCAGAAGGGGTTCGGGTGTTGGGACAAGCAATTTGGAGAA
GAGCTGATGAGACATCAGTTTCAGGGTGTGGAAGTGAGCGTGTGCTCAGC
ACAGTTCTCTGATGGGCTCACTTTGAAGGACGGATAGGCTTGCACCTTTC
CTGACTCTGGAGAGGTCAAGGAGAGAAACAGAGCCATCCGCTTTCGCGAG
CGCCTTGTCGCTTGGTTCTCTTGCAGTGATTTCCGAATGCGTGGCCCATA
TCCCCTCTACCCGGCCTCCACTTTGGAGCTGTTGATTTGTCGATGGTTGG
GCCAGCCTGTCGGGTTTATGACTTATGGATTATGAGAGATGAGGGCTGTT
ATGAGGGAGTATTATGCCTAGCCCCACCTGTATACGAAGGACTCATTTCC
TCCCATCGCAGGCCCTTACTCATTGAATGGTGTCCCTCTCCGCCGAGTCA
ATCAAGCCTATGTAATTGTCACCAGCCAAGTGGTGGATATCTCAGCCGTC
AAGGTGCCTGACACGTTGAATGATGCGTATTTCGCGGTCCCGGCGGATGT
CAAAGGCAAGGAGACGATCCTTGCCGCTGGTGCGGGGAAGAAGGCGACTG
AGGTGTCTGAGTCGCGCAAGAAGGACCAGAAGGCGGTGGACGAGCAGGTG
CTGGTAGCTGTCAAGAAGGTGGCGCAATTGGATGGGTACTTGAAGGCGCG
ATTTTCCTTGAAAAAGGGCGTGAAGCCGCACGAGATCAAGTTCTAAGGAG
GTGGAAGGGATGATGGGAGGATGCTTTGTGTTGGTTGTTGGGCGTTGTTC
ATGATAGGGTTTCTGGATCGGTAGGATCCGTCTGTCGTCATTCTTAGCTC
TCTCTCTCACTTTGAGGGATGATACTCATCAACATGGTGGGAGGAATGCG
GCGCCCACCACATCCACGATCGAACATTAG

Coding sequence (CDS) from alignment at KK037251.1:360604..362233-

>rna9112 ID=rna9112|Name=rna9112|organism=Nannochloropsis gaditana|type=CDS|length=3156bp|location=Sequence derived from alignment at KK037251.1:360604..362233- (Nannochloropsis gaditana)
GATCCGTCTGTCGTCATTCTTAGCTCTCTCTCTCACTTTGAGGGATGATA
CTCATCAACATGGTGGGAGGAATGCGGCGCCCACCACATCCACGATCGAA
CATTAGGCCCTTACTCATTGAATGGTGTCCCTCTCCGCCGAGTCAATCAA
GCCTATGTAATTGTCACCAGCCAAGTGGTGGATATCTCAGCCGTCAAGGT
GCCTGACACGTTGAATGATGCGTATTTCGCGGTCCCGGCGGATGTCAAAG
GCAAGGAGACGATCCTTGCCGCTGGTGCGGGGAAGAAGGCGACTGAGGTG
TCTGAGTCGCGCAAGAAGGACCAGAAGGCGGTGGACGAGCAGGTGCTGGT
AGCTGTCAAGAAGGTGGCGCAATTGGATGGGTACTTGAAGGCGCGATTTT
CCTTGAAAAAGGGCGTGAAGCCGCACGAGATCAAACTGTGAAGAAGGGGG
GGCGGTATAGGTTCTTCGGCAAGGGCGGGAAGAAGGCTGCGGCGCCCGCG
CCTGCTGCGGGCAAGGCGCCTCGCTTCTACCCGGCTGACGACATCCCTGT
CCCTCGTCGCAGTGCGCGCCACATTCAGAAACCGACCAAGCTTAAGGCAG
GTATCAAGCCCGGTTCTGTGCTGATTATGCTCGCTGGCCGGTTCCGTGGC
AAGCGCGTGGTTTTCCTGAAGCAGCTGGCGTCGGGCACGCTCCTCGTAAC
GGATGGCTCCGAAGAAAGCAAACAAGCGTGCAGGGAAGCCCCGCACAACC
TTGCTGGCCCGTGGTGTCCCATCTCTGAGTCATGCCGCGGATCCGTCTGT
CGTCATTCTTAGCTCTCTCTCTCACTTTGAGGGATGATACTCATCAACAT
GGTGGGAGGAATGCGGCGCCCACCACATCCACGATCGAACATTAGGCCCT
TACTCATTGAATGGTGTCCCTCTCCGCCGAGTCAATCAAGCCTATGTAAT
TGTCACCAGCCAAGTGGTGGATATCTCAGCCGTCAAGGTGCCTGACACGT
TGAATGATGCGTATTTCGCGGTCCCGGCGGATGTCAAAGGCAAGGAGACG
ATCCTTGCCGCTGGTGCGGGGAAGAAGGCGACTGAGGTGTCTGAGTCGCG
CAAGAAGGACCAGAAGGCGGTGGACGAGCAGGTGCTGGTAGCTGTCAAGA
AGGTGGCGCAATTGGATGGGTACTTGAAGGCGCGATTTTCCTTGAAAAAG
GGCGTGAAGCCGCACGAGATCAAACTGTGAAGAAGGGGGGGCGGTATAGG
TTCTTCGGCAAGGGCGGGAAGAAGGCTGCGGCGCCCGCGCCTGCTGCGGG
CAAGGCGCCTCGCTTCTACCCGGCTGACGACATCCCTGTCCCTCGTCGCA
GTGCGCGCCACATTCAGAAACCGACCAAGCTTAAGGCAGGTATCAAGCCC
GGTTCTGTGCTGATTATGCTCGCTGGCCGGTTCCGTGGCAAGCGCGTGGT
TTTCCTGAAGCAGCTGGCGTCGGGCACGCTCCTCGTAACGGATGGCTCCG
AAGAAAGCAAACAAGCGTGCAGGGAAGCCCCGCACAACCTTGCTGGCCCG
TGGTGTCCCATCTCTGAGTCATGCCGCGGATCCGTCTGTCGTCATTCTTA
GCTCTCTCTCTCACTTTGAGGGATGATACTCATCAACATGGTGGGAGGAA
TGCGGCGCCCACCACATCCACGATCGAACATTAGGCCCTTACTCATTGAA
TGGTGTCCCTCTCCGCCGAGTCAATCAAGCCTATGTAATTGTCACCAGCC
AAGTGGTGGATATCTCAGCCGTCAAGGTGCCTGACACGTTGAATGATGCG
TATTTCGCGGTCCCGGCGGATGTCAAAGGCAAGGAGACGATCCTTGCCGC
TGGTGCGGGGAAGAAGGCGACTGAGGTGTCTGAGTCGCGCAAGAAGGACC
AGAAGGCGGTGGACGAGCAGGTGCTGGTAGCTGTCAAGAAGGTGGCGCAA
TTGGATGGGTACTTGAAGGCGCGATTTTCCTTGAAAAAGGGCGTGAAGCC
GCACGAGATCAAACTGTGAAGAAGGGGGGGCGGTATAGGTTCTTCGGCAA
GGGCGGGAAGAAGGCTGCGGCGCCCGCGCCTGCTGCGGGCAAGGCGCCTC
GCTTCTACCCGGCTGACGACATCCCTGTCCCTCGTCGCAGTGCGCGCCAC
ATTCAGAAACCGACCAAGCTTAAGGCAGGTATCAAGCCCGGTTCTGTGCT
GATTATGCTCGCTGGCCGGTTCCGTGGCAAGCGCGTGGTTTTCCTGAAGC
AGCTGGCGTCGGGCACGCTCCTCGTAACGGATGGCTCCGAAGAAAGCAAA
CAAGCGTGCAGGGAAGCCCCGCACAACCTTGCTGGCCCGTGGTGTCCCAT
CTCTGAGTCATGCCGCGGATCCGTCTGTCGTCATTCTTAGCTCTCTCTCT
CACTTTGAGGGATGATACTCATCAACATGGTGGGAGGAATGCGGCGCCCA
CCACATCCACGATCGAACATTAGGCCCTTACTCATTGAATGGTGTCCCTC
TCCGCCGAGTCAATCAAGCCTATGTAATTGTCACCAGCCAAGTGGTGGAT
ATCTCAGCCGTCAAGGTGCCTGACACGTTGAATGATGCGTATTTCGCGGT
CCCGGCGGATGTCAAAGGCAAGGAGACGATCCTTGCCGCTGGTGCGGGGA
AGAAGGCGACTGAGGTGTCTGAGTCGCGCAAGAAGGACCAGAAGGCGGTG
GACGAGCAGGTGCTGGTAGCTGTCAAGAAGGTGGCGCAATTGGATGGGTA
CTTGAAGGCGCGATTTTCCTTGAAAAAGGGCGTGAAGCCGCACGAGATCA
AACTGTGAAGAAGGGGGGGCGGTATAGGTTCTTCGGCAAGGGCGGGAAGA
AGGCTGCGGCGCCCGCGCCTGCTGCGGGCAAGGCGCCTCGCTTCTACCCG
GCTGACGACATCCCTGTCCCTCGTCGCAGTGCGCGCCACATTCAGAAACC
GACCAAGCTTAAGGCAGGTATCAAGCCCGGTTCTGTGCTGATTATGCTCG
CTGGCCGGTTCCGTGGCAAGCGCGTGGTTTTCCTGAAGCAGCTGGCGTCG
GGCACGCTCCTCGTAACGGATGGCTCCGAAGAAAGCAAACAAGCGTGCAG
GGAAGCCCCGCACAACCTTGCTGGCCCGTGGTGTCCCATCTCTGAGTCAT
GCCGCG

Synonyms

Publications