rna9108, rna9108 (mRNA) Nannochloropsis gaditana

Overview
Namerna9108
Unique Namerna9108
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1014
Alignment locationKK037251.1:351400..352589 +

Link to JBrowse

Properties
Property NameValue
Producthistone-fold-containing protein
Orig transcript idgnl|cribi|Naga_100012g58.1903.mrna
Orig protein idgnl|cribi|Naga_100012g58.1903
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:351400..352589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100012g58gene8831Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9108rna9108-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21571.1cds9078Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9108 ID=rna9108|Name=rna9108|organism=Nannochloropsis gaditana|type=mRNA|length=1014bp
CCCAGCAACAAATTTGTAGTGCGGCTCTTAGTTTCTCCCGTGATCTGCTT
GTCATGTTGTTTGTAGAGTCGCATACAGTATCACTGTGCATCCTTATCGC
TAAGAACCACTTCGCACCATACGTCCTTGAGCCTTTCCAATGTTACCTCT
GATTCAGTCGCACGGTGCCACCCTGAGTCCGTAGCCGTCTCAAGCATTTG
CTCTTCATAGCAGTTGCCCCCAGGCTTCACACACAATACGCCTGGTCGGC
ATCACAATTTGCCATTTAGGCTTGAGTCTCAATGCAATCTGGTTGGAGAC
CTAGGAGCGCATGTATCACCGTGGTGCAGTGCTCTTGCCTACTTTTGACA
CTCCTTCCTCACATCTGTCCCCTTTTTCCCGCCCATTTTACCAGACCTTT
TCAAACCTTACCATCCTAACACAATGGCCAAGACCCCCTCTAAGAAGTCC
GCCAAGGCCCCTAAGAAGGCAGGCAAGGGCACCAAGAAGAAGACCCGCGT
GGAGAGCTATGGCTCCTACATCTACAAGGTGCTCAAGCAGGTGCATCCCG
ACACTGGTATCTCCAAGCGTGGTGTTTCCATCCTGAACTCCTTCATCGGT
GACATTTTCGACCGCCTCGCCACGGAGGCTGGCAAGCTGGCTCGTTACAC
CAAGAAGTCCACCCTCTCCTCCCGCGAGATCCAGACGGCTGTCCGCCTGA
CGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCAAGGCT
GTCACCAAGTACACGAGCTCCTCCTAAGAGACTTGTGCTCTAATTCCTAC
CGCAGCTCACGCGACTCGTGGTAAAAAAAAATTCGAAAAAAACAATTCCA
ACTGGGTTCCTTTAGAACCCCTCAACAAACTCAACAAGCGCCTTATTTGC
TACTCGGACACGGGTCGATATCCTTTTCTTCCTTCACTGAAAATTGTTGT
GCACTTTTAATCACAGTCTTCTACTCATACGAGAAAAGAATAGTTTTCGA
TCATTGATATCAGG
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protein sequence of rna9108

>rna9108-protein ID=rna9108-protein|Name=rna9108|organism=Nannochloropsis gaditana|type=polypeptide|length=135bp
MAGKGKSGRGGGKKGGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAP
VYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLG
GVTIASGGVLPNIHSVLLPKSKGKKSGKGSASQDY
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mRNA from alignment at KK037251.1:351400..352589+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9108 ID=rna9108|Name=rna9108|organism=Nannochloropsis gaditana|type=mRNA|length=1190bp|location=Sequence derived from alignment at KK037251.1:351400..352589+ (Nannochloropsis gaditana)
TTTCTCTTTTATCGTTTCAACTCAGCACGATGCCTTGTTGATTTGGCATA
TACATGTCTCATCAAGTAATTGGACTGTAGCACAACATTAATCCTATCGT
CACCGTCATTTCGTCGTGCAAATTTCTTTTGTACTCCTCTGAGCTGGCAC
CAACATGATTCTGGAGTGTCTTGAGATCCTCGCGTGCTCGAAGGGGTCCA
ATTCTTACCACATCTCATTGTTCGAGACAGTGCAGTGCTCAAAAGTGATG
TGCGATATTTTGtggacatggacgaggaacCGAATTCTTGACATCCCCTT
CCCATCGTGCAGGAATCTCCTCAAGACACTAGCAAAATATGGCTGGCAAA
GGCAAAAGTGGCCGCGGCGGTGGCAAGAAAGGAGGCGTTTCTCGTTCCTC
CAAAGCAGGCCTTCAATTTCCAGTCGGCAGGATTTCCCGCTTTTTGAAGA
AGGGACGTTATGCCGCGCGTGTCGGGTCCGGCGCTCCCGTGTACCTGGCT
GCCGTGCTGGAGTACCTGACGGCTGAGATCTTGGAACTGGCTGGTAACGC
CGCCCGCGACAACAAGAAGACCCGGATCATTCCCCGTCACGTCCAACTGG
CTGTCCGCAACGATGAGGAGCTGAACAAGTTGCTCGGCGGTGTGACCATT
GCTTCTGGTGGCGTGCTTCCCAATATTCACTCTGGTAAGGATGTAGACCT
GTATTGGAAAAGTAGAAACGTGAACTTGATGGGATGTGATGTAGTAAGAC
TCGGTCGCTTTCTACTTGAACATGAGCGTCGACCCACATCACGATGCACC
GCTATTTCAATCGCCCATTCACAGTGCTCCTTCCAAAGTctaagggaaag
aagagtgGCAAGGGATCTGCTTCGCAGGACTACTAATTGGTGGCCAGAGC
AAGAAATTTCCTCGTACGAGAGCGCGAGCCGAGGTGTGAAATTCTTAGAA
AAACATTTCTTGTCACCTTTCAAAAGACTTTACGACCGTTGTGACCACCG
ATTGTACATTGACCCGTTTCGTAGCTTGCCTTACGTTCCTTTGCTCTCAA
GTTATGTTATTCGTCTGGACtacccttctctttcctagACGCATCATGCT
GATACAAGAGCAGAATGAATACGAAAGAGGCTGTAGCAAGTAAATGTCAA
GTGAGGCCGTCGTCCGCGACAAAATTTCGACGCTCTAATT
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Coding sequence (CDS) from alignment at KK037251.1:351400..352589+

>rna9108 ID=rna9108|Name=rna9108|organism=Nannochloropsis gaditana|type=CDS|length=816bp|location=Sequence derived from alignment at KK037251.1:351400..352589+ (Nannochloropsis gaditana)
ATGGCTGGCAAAGGCAAAAGTGGCCGCGGCGGTGGCAAGAAAGGAGGCGT
TTCTCGTTCCTCCAAAGCAGGCCTTCAATTTCCAGTCGGCAGGATTTCCC
GCTTTTTGAAGAAGGGACGTTATGCCGCGCGTGTCGGGTCCGGCGCTCCC
GTGTACCTGGCTGCCGTGCTGGAGTACCTGACGGCTGAGATCTTGGAACT
GGCTGGTAACGCCGCCCGCGACAACAAGAAGACCCGGATCATTCCCCGTC
ACGTCCAACTGGCTGTCCGCAACGATGAGGAGCTGAACAAGTTGCTCGGC
GGTGTGACCATTGCTTCTGGTGGCGTGCTTCCCAATATTCACTCTGTGCT
CCTTCCAAAGTctaagggaaagaagagtgGCAAGGGATCTGCTTCGCAGG
ACTACTAAATGGCTGGCAAAGGCAAAAGTGGCCGCGGCGGTGGCAAGAAA
GGAGGCGTTTCTCGTTCCTCCAAAGCAGGCCTTCAATTTCCAGTCGGCAG
GATTTCCCGCTTTTTGAAGAAGGGACGTTATGCCGCGCGTGTCGGGTCCG
GCGCTCCCGTGTACCTGGCTGCCGTGCTGGAGTACCTGACGGCTGAGATC
TTGGAACTGGCTGGTAACGCCGCCCGCGACAACAAGAAGACCCGGATCAT
TCCCCGTCACGTCCAACTGGCTGTCCGCAACGATGAGGAGCTGAACAAGT
TGCTCGGCGGTGTGACCATTGCTTCTGGTGGCGTGCTTCCCAATATTCAC
TCTGTGCTCCTTCCAAAGTctaagggaaagaagagtgGCAAGGGATCTGC
TTCGCAGGACTACTAA
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Synonyms
Publications