EWM21645.1, cds9082 (CDS) Nannochloropsis gaditana

Overview
NameEWM21645.1
Unique Namecds9082
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:362147..362233 -
Alignment locationKK037251.1:361766..362033 -
Alignment locationKK037251.1:360795..361122 -
Alignment locationKK037251.1:360604..360709 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21645.1
Product60s ribosomal protein l6
Orig transcript idgnl|cribi|Naga_100012g62.1977.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:362147..362233 -
KK037251.1supercontigKK037251.1:361766..362033 -
KK037251.1supercontigKK037251.1:360795..361122 -
KK037251.1supercontigKK037251.1:360604..360709 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like
IPR00091560S_ribosomal_L6E
IPR014722Rib_L2_dom2
Homology
BLAST of EWM21645.1 vs. NCBI_GenBank
Match: gi|585101900|gb|EWM21645.1| (60s ribosomal protein l6 [Nannochloropsis gaditana])

HSP 1 Score: 520.005 bits (1338), Expect = 0.000e+0
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0
Query:    1 MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGGKKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPADVKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEIKIRLSSFLALSLTLRDDTHQHGGRNAAPTTSTIEH 262
            MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGGKKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPADVKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEIKIRLSSFLALSLTLRDDTHQHGGRNAAPTTSTIEH
Sbjct:    1 MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGGKKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPADVKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEIKIRLSSFLALSLTLRDDTHQHGGRNAAPTTSTIEH 262          
BLAST of EWM21645.1 vs. NCBI_GenBank
Match: gi|553185166|ref|XP_005854211.1| (large subunit ribosomal protein L6e [Nannochloropsis gaditana CCMP526] >gi|422294850|gb|EKU22150.1| large subunit ribosomal protein L6e [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 448.743 bits (1153), Expect = 1.229e-158
Identity = 228/229 (99.56%), Postives = 228/229 (99.56%), Query Frame = 0
Query:    1 MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGGKKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPADVKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEIKI 229
            MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGGKKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPADVKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEIK 
Sbjct:    1 MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGGKKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPADVKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEIKF 229          
BLAST of EWM21645.1 vs. NCBI_GenBank
Match: gi|597991187|ref|XP_007366018.1| (60S ribosomal protein L6 [Dichomitus squalens LYAD-421 SS1] >gi|395328799|gb|EJF61189.1| 60S ribosomal protein L6 [Dichomitus squalens LYAD-421 SS1])

HSP 1 Score: 197.978 bits (502), Expect = 1.501e-59
Identity = 118/238 (49.58%), Postives = 147/238 (61.76%), Query Frame = 0
Query:   14 RTTLLARGVPSLSHAATVKKGGRYRFFGKGGKKAAAPAPAAG------------------KAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPADVKG----KETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEIKI 229
            R+  +A GV  LS +A   + G ++   K  K AAA  PA                    KAPRFYPA+D+  P++S R   KP KL++ I PG+VLI+LAGRFRGKRVVFLKQLASG LLVTGPY +NGVPLRRVNQAYVI TS  +D+   KV + +NDAYFA PA  KG    +E   + G  K+ T   ES+  DQKAVD  V+ A+KK   L+ Y+KA F L KG  PH++  
Sbjct:    3 RSKEIAPGVGRLSRSAVYARRGLFKGQKKTEKPAAAETPATKEVSVGGEKNGSTRIVPTKKAPRFYPAEDVRQPKKS-RKSPKPAKLRSSITPGTVLILLAGRFRGKRVVFLKQLASGLLLVTGPYKVNGVPLRRVNQAYVIATSTKLDLGDFKVDEKINDAYFAKPA-TKGSRSAEEEFFSEGKPKEKTPFPESKAADQKAVDGAVIAAIKKTEYLEKYVKATFGLSKGQFPHQLNF 238          
BLAST of EWM21645.1 vs. NCBI_GenBank
Match: gi|1024019177|gb|KZV37315.1| (hypothetical protein F511_01183 [Dorcoceras hygrometricum])

HSP 1 Score: 195.667 bits (496), Expect = 8.785e-59
Identity = 117/235 (49.79%), Postives = 146/235 (62.13%), Query Frame = 0
Query:    1 MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGG------KKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPADVKGK--ETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEI 227
            MAPK+   RA   R   L RG+   S + T  K G +    K G      +KAA  AP A K  +FYPADD+  P  + R   KPTKL+A I PG+VLI+LAGRF+GKRVVFLKQL SG LLVTGP+ +NGVPLRRVNQ+YVI TS  VD+S V + D  +D YFA   + K K  E        +  T +   +K DQKA+D  +L A++ V +L  YL ARFSLK G+KPHE+
Sbjct:    1 MAPKQTVPRAT--RNPELTRGIRKHSRSVTYHKRGLWAIKQKNGGKFPHHEKAAEAAPVAEKPQKFYPADDVKKPLSNKRK-PKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLTSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVSGVNL-DKFDDKYFAKQVEKKQKKGENEFFEAEKQDKTALPTEKKDDQKAIDASLLKAIESVPELKAYLGARFSLKAGMKPHEL 231          
BLAST of EWM21645.1 vs. NCBI_GenBank
Match: gi|828315186|ref|XP_012571873.1| (PREDICTED: 60S ribosomal protein L6-2-like isoform X1 [Cicer arietinum])

HSP 1 Score: 194.126 bits (492), Expect = 4.238e-58
Identity = 118/236 (50.00%), Postives = 147/236 (62.29%), Query Frame = 0
Query:    1 MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGG----KKAAAPAPAA--GKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPAD---VKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEI 227
            MAPK+   R    R   L RG+   S +A   K G +    K G    K    P P A   KAP+FYPADD+  P R+ +H  KPTKL+A I PG+VLI+LAGRF+GKRVVFLKQL SG LLVTGP+ +NGVPLRRVNQ+YVI TS  VD+S+V V D  +D YF+  A+    KG+     +    K   + + +K DQK VD  +L A++ V  L  YL ARFSLK GVKPHE+
Sbjct:    1 MAPKQRTARVS--RNPDLIRGIGKYSKSAMYHKRGLWAIKAKHGGAFPKHDPKPKPEAPAEKAPKFYPADDVKKPLRN-KHKPKPTKLRANITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVSSVNV-DKFDDKYFSKEAEKKKTKGEGEFFDSEKEDKKV-LPQEKKDDQKTVDSSLLKAIETVPDLKTYLGARFSLKSGVKPHEL 231          
BLAST of EWM21645.1 vs. NCBI_GenBank
Match: gi|747045823|ref|XP_011096185.1| (60S ribosomal protein L6-like [Sesamum indicum])

HSP 1 Score: 192.586 bits (488), Expect = 1.158e-57
Identity = 121/236 (51.27%), Postives = 148/236 (62.71%), Query Frame = 0
Query:    1 MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGG------KKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPAD---VKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEI 227
            MAPK+      + R   L  GV  +S +    K G +    K G      +KA A AP A K P+FYPADD+  P  + R   KPTKL+A I PG+VLI+L+GRF+GKRVVFLKQL+SG LLVTGPY +NGVPLRRVNQAYVI TS  VDIS V V +  +D YFA   +    KG+     A   +K T  +E +K DQKAVD  +L AV+ V  L  YL ARFSLK G+KPHE+
Sbjct:    1 MAPKQ------RTRNPELIPGVRKVSRSKMYHKRGLWAIKAKNGGKFPHHEKAPAAAPVAEKPPKFYPADDVKKPLSNKRK-PKPTKLRASITPGTVLIILSGRFKGKRVVFLKQLSSGLLLVTGPYKINGVPLRRVNQAYVIATSTKVDISGVNV-EKFDDKYFAKQVEKKKKKGENEFFEAEKQEKNTLPAE-KKDDQKAVDAPLLKAVESVPDLKAYLGARFSLKAGMKPHEL 227          
BLAST of EWM21645.1 vs. NCBI_GenBank
Match: gi|848913631|ref|XP_012854870.1| (PREDICTED: 60S ribosomal protein L6-like [Erythranthe guttata] >gi|604303308|gb|EYU22781.1| hypothetical protein MIMGU_mgv1a013134mg [Erythranthe guttata])

HSP 1 Score: 192.586 bits (488), Expect = 1.334e-57
Identity = 116/235 (49.36%), Postives = 147/235 (62.55%), Query Frame = 0
Query:    1 MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGG------KKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPADVKGKETI--LAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEI 227
            MAPK+      + R   L  GV  +S +A   K G +    K G      +KA A AP A K P+FYPADDI  P  + R   KPTKL+A I PG+VLI+L+GRF+GKRVVFLKQL+SG LLVTGPY +NGVPLRRVNQAYVI TS  VD+S V V +  +D YFA   + K ++T      G  ++   +   +K DQK VD  +L  ++ V +L  YL ARFSLK G+KPHE+
Sbjct:    1 MAPKQ------RTRNPELIPGVRKVSRSAMYHKRGLWAIKAKNGGKFPHHEKAVAAAPVAEKPPKFYPADDIKKPLSNTRK-AKPTKLRASITPGTVLIILSGRFKGKRVVFLKQLSSGLLLVTGPYKINGVPLRRVNQAYVIGTSTKVDLSGVNV-EKFDDKYFAKQVEKKKEKTEAGFFKGQEEEKNSLPTEKKDDQKTVDAALLKTLETVPELKAYLGARFSLKAGMKPHEL 227          
BLAST of EWM21645.1 vs. NCBI_GenBank
Match: gi|694327667|ref|XP_009354690.1| (PREDICTED: 60S ribosomal protein L6-1-like [Pyrus x bretschneideri])

HSP 1 Score: 192.2 bits (487), Expect = 2.328e-57
Identity = 116/236 (49.15%), Postives = 149/236 (63.14%), Query Frame = 0
Query:    1 MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGG-------KKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFA--VPADVKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEI 227
            MAPK+   +    R   L RG+   S +    K G +    K G       KK AA APA  K P+FYPADD+  P  + R   KPTKL+A I PG+VLI+LAGRF+GKRVVFLKQL+SG LLVTGP+ +NGVPLRRVNQ+YVI TS  +DIS V V D  +D YFA  V A  K  E        +    + + +K+DQKAVD  ++ +++K++ L  YL ARFSLK+G+KPHE+
Sbjct:    1 MAPKQRTPKVT--RNPDLIRGIGKYSRSKMYHKRGLWAIKAKNGGTFPCHDKKPAADAPAV-KPPKFYPADDVKKPLVNKRK-PKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKIDISGVNV-DKFDDKYFAKEVQAKKKKGEGEFFEAEKEDKNVLPQEKKEDQKAVDTPLINSIEKISDLKTYLAARFSLKQGMKPHEL 231          
BLAST of EWM21645.1 vs. NCBI_GenBank
Match: gi|599103557|ref|XP_007381947.1| (hypothetical protein PUNSTDRAFT_51072 [Punctularia strigosozonata HHB-11173 SS5] >gi|390601041|gb|EIN10435.1| hypothetical protein PUNSTDRAFT_51072 [Punctularia strigosozonata HHB-11173 SS5])

HSP 1 Score: 192.2 bits (487), Expect = 2.684e-57
Identity = 113/235 (48.09%), Postives = 139/235 (59.15%), Query Frame = 0
Query:   14 RTTLLARGVPSLSHAATVKKGGRYRFFGKGGKKAAAPAPA------------------AGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVP---ADVKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEI 227
            R+  +A GV  LS +    K G ++   K   K AA  PA                    KA RFYP+DD+  P++S R + KPTKL++ I PG+VLI+LAGRFRGKRVVFLKQL SG LLVTGPY +NGVPLRRV QAYVI TS  VD+   KV + +NDAYFA P   A    +E   + G  K+     ES+  DQK VD+ V+ AV K   L  YLK+ F L KG  PHE+
Sbjct:    3 RSKEIAPGVGRLSRSQVFAKRGLFKGVKKSETKPAAETPAYKEVPVKGEKNGGTRLVPTSKASRFYPSDDVRQPKKS-RKVAKPTKLRSSITPGTVLILLAGRFRGKRVVFLKQLDSGLLLVTGPYKVNGVPLRRVAQAYVIATSTKVDLGDYKVDEKINDAYFAKPSSKAKTSAEEEFFSEGKPKEKEAFPESKAADQKEVDKAVIAAVAKTENLAKYLKSTFGLSKGQFPHEL 236          
BLAST of EWM21645.1 vs. NCBI_GenBank
Match: gi|357464351|ref|XP_003602457.1| (60S ribosomal L6-like protein [Medicago truncatula] >gi|355491505|gb|AES72708.1| 60S ribosomal L6-like protein [Medicago truncatula])

HSP 1 Score: 191.815 bits (486), Expect = 2.924e-57
Identity = 117/235 (49.79%), Postives = 143/235 (60.85%), Query Frame = 0
Query:    1 MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGG------KKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPADVKGK--ETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEI 227
            MAPK+   R    R   L RG+   S +A   K G +    K G         A PA    K P+FYPADD+  P R+ +H  KPTKL+A I PG+VLI+LAGRF+GKRVVFLKQL SG LLVTGP+ +NGVPLRRVNQAYVI TS  VDIS+V V D  +D YF+  +  K K  E+       +    + + +K DQK VD  +L A+  V  L  YL ARFSLK GVKPHE+
Sbjct:    1 MAPKQRTARVS--RNPELIRGIGKYSRSAMYHKRGLWAIKAKHGGAFPRHDPVAKPAAPVEKPPKFYPADDVKKPLRN-KHRPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISSVNV-DKFDDKYFSKESQKKTKKGESEFFEADKEDKKVLPQEKKDDQKTVDAGLLKAIDSVPDLKTYLGARFSLKAGVKPHEL 231          
The following BLAST results are available for this feature:
BLAST of EWM21645.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101900|gb|EWM21645.1|0.000e+0100.0060s ribosomal protein l6 [Nannochloropsis gaditana... [more]
gi|553185166|ref|XP_005854211.1|1.229e-15899.56large subunit ribosomal protein L6e [Nannochlorops... [more]
gi|597991187|ref|XP_007366018.1|1.501e-5949.5860S ribosomal protein L6 [Dichomitus squalens LYAD... [more]
gi|1024019177|gb|KZV37315.1|8.785e-5949.79hypothetical protein F511_01183 [Dorcoceras hygrom... [more]
gi|828315186|ref|XP_012571873.1|4.238e-5850.00PREDICTED: 60S ribosomal protein L6-2-like isoform... [more]
gi|747045823|ref|XP_011096185.1|1.158e-5751.2760S ribosomal protein L6-like [Sesamum indicum][more]
gi|848913631|ref|XP_012854870.1|1.334e-5749.36PREDICTED: 60S ribosomal protein L6-like [Erythran... [more]
gi|694327667|ref|XP_009354690.1|2.328e-5749.15PREDICTED: 60S ribosomal protein L6-1-like [Pyrus ... [more]
gi|599103557|ref|XP_007381947.1|2.684e-5748.09hypothetical protein PUNSTDRAFT_51072 [Punctularia... [more]
gi|357464351|ref|XP_003602457.1|2.924e-5749.7960S ribosomal L6-like protein [Medicago truncatula... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9112rna9112Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications