EWM21571.1, cds9078 (CDS) Nannochloropsis gaditana

Overview
NameEWM21571.1
Unique Namecds9078
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:351738..352083 +
Alignment locationKK037251.1:352224..352285 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21571.1
Producthistone-fold-containing protein
Orig transcript idgnl|cribi|Naga_100012g58.1903.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:351738..352083 +
KK037251.1supercontigKK037251.1:352224..352285 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: INTERPRO
TermDefinition
IPR007125Histone_core_D
IPR009072Histone-fold
IPR002119Histone_H2A
Homology
BLAST of EWM21571.1 vs. NCBI_GenBank
Match: gi|585101826|gb|EWM21571.1| (histone-fold-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 263.848 bits (673), Expect = 3.414e-89
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
Query:    1 MAGKGKSGRGGGKKGGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKKSGKGSASQDY 135
            MAGKGKSGRGGGKKGGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKKSGKGSASQDY
Sbjct:    1 MAGKGKSGRGGGKKGGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKKSGKGSASQDY 135          
BLAST of EWM21571.1 vs. NCBI_GenBank
Match: gi|585112216|gb|EWM29644.1| (histone-fold-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 216.853 bits (551), Expect = 1.006e-70
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0
Query:   17 VSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKKSG 127
            VSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPK+K KKS 
Sbjct:   16 VSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKSA 126          
BLAST of EWM21571.1 vs. NCBI_GenBank
Match: gi|695377830|ref|XP_009516110.1| (hypothetical protein PHYSODRAFT_322459 [Phytophthora sojae] >gi|348689021|gb|EGZ28835.1| hypothetical protein PHYSODRAFT_322459 [Phytophthora sojae])

HSP 1 Score: 212.231 bits (539), Expect = 1.253e-68
Identity = 112/141 (79.43%), Postives = 124/141 (87.94%), Query Frame = 0
Query:    1 MAGKGKSGRGG-GKKGGVS--RSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPK---SKGKKSGKGSASQDY 135
            M+GKGK+  GG GKK G S  RS+KAGLQFPVGR++R+L+KGRYA R GSGAPVY+AAVLEYL AEILELAGNAARD+KKTRIIPRH+Q+AVRNDEELNKLLG VTIASGGV+PNIHSVLLPK   S GKK GK SASQDY
Sbjct:    1 MSGKGKAATGGRGKKTGKSSTRSAKAGLQFPVGRVARYLRKGRYAQRTGSGAPVYMAAVLEYLCAEILELAGNAARDHKKTRIIPRHIQMAVRNDEELNKLLGDVTIASGGVMPNIHSVLLPKKSASAGKK-GKASASQDY 140          
BLAST of EWM21571.1 vs. NCBI_GenBank
Match: gi|301118386|ref|XP_002906921.1| (histone H2A type 1 [Phytophthora infestans T30-4] >gi|675173405|ref|XP_008895587.1| histone H2A.X [Phytophthora parasitica INRA-310] >gi|262108270|gb|EEY66322.1| histone H2A type 1 [Phytophthora infestans T30-4] >gi|568105123|gb|ETN19768.1| histone H2A.X [Phytophthora parasitica INRA-310] >gi|570319097|gb|ETO67045.1| histone H2A.X [Phytophthora parasitica P1976] >gi|970633721|gb|KUF79260.1| Histone H2A [Phytophthora nicotianae] >gi|970656091|gb|KUF94150.1| hypothetical protein AM588_10005819 [Phytophthora nicotianae] >gi|970663051|gb|KUG00323.1| Histone H2A [Phytophthora nicotianae] >gi|1214712666|gb|OWZ23595.1| Histone H2A type 1 [Phytophthora megakarya])

HSP 1 Score: 212.231 bits (539), Expect = 1.429e-68
Identity = 112/141 (79.43%), Postives = 124/141 (87.94%), Query Frame = 0
Query:    1 MAGKGKSGRGG-GKKGGVS--RSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPK---SKGKKSGKGSASQDY 135
            M+GKGK+  GG GKK G S  RS+KAGLQFPVGR++R+L+KGRYA R GSGAPVY+AAVLEYL AEILELAGNAARD+KKTRIIPRH+Q+AVRNDEELNKLLG VTIASGGV+PNIHSVLLPK   S GKK GK SASQDY
Sbjct:    1 MSGKGKAATGGRGKKTGKSSTRSAKAGLQFPVGRVARYLRKGRYAQRTGSGAPVYMAAVLEYLCAEILELAGNAARDHKKTRIIPRHIQMAVRNDEELNKLLGDVTIASGGVMPNIHSVLLPKKSASAGKK-GKSSASQDY 140          
BLAST of EWM21571.1 vs. NCBI_GenBank
Match: gi|953485732|emb|CEG49910.1| (histone [Plasmopara halstedii])

HSP 1 Score: 211.46 bits (537), Expect = 2.883e-68
Identity = 109/140 (77.86%), Postives = 121/140 (86.43%), Query Frame = 0
Query:    1 MAGKGKSGRGG-GKKGGVS--RSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGK--KSGKGSASQDY 135
            M+GKGK+  GG GKK G S  RS+KAGLQFPVGR++R+L+KGRYA R GSGAPVY+AAVLEYL AEILELAGNAARD+KKTRIIPRH+Q+AVRNDEELNKLLG VTIASGGV+PNIHSVLLPK      K GK SASQDY
Sbjct:    1 MSGKGKAATGGRGKKTGKSSTRSAKAGLQFPVGRVARYLRKGRYAQRTGSGAPVYMAAVLEYLCAEILELAGNAARDHKKTRIIPRHIQMAVRNDEELNKLLGDVTIASGGVMPNIHSVLLPKKSATAGKKGKSSASQDY 140          
BLAST of EWM21571.1 vs. NCBI_GenBank
Match: gi|1173949729|gb|OQR97735.1| (histone H2A type 1 [Achlya hypogyna])

HSP 1 Score: 210.305 bits (534), Expect = 7.401e-68
Identity = 109/143 (76.22%), Postives = 120/143 (83.92%), Query Frame = 0
Query:    1 MAGKGKSGRGGGKKG-GVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKG-------KKSGKGSASQDY 135
            M+GKGK+  G GKKG   SRSSKAGLQFPVGR++RFLKKGR+A R+G GAPVYLAAVLEYL AEILELAGNAARDNKK+RIIPRH+QLAVRNDEELNKLLG VTIASGGVLPNIH++LLPK          +K  K SASQDY
Sbjct:    1 MSGKGKATGGRGKKGKASSRSSKAGLQFPVGRVARFLKKGRFAQRIGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHNILLPKKTAVTTTPVKEKKTKSSASQDY 143          
BLAST of EWM21571.1 vs. NCBI_GenBank
Match: gi|673035694|ref|XP_008871808.1| (histone H2A.6 [Aphanomyces invadans] >gi|574472247|gb|ETV99252.1| histone H2A.6 [Aphanomyces invadans])

HSP 1 Score: 210.305 bits (534), Expect = 7.991e-68
Identity = 110/144 (76.39%), Postives = 121/144 (84.03%), Query Frame = 0
Query:    1 MAGKGKSGRGGGKKG-GVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPK--------SKGKKSGKGSASQDY 135
            M+GKGK+  G GKKG   SRSSKAGLQFPVGR++RFLKKGR+A R+G GAPVYLAAVLEYL AEILELAGNAARDNKK+RIIPRH+QLAVRNDEELNKLLG VTIASGGVLPNIH++LLPK        +K  K  K SASQDY
Sbjct:    1 MSGKGKATGGRGKKGKASSRSSKAGLQFPVGRVARFLKKGRFAQRIGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHNILLPKKSAMPGAVTKDGKKSKSSASQDY 144          
BLAST of EWM21571.1 vs. NCBI_GenBank
Match: gi|1173958613|gb|OQS04946.1| (histone H2A type 1 [Thraustotheca clavata])

HSP 1 Score: 209.149 bits (531), Expect = 2.392e-67
Identity = 111/144 (77.08%), Postives = 122/144 (84.72%), Query Frame = 0
Query:    1 MAGKGKSGRGGGKKG-GVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKS--------KGKKSGKGSASQDY 135
            M+GKGK+  G GKKG   SRSSKAGLQFPVGR++RFLKKGR+A R+G GAPVYLAAVLEYL AEILELAGNAARDNKK+RIIPRH+QLAVRNDEELNKLLG VTIASGGVLPNIH++LLPK         K KK+ K SASQDY
Sbjct:    1 MSGKGKATGGRGKKGKASSRSSKAGLQFPVGRVARFLKKGRFAQRIGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHNILLPKKTVPTVTPIKDKKT-KSSASQDY 143          
BLAST of EWM21571.1 vs. NCBI_GenBank
Match: gi|545359299|ref|XP_005645131.1| (histone-fold-containing protein [Coccomyxa subellipsoidea C-169] >gi|384247099|gb|EIE20587.1| histone-fold-containing protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 208.379 bits (529), Expect = 3.595e-67
Identity = 105/131 (80.15%), Postives = 118/131 (90.08%), Query Frame = 0
Query:    7 SGRGGGK--KGGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKKSGKGSASQDY 135
            SGRG GK  K  VS+S+KAGLQFPVGRI+R+LKKG+YA+RVG+GAPVYLAAVLEYL AEILELAGNAARDNKKTRI+PRH+QLAVRNDEEL+KLL GVTIASGGVLPNIHSVLLP   GKK+  GS SQ++
Sbjct:    2 SGRGKGKTAKKSVSKSTKAGLQFPVGRIARYLKKGKYASRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLAGVTIASGGVLPNIHSVLLPTKTGKKTS-GSVSQEF 131          
BLAST of EWM21571.1 vs. NCBI_GenBank
Match: gi|1173949718|gb|OQR97724.1| (histone H2A type 1 [Achlya hypogyna])

HSP 1 Score: 208.379 bits (529), Expect = 4.371e-67
Identity = 108/143 (75.52%), Postives = 119/143 (83.22%), Query Frame = 0
Query:    1 MAGKGKSGRGGGKKG-GVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKG-------KKSGKGSASQDY 135
            M+GKGK+  G G KG   SRSSKAGLQFPVGR++RFLKKGR+A R+G GAPVYLAAVLEYL AEILELAGNAARDNKK+RIIPRH+QLAVRNDEELNKLLG VTIASGGVLPNIH++LLPK          +K  K SASQDY
Sbjct:    1 MSGKGKATGGRGAKGKASSRSSKAGLQFPVGRVARFLKKGRFAQRIGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHNILLPKKTAVTTTPVKEKKTKSSASQDY 143          
The following BLAST results are available for this feature:
BLAST of EWM21571.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101826|gb|EWM21571.1|3.414e-89100.00histone-fold-containing protein [Nannochloropsis g... [more]
gi|585112216|gb|EWM29644.1|1.006e-7097.30histone-fold-containing protein [Nannochloropsis g... [more]
gi|695377830|ref|XP_009516110.1|1.253e-6879.43hypothetical protein PHYSODRAFT_322459 [Phytophtho... [more]
gi|301118386|ref|XP_002906921.1|1.429e-6879.43histone H2A type 1 [Phytophthora infestans T30-4] ... [more]
gi|953485732|emb|CEG49910.1|2.883e-6877.86histone [Plasmopara halstedii][more]
gi|1173949729|gb|OQR97735.1|7.401e-6876.22histone H2A type 1 [Achlya hypogyna][more]
gi|673035694|ref|XP_008871808.1|7.991e-6876.39histone H2A.6 [Aphanomyces invadans] >gi|574472247... [more]
gi|1173958613|gb|OQS04946.1|2.392e-6777.08histone H2A type 1 [Thraustotheca clavata][more]
gi|545359299|ref|XP_005645131.1|3.595e-6780.15histone-fold-containing protein [Coccomyxa subelli... [more]
gi|1173949718|gb|OQR97724.1|4.371e-6775.52histone H2A type 1 [Achlya hypogyna][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9108rna9108Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications