EWM21571.1, cds9078 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21571.1 vs. NCBI_GenBank
Match: gi|585101826|gb|EWM21571.1| (histone-fold-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 263.848 bits (673), Expect = 3.414e-89 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
Query: 1 MAGKGKSGRGGGKKGGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKKSGKGSASQDY 135
MAGKGKSGRGGGKKGGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKKSGKGSASQDY
Sbjct: 1 MAGKGKSGRGGGKKGGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKKSGKGSASQDY 135
BLAST of EWM21571.1 vs. NCBI_GenBank
Match: gi|585112216|gb|EWM29644.1| (histone-fold-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 216.853 bits (551), Expect = 1.006e-70 Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0
Query: 17 VSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKKSG 127
VSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPK+K KKS
Sbjct: 16 VSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKSA 126
BLAST of EWM21571.1 vs. NCBI_GenBank
Match: gi|695377830|ref|XP_009516110.1| (hypothetical protein PHYSODRAFT_322459 [Phytophthora sojae] >gi|348689021|gb|EGZ28835.1| hypothetical protein PHYSODRAFT_322459 [Phytophthora sojae]) HSP 1 Score: 212.231 bits (539), Expect = 1.253e-68 Identity = 112/141 (79.43%), Postives = 124/141 (87.94%), Query Frame = 0
Query: 1 MAGKGKSGRGG-GKKGGVS--RSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPK---SKGKKSGKGSASQDY 135
M+GKGK+ GG GKK G S RS+KAGLQFPVGR++R+L+KGRYA R GSGAPVY+AAVLEYL AEILELAGNAARD+KKTRIIPRH+Q+AVRNDEELNKLLG VTIASGGV+PNIHSVLLPK S GKK GK SASQDY
Sbjct: 1 MSGKGKAATGGRGKKTGKSSTRSAKAGLQFPVGRVARYLRKGRYAQRTGSGAPVYMAAVLEYLCAEILELAGNAARDHKKTRIIPRHIQMAVRNDEELNKLLGDVTIASGGVMPNIHSVLLPKKSASAGKK-GKASASQDY 140
BLAST of EWM21571.1 vs. NCBI_GenBank
Match: gi|301118386|ref|XP_002906921.1| (histone H2A type 1 [Phytophthora infestans T30-4] >gi|675173405|ref|XP_008895587.1| histone H2A.X [Phytophthora parasitica INRA-310] >gi|262108270|gb|EEY66322.1| histone H2A type 1 [Phytophthora infestans T30-4] >gi|568105123|gb|ETN19768.1| histone H2A.X [Phytophthora parasitica INRA-310] >gi|570319097|gb|ETO67045.1| histone H2A.X [Phytophthora parasitica P1976] >gi|970633721|gb|KUF79260.1| Histone H2A [Phytophthora nicotianae] >gi|970656091|gb|KUF94150.1| hypothetical protein AM588_10005819 [Phytophthora nicotianae] >gi|970663051|gb|KUG00323.1| Histone H2A [Phytophthora nicotianae] >gi|1214712666|gb|OWZ23595.1| Histone H2A type 1 [Phytophthora megakarya]) HSP 1 Score: 212.231 bits (539), Expect = 1.429e-68 Identity = 112/141 (79.43%), Postives = 124/141 (87.94%), Query Frame = 0
Query: 1 MAGKGKSGRGG-GKKGGVS--RSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPK---SKGKKSGKGSASQDY 135
M+GKGK+ GG GKK G S RS+KAGLQFPVGR++R+L+KGRYA R GSGAPVY+AAVLEYL AEILELAGNAARD+KKTRIIPRH+Q+AVRNDEELNKLLG VTIASGGV+PNIHSVLLPK S GKK GK SASQDY
Sbjct: 1 MSGKGKAATGGRGKKTGKSSTRSAKAGLQFPVGRVARYLRKGRYAQRTGSGAPVYMAAVLEYLCAEILELAGNAARDHKKTRIIPRHIQMAVRNDEELNKLLGDVTIASGGVMPNIHSVLLPKKSASAGKK-GKSSASQDY 140
BLAST of EWM21571.1 vs. NCBI_GenBank
Match: gi|953485732|emb|CEG49910.1| (histone [Plasmopara halstedii]) HSP 1 Score: 211.46 bits (537), Expect = 2.883e-68 Identity = 109/140 (77.86%), Postives = 121/140 (86.43%), Query Frame = 0
Query: 1 MAGKGKSGRGG-GKKGGVS--RSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGK--KSGKGSASQDY 135
M+GKGK+ GG GKK G S RS+KAGLQFPVGR++R+L+KGRYA R GSGAPVY+AAVLEYL AEILELAGNAARD+KKTRIIPRH+Q+AVRNDEELNKLLG VTIASGGV+PNIHSVLLPK K GK SASQDY
Sbjct: 1 MSGKGKAATGGRGKKTGKSSTRSAKAGLQFPVGRVARYLRKGRYAQRTGSGAPVYMAAVLEYLCAEILELAGNAARDHKKTRIIPRHIQMAVRNDEELNKLLGDVTIASGGVMPNIHSVLLPKKSATAGKKGKSSASQDY 140
BLAST of EWM21571.1 vs. NCBI_GenBank
Match: gi|1173949729|gb|OQR97735.1| (histone H2A type 1 [Achlya hypogyna]) HSP 1 Score: 210.305 bits (534), Expect = 7.401e-68 Identity = 109/143 (76.22%), Postives = 120/143 (83.92%), Query Frame = 0
Query: 1 MAGKGKSGRGGGKKG-GVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKG-------KKSGKGSASQDY 135
M+GKGK+ G GKKG SRSSKAGLQFPVGR++RFLKKGR+A R+G GAPVYLAAVLEYL AEILELAGNAARDNKK+RIIPRH+QLAVRNDEELNKLLG VTIASGGVLPNIH++LLPK +K K SASQDY
Sbjct: 1 MSGKGKATGGRGKKGKASSRSSKAGLQFPVGRVARFLKKGRFAQRIGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHNILLPKKTAVTTTPVKEKKTKSSASQDY 143
BLAST of EWM21571.1 vs. NCBI_GenBank
Match: gi|673035694|ref|XP_008871808.1| (histone H2A.6 [Aphanomyces invadans] >gi|574472247|gb|ETV99252.1| histone H2A.6 [Aphanomyces invadans]) HSP 1 Score: 210.305 bits (534), Expect = 7.991e-68 Identity = 110/144 (76.39%), Postives = 121/144 (84.03%), Query Frame = 0
Query: 1 MAGKGKSGRGGGKKG-GVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPK--------SKGKKSGKGSASQDY 135
M+GKGK+ G GKKG SRSSKAGLQFPVGR++RFLKKGR+A R+G GAPVYLAAVLEYL AEILELAGNAARDNKK+RIIPRH+QLAVRNDEELNKLLG VTIASGGVLPNIH++LLPK +K K K SASQDY
Sbjct: 1 MSGKGKATGGRGKKGKASSRSSKAGLQFPVGRVARFLKKGRFAQRIGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHNILLPKKSAMPGAVTKDGKKSKSSASQDY 144
BLAST of EWM21571.1 vs. NCBI_GenBank
Match: gi|1173958613|gb|OQS04946.1| (histone H2A type 1 [Thraustotheca clavata]) HSP 1 Score: 209.149 bits (531), Expect = 2.392e-67 Identity = 111/144 (77.08%), Postives = 122/144 (84.72%), Query Frame = 0
Query: 1 MAGKGKSGRGGGKKG-GVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKS--------KGKKSGKGSASQDY 135
M+GKGK+ G GKKG SRSSKAGLQFPVGR++RFLKKGR+A R+G GAPVYLAAVLEYL AEILELAGNAARDNKK+RIIPRH+QLAVRNDEELNKLLG VTIASGGVLPNIH++LLPK K KK+ K SASQDY
Sbjct: 1 MSGKGKATGGRGKKGKASSRSSKAGLQFPVGRVARFLKKGRFAQRIGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHNILLPKKTVPTVTPIKDKKT-KSSASQDY 143
BLAST of EWM21571.1 vs. NCBI_GenBank
Match: gi|545359299|ref|XP_005645131.1| (histone-fold-containing protein [Coccomyxa subellipsoidea C-169] >gi|384247099|gb|EIE20587.1| histone-fold-containing protein [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 208.379 bits (529), Expect = 3.595e-67 Identity = 105/131 (80.15%), Postives = 118/131 (90.08%), Query Frame = 0
Query: 7 SGRGGGK--KGGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKKSGKGSASQDY 135
SGRG GK K VS+S+KAGLQFPVGRI+R+LKKG+YA+RVG+GAPVYLAAVLEYL AEILELAGNAARDNKKTRI+PRH+QLAVRNDEEL+KLL GVTIASGGVLPNIHSVLLP GKK+ GS SQ++
Sbjct: 2 SGRGKGKTAKKSVSKSTKAGLQFPVGRIARYLKKGKYASRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLAGVTIASGGVLPNIHSVLLPTKTGKKTS-GSVSQEF 131
BLAST of EWM21571.1 vs. NCBI_GenBank
Match: gi|1173949718|gb|OQR97724.1| (histone H2A type 1 [Achlya hypogyna]) HSP 1 Score: 208.379 bits (529), Expect = 4.371e-67 Identity = 108/143 (75.52%), Postives = 119/143 (83.22%), Query Frame = 0
Query: 1 MAGKGKSGRGGGKKG-GVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKG-------KKSGKGSASQDY 135
M+GKGK+ G G KG SRSSKAGLQFPVGR++RFLKKGR+A R+G GAPVYLAAVLEYL AEILELAGNAARDNKK+RIIPRH+QLAVRNDEELNKLLG VTIASGGVLPNIH++LLPK +K K SASQDY
Sbjct: 1 MSGKGKATGGRGAKGKASSRSSKAGLQFPVGRVARFLKKGRFAQRIGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHNILLPKKTAVTTTPVKEKKTKSSASQDY 143 The following BLAST results are available for this feature:
BLAST of EWM21571.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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