EWM21645.1, cds9082 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21645.1 vs. NCBI_GenBank
Match: gi|585101900|gb|EWM21645.1| (60s ribosomal protein l6 [Nannochloropsis gaditana]) HSP 1 Score: 520.005 bits (1338), Expect = 0.000e+0 Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0
Query: 1 MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGGKKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPADVKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEIKIRLSSFLALSLTLRDDTHQHGGRNAAPTTSTIEH 262
MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGGKKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPADVKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEIKIRLSSFLALSLTLRDDTHQHGGRNAAPTTSTIEH
Sbjct: 1 MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGGKKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPADVKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEIKIRLSSFLALSLTLRDDTHQHGGRNAAPTTSTIEH 262
BLAST of EWM21645.1 vs. NCBI_GenBank
Match: gi|553185166|ref|XP_005854211.1| (large subunit ribosomal protein L6e [Nannochloropsis gaditana CCMP526] >gi|422294850|gb|EKU22150.1| large subunit ribosomal protein L6e [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 448.743 bits (1153), Expect = 1.229e-158 Identity = 228/229 (99.56%), Postives = 228/229 (99.56%), Query Frame = 0
Query: 1 MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGGKKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPADVKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEIKI 229
MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGGKKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPADVKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEIK
Sbjct: 1 MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGGKKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPADVKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEIKF 229
BLAST of EWM21645.1 vs. NCBI_GenBank
Match: gi|597991187|ref|XP_007366018.1| (60S ribosomal protein L6 [Dichomitus squalens LYAD-421 SS1] >gi|395328799|gb|EJF61189.1| 60S ribosomal protein L6 [Dichomitus squalens LYAD-421 SS1]) HSP 1 Score: 197.978 bits (502), Expect = 1.501e-59 Identity = 118/238 (49.58%), Postives = 147/238 (61.76%), Query Frame = 0
Query: 14 RTTLLARGVPSLSHAATVKKGGRYRFFGKGGKKAAAPAPAAG------------------KAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPADVKG----KETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEIKI 229
R+ +A GV LS +A + G ++ K K AAA PA KAPRFYPA+D+ P++S R KP KL++ I PG+VLI+LAGRFRGKRVVFLKQLASG LLVTGPY +NGVPLRRVNQAYVI TS +D+ KV + +NDAYFA PA KG +E + G K+ T ES+ DQKAVD V+ A+KK L+ Y+KA F L KG PH++
Sbjct: 3 RSKEIAPGVGRLSRSAVYARRGLFKGQKKTEKPAAAETPATKEVSVGGEKNGSTRIVPTKKAPRFYPAEDVRQPKKS-RKSPKPAKLRSSITPGTVLILLAGRFRGKRVVFLKQLASGLLLVTGPYKVNGVPLRRVNQAYVIATSTKLDLGDFKVDEKINDAYFAKPA-TKGSRSAEEEFFSEGKPKEKTPFPESKAADQKAVDGAVIAAIKKTEYLEKYVKATFGLSKGQFPHQLNF 238
BLAST of EWM21645.1 vs. NCBI_GenBank
Match: gi|1024019177|gb|KZV37315.1| (hypothetical protein F511_01183 [Dorcoceras hygrometricum]) HSP 1 Score: 195.667 bits (496), Expect = 8.785e-59 Identity = 117/235 (49.79%), Postives = 146/235 (62.13%), Query Frame = 0
Query: 1 MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGG------KKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPADVKGK--ETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEI 227
MAPK+ RA R L RG+ S + T K G + K G +KAA AP A K +FYPADD+ P + R KPTKL+A I PG+VLI+LAGRF+GKRVVFLKQL SG LLVTGP+ +NGVPLRRVNQ+YVI TS VD+S V + D +D YFA + K K E + T + +K DQKA+D +L A++ V +L YL ARFSLK G+KPHE+
Sbjct: 1 MAPKQTVPRAT--RNPELTRGIRKHSRSVTYHKRGLWAIKQKNGGKFPHHEKAAEAAPVAEKPQKFYPADDVKKPLSNKRK-PKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLTSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVSGVNL-DKFDDKYFAKQVEKKQKKGENEFFEAEKQDKTALPTEKKDDQKAIDASLLKAIESVPELKAYLGARFSLKAGMKPHEL 231
BLAST of EWM21645.1 vs. NCBI_GenBank
Match: gi|828315186|ref|XP_012571873.1| (PREDICTED: 60S ribosomal protein L6-2-like isoform X1 [Cicer arietinum]) HSP 1 Score: 194.126 bits (492), Expect = 4.238e-58 Identity = 118/236 (50.00%), Postives = 147/236 (62.29%), Query Frame = 0
Query: 1 MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGG----KKAAAPAPAA--GKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPAD---VKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEI 227
MAPK+ R R L RG+ S +A K G + K G K P P A KAP+FYPADD+ P R+ +H KPTKL+A I PG+VLI+LAGRF+GKRVVFLKQL SG LLVTGP+ +NGVPLRRVNQ+YVI TS VD+S+V V D +D YF+ A+ KG+ + K + + +K DQK VD +L A++ V L YL ARFSLK GVKPHE+
Sbjct: 1 MAPKQRTARVS--RNPDLIRGIGKYSKSAMYHKRGLWAIKAKHGGAFPKHDPKPKPEAPAEKAPKFYPADDVKKPLRN-KHKPKPTKLRANITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVSSVNV-DKFDDKYFSKEAEKKKTKGEGEFFDSEKEDKKV-LPQEKKDDQKTVDSSLLKAIETVPDLKTYLGARFSLKSGVKPHEL 231
BLAST of EWM21645.1 vs. NCBI_GenBank
Match: gi|747045823|ref|XP_011096185.1| (60S ribosomal protein L6-like [Sesamum indicum]) HSP 1 Score: 192.586 bits (488), Expect = 1.158e-57 Identity = 121/236 (51.27%), Postives = 148/236 (62.71%), Query Frame = 0
Query: 1 MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGG------KKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPAD---VKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEI 227
MAPK+ + R L GV +S + K G + K G +KA A AP A K P+FYPADD+ P + R KPTKL+A I PG+VLI+L+GRF+GKRVVFLKQL+SG LLVTGPY +NGVPLRRVNQAYVI TS VDIS V V + +D YFA + KG+ A +K T +E +K DQKAVD +L AV+ V L YL ARFSLK G+KPHE+
Sbjct: 1 MAPKQ------RTRNPELIPGVRKVSRSKMYHKRGLWAIKAKNGGKFPHHEKAPAAAPVAEKPPKFYPADDVKKPLSNKRK-PKPTKLRASITPGTVLIILSGRFKGKRVVFLKQLSSGLLLVTGPYKINGVPLRRVNQAYVIATSTKVDISGVNV-EKFDDKYFAKQVEKKKKKGENEFFEAEKQEKNTLPAE-KKDDQKAVDAPLLKAVESVPDLKAYLGARFSLKAGMKPHEL 227
BLAST of EWM21645.1 vs. NCBI_GenBank
Match: gi|848913631|ref|XP_012854870.1| (PREDICTED: 60S ribosomal protein L6-like [Erythranthe guttata] >gi|604303308|gb|EYU22781.1| hypothetical protein MIMGU_mgv1a013134mg [Erythranthe guttata]) HSP 1 Score: 192.586 bits (488), Expect = 1.334e-57 Identity = 116/235 (49.36%), Postives = 147/235 (62.55%), Query Frame = 0
Query: 1 MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGG------KKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPADVKGKETI--LAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEI 227
MAPK+ + R L GV +S +A K G + K G +KA A AP A K P+FYPADDI P + R KPTKL+A I PG+VLI+L+GRF+GKRVVFLKQL+SG LLVTGPY +NGVPLRRVNQAYVI TS VD+S V V + +D YFA + K ++T G ++ + +K DQK VD +L ++ V +L YL ARFSLK G+KPHE+
Sbjct: 1 MAPKQ------RTRNPELIPGVRKVSRSAMYHKRGLWAIKAKNGGKFPHHEKAVAAAPVAEKPPKFYPADDIKKPLSNTRK-AKPTKLRASITPGTVLIILSGRFKGKRVVFLKQLSSGLLLVTGPYKINGVPLRRVNQAYVIGTSTKVDLSGVNV-EKFDDKYFAKQVEKKKEKTEAGFFKGQEEEKNSLPTEKKDDQKTVDAALLKTLETVPELKAYLGARFSLKAGMKPHEL 227
BLAST of EWM21645.1 vs. NCBI_GenBank
Match: gi|694327667|ref|XP_009354690.1| (PREDICTED: 60S ribosomal protein L6-1-like [Pyrus x bretschneideri]) HSP 1 Score: 192.2 bits (487), Expect = 2.328e-57 Identity = 116/236 (49.15%), Postives = 149/236 (63.14%), Query Frame = 0
Query: 1 MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGG-------KKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFA--VPADVKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEI 227
MAPK+ + R L RG+ S + K G + K G KK AA APA K P+FYPADD+ P + R KPTKL+A I PG+VLI+LAGRF+GKRVVFLKQL+SG LLVTGP+ +NGVPLRRVNQ+YVI TS +DIS V V D +D YFA V A K E + + + +K+DQKAVD ++ +++K++ L YL ARFSLK+G+KPHE+
Sbjct: 1 MAPKQRTPKVT--RNPDLIRGIGKYSRSKMYHKRGLWAIKAKNGGTFPCHDKKPAADAPAV-KPPKFYPADDVKKPLVNKRK-PKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKIDISGVNV-DKFDDKYFAKEVQAKKKKGEGEFFEAEKEDKNVLPQEKKEDQKAVDTPLINSIEKISDLKTYLAARFSLKQGMKPHEL 231
BLAST of EWM21645.1 vs. NCBI_GenBank
Match: gi|599103557|ref|XP_007381947.1| (hypothetical protein PUNSTDRAFT_51072 [Punctularia strigosozonata HHB-11173 SS5] >gi|390601041|gb|EIN10435.1| hypothetical protein PUNSTDRAFT_51072 [Punctularia strigosozonata HHB-11173 SS5]) HSP 1 Score: 192.2 bits (487), Expect = 2.684e-57 Identity = 113/235 (48.09%), Postives = 139/235 (59.15%), Query Frame = 0
Query: 14 RTTLLARGVPSLSHAATVKKGGRYRFFGKGGKKAAAPAPA------------------AGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVP---ADVKGKETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEI 227
R+ +A GV LS + K G ++ K K AA PA KA RFYP+DD+ P++S R + KPTKL++ I PG+VLI+LAGRFRGKRVVFLKQL SG LLVTGPY +NGVPLRRV QAYVI TS VD+ KV + +NDAYFA P A +E + G K+ ES+ DQK VD+ V+ AV K L YLK+ F L KG PHE+
Sbjct: 3 RSKEIAPGVGRLSRSQVFAKRGLFKGVKKSETKPAAETPAYKEVPVKGEKNGGTRLVPTSKASRFYPSDDVRQPKKS-RKVAKPTKLRSSITPGTVLILLAGRFRGKRVVFLKQLDSGLLLVTGPYKVNGVPLRRVAQAYVIATSTKVDLGDYKVDEKINDAYFAKPSSKAKTSAEEEFFSEGKPKEKEAFPESKAADQKEVDKAVIAAVAKTENLAKYLKSTFGLSKGQFPHEL 236
BLAST of EWM21645.1 vs. NCBI_GenBank
Match: gi|357464351|ref|XP_003602457.1| (60S ribosomal L6-like protein [Medicago truncatula] >gi|355491505|gb|AES72708.1| 60S ribosomal L6-like protein [Medicago truncatula]) HSP 1 Score: 191.815 bits (486), Expect = 2.924e-57 Identity = 117/235 (49.79%), Postives = 143/235 (60.85%), Query Frame = 0
Query: 1 MAPKKANKRAGKPRTTLLARGVPSLSHAATVKKGGRYRFFGKGG------KKAAAPAPAAGKAPRFYPADDIPVPRRSARHIQKPTKLKAGIKPGSVLIMLAGRFRGKRVVFLKQLASGTLLVTGPYSLNGVPLRRVNQAYVIVTSQVVDISAVKVPDTLNDAYFAVPADVKGK--ETILAAGAGKKATEVSESRKKDQKAVDEQVLVAVKKVAQLDGYLKARFSLKKGVKPHEI 227
MAPK+ R R L RG+ S +A K G + K G A PA K P+FYPADD+ P R+ +H KPTKL+A I PG+VLI+LAGRF+GKRVVFLKQL SG LLVTGP+ +NGVPLRRVNQAYVI TS VDIS+V V D +D YF+ + K K E+ + + + +K DQK VD +L A+ V L YL ARFSLK GVKPHE+
Sbjct: 1 MAPKQRTARVS--RNPELIRGIGKYSRSAMYHKRGLWAIKAKHGGAFPRHDPVAKPAAPVEKPPKFYPADDVKKPLRN-KHRPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISSVNV-DKFDDKYFSKESQKKTKKGESEFFEADKEDKKVLPQEKKDDQKTVDAGLLKAIDSVPDLKTYLGARFSLKAGVKPHEL 231 The following BLAST results are available for this feature:
BLAST of EWM21645.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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