rna9105, rna9105 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9105
Unique Name	rna9105
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3301
Alignment location	KK037251.1:348146..349897 -

Link to JBrowse

Properties


Property Name	Value
Product	charged multivesicular body protein
Orig transcript id	gnl\|cribi\|Naga_100012g56.1960.mrna
Orig protein id	gnl\|cribi\|Naga_100012g56.1960
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:348146..349897 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g56	gene8829	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9105	rna9105-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21628.1	cds9075	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:348146..349897-
coding sequence from alignment at KK037251.1:348146..349897-

mRNA sequence

>rna9105 ID=rna9105|Name=rna9105|organism=Nannochloropsis gaditana|type=mRNA|length=3301bp
CTACGCTATCACAAGCCTGGCGCGATTCACATGTGCATTGCGTACTATTG
TCCTGTTTCCCACTTGATCTTTGTCCGCCGTCGCAGCGCTGGGATAGTGG
TGTGTCTTGGGTGTCGCAATCCATGAGCTAGCTGTCATTACTTCGATGAC
GTTGGGATGGGGAAATGCTTTCTTCTGTGTGACTTGACACTCCTTCCGCT
CCGTATACCGCACAAAACGCTAATCACACCATTTCACACACAGAAAGTGT
TGTTGGGCTGGGATTTTCCGCCTTAGGATCGTTCTTGACGAGCCGTCACT
GCGTCGAGAGAGGAAGAAGGAGCGCCAGGGCGAGTAGGATGTCCTTGTCA
CAAAGCGATGAAGAGGAGGAGGAGGAGCACTGCCCACTGTGCTGCGAGAC
ATTGGACATCACGGATCGAAATTTTTTCCCGTGTCCTTGTGAATATCAGA
TATGCTGCTACTGCTGGAACCACATAAAAGAGAATTTGAACAAATTATGC
CCAGCCTGTCGAACTCCTTACGGTGACGACCCTCACATTTTTTCTCCCGT
TGATAAGGATGAGATAATCAAAAAACGGAAAGAGAAAAAAGCGCGAGAAC
GAGCCGAACGCCGGGAGCGAGAGCGAGAGAGAGAAAAACTTGAACGGAGG
GAGAGGGAGCGCGATCGGGATATCGGCCGTCCCGACCGAGACAGACGGGA
CACGGGCGTTGGGGCGATCGCCGGCTCGAGCACCAGCACGACCACGCACT
CGACCTCCTATCTGCTCTCCCCCAGCAACGGTCTGTCCCACCCGCTGCAT
CACCCGCTCTCCATGGCCCTTCCGCCCCCCCAAGCCCCCCCCCCCCCTCC
GTCCTCCTCCACACACGTGGTAGACCGGAGCACCTTGCGCAACATCCGCG
TGGTCCAACGCAATCTCGCCTACGTGCTGGGCCTGCCCGCCTCACTGGCC
TCGGAGGAGACCCTCCGGCGACCCGAGTACTTCGGCCAGTACGGGAAGAT
CGTCAAGGTGGCGGTCACACGTCCCGCGGTGCCCCCTGCGGCCTCGGGGG
TCCCTGGCTGCAGCGCCTACGTCACGTTCGCGCATAAGGAGGACGCACGT
GCCTGCATCCAGGCGCTCGACAACTTCGTCCTGCCCGTGAGCGAGGGGGG
CAACGGCGCGGGCCGGCCGATCCGAGCCTCTTTCGGGACGACCAAGTACT
GCAACACCTTCCTCCGCCACGTGCCCTGCAACAACCCCGAGTGCCTCTTC
TTGCACGAGGTGGAGGACGACAGCGAAGGGTGGACGCGGGAGGACGCGAT
CGCATGGCAGACCCGCATGCCGGGCAGTACGCCGGGGGCCCAGGTCATGG
TCGGGCAGGGCGGGCCCAGTGGGACGGGGAGGAGGGTGGCGGCGCCGATC
TTCCCACCCCCGCGGTGGGAGGAGCCGTCGGGGGGAGGCGGGGGGCAGGC
CTATGCGATGCCGTCCACCACTGTGACGGCGGCGGGGAACACCAGACAGA
GGCCTGGGGCCGCCCGGCCTCCCGCCAACCCGTGGAACCAGCAACAGCAG
CAACACCCACACCAGCACCAACAGCAAGAGCTAGAAAGGCAGCAGCCCGT
GCATTCGCATGGAAGTTTATCTTCGCAGGCACCGCCGGCAAAAGCAGGTC
TCCTGGCCACCTCTACCGCTCCGTCTCGCGGTCCCACCGCCCACCCCCCC
ACCCAGCCCGCAAGAGCCAACTCCATCAGCAGTCACAAGCAGCAGCAGCA
GCAGAGCCTTCCGCCTTACTTGGTGTCGCCGTCGCCAGAAATGGCGCCTG
GTCGAGAAGCTGCCACCAATGGGCCGGGTTTAGGGAACGCGGCCGTTACT
GGTCTCCCGCAACCGCCGCCCGGGATTATTTCACCCCCTCAAACTCCGAA
TCCGGGGGGGCCCTCTCTAGGTGTCCTCCCTTTCGACCTTGCAGCGGGTG
GGTCAGGCGGATTGCTTTGGTCGATGGAGGGGATTGTGCAACATAACGGT
GACGTCGGCATCAGCACGGACTCCGCGTCCGAGTTAGGGCAAGAAGGAGC
GGAAGGCGCCAGTCCGCCATCGTTAACTCTTTTTGGGGGCGAAGATCGGC
TCGGTGGGATCGAAGGGATGCCTCTTCCAGGGGTAAGGGAGGAAGGAGGA
GAGGCGAGGAAGCAGGTGCGTCCCCCCGGGCCGCCGGGTCCGAAGGTCTC
AGAGAAGACGATTCAACCGCCACTCAGAGGAGGCCTTTTATCCATGTTGT
GGGCGGGGGGGGGCAGTAGCAGCAGCGGCAACAGTCAAGGTGTGCTTGGC
AGCGGGAGGCCCTTTTCAAAAGCGCCCGGCTTATCCTCCTCCTCGGGTGA
GAGTTTGGCGGAGGAAAGCGGGAGCAACGGAGGCCATGGCGCCCTGCAGC
ATCCCGGAACCCACCTGCTCTTCTCGGCGTTTCCCTTCGCGGGCACCGGA
GTCGGAGAGGGGCAAAAGAGGAGTGGCCTCCTCGGTCACGCGGGAGCGGG
GTCTCTGGACCGGACTGAGACAGGTACCATCGGAGGGGCTCGGACAGGGA
GGGGCAATAAGGATGCTCGCCGAGAGGCCTTCACCGCCACCGAATGCCTC
GTCAGCCTTCTCGGCCTAGACCTGCCCGACGCTCCTTCCTCCTTGTCCGC
CCGGACCCGCGCGTGCCCCCCCCCGCAACAGCCGCCCGTCCCCTCCTCCA
CCCAGGCTCCAAGCTCCCGCTATTCATTCGCCACAGAAGAAGGCGGTGCC
GGGGGCGACAAAGCGGCAGAGGGGGTGACAGGCATGACCCGCGGCTACGT
CGGTGCGGGAAGTGGCGAAGCCAGCGGGAGCCTCTACCCCTCGTTGCGTT
CGGGCGTGGCTTTACTGCAGCAGCTCCTGCCAAATTGCTCCATCACGTAT
GGTGACGGGGCAGGCACTCCTGCGCACACAGCCGGTGCGCTTTCTTCCTC
TTCCGGTACCCCTTCTGGTAACAGTGGGCATGTCACTAACAGTGGCGCGG
ACAAGGACGGTCGGGGACAGGGCCTGCGGCCTGTCTTCTAGTACGCACGC
GCCAAATTGCTCACAGGTGGGACAGGAGAAGGGGAAGAAGGAGGGTGCTG
CAGCGGTGGGGAATCCGTGGACGGGGGAGCGCCCGCACAAGGAATGCGCC
GATGGATGATGAAGAAAGAACCAGGAAGGAGGAGGCACAAGGCTCATGAG
AAGGATGATCCGACCCATTTGTCAATCAGATAAAAAAAATAAAGACAATG
AGGAAAAACACGCGAGTCAGAGGCTCTGGGATGCCCTCTCCTTGACCTAA
C

protein sequence of rna9105

>rna9105-protein ID=rna9105-protein|Name=rna9105|organism=Nannochloropsis gaditana|type=polypeptide|length=226bp
MGNMWAKKPLKEIMRENKRMINRAIRELDRERNNLEKNEKKLIMDIKKYA
KENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMAS
AMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELTGEMLGDAMDDAM
TEEGDEEEQERIVGAVLTELGLDMTDAVPEAPGAVPNTATATAAATSSGG
QREPQALGADPTMTDLEARLNNLRRE

mRNA from alignment at KK037251.1:348146..349897-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9105 ID=rna9105|Name=rna9105|organism=Nannochloropsis gaditana|type=mRNA|length=1752bp|location=Sequence derived from alignment at KK037251.1:348146..349897- (Nannochloropsis gaditana)
ACAATCTATTCGTTAGGGGCATTCCGAGTCTGATTATGGAGTTGTAGGTC
AAGACTGTGGCAGGCGTGAAAGAGAGATACCACAGTGCAAAAAGTGTCAA
TTTGAACAATTGTGTAGTAGGCGTGACAGAAGATCAGCGAACCCGCCGAG
CGGCGCTCTCCGCCTGAGCCCTTGCTTATGCCCCCGCGCCGCAAAAACCT
TACCGTAGGAATACGAACGCACCGAATTTTTCTCATTTGTTCAAAAACTA
CTTAAGAGAATGGTAACTCTTGTCTGCTTCGAGACGGAAGTACTGATAAT
TTGCCGTGACGCGAGGCAAAGGTAAAGGGCAGTGCGGTGTAGCTTCATTA
TGCTACACGGAACAAATGTAACACCCTTCATTTAAATCATGGGTAAGGTA
CTACTTGCCTCTTTCAGGACGTGATGGACAATGACATATATTATCATGAA
GTGTGCGGTGTTGTTCGGCCAAACTTATCACGCCCCTACATGGAATGGGG
GGCTCCAGTGTACGCTGATCCCCGTCACGTGGAACATGGTGTCTTTAAGT
ACCGTGGGCTCGTTGAAGGGACGCAATACTTTGATGCGGCTCATAAACGA
GCTCTTAAAAAGCAGTTTTGTGGTCTCTTTCTCCGCGAACTTGCCGCAGG
TCGAAATGCGCTCAGGGACGCCGCTTCGGATAAATCGTGTGGCCGACTCC
CGCGTTGCCCCTGTGAACGAATCTCACGCCCGCTCTCGCCCACGTGCCCC
GCACAGCAAATTTGGCTACGCTAAAGATGGGGAACATGTGGGCCAAAAAG
CCTTTGAAGGAAATTATGCGCGAGAATAAACGCATGATTAACCGCGCCAT
CCGGGAGCTGGACCGGGAGCGCAACAACTTGGAAAAGAACGAGAAGAAGC
TCATAATGGATATAAAGAAATATGCCAAGGAGAACCAGATGGGGGCGGTC
AAGACCATGGCAAAGGACTTAGTTCGTACACGGTGCGTGGGGTAGGGGCC
CCGGTAAAAGCGCATGCGTGCCTGGACTCTCGTTCAACTCAGAAGGAGTC
TTATGGGTGGTTTTCCCACAAGTAAAAAAAGGACACCAGAAATTTTTACA
ATCTGTCCCTGTGTTCCCTATTTCCACATATTTCTGCTATCACGCTTCCG
ATAGAAATTATCAGACCAAGTTCATTGAAATGCGCTCGCATTTGCAGGGG
GCTGCCCTGAAGCTGGAAACCGTGCGGTCCCACGAGGCCATGGCCAGTGC
CATGCGCAGCGTTACATCGGCCATGGTAAGCATGAACAAACAGGTCAATG
TCCCGGCGCTCACGAAGATCATGACGGACTTCGCCCGCGAGAACGAGAAG
TCGGAGCTGACGGGGGAGATGCTGGGTGACGCCATGGACGACGCGATGAC
GGAGGAAGGGGACGAGGAGGAGCAGGAGCGGATCGTGGGCGCCGTGCTCA
CGGAGCTGGGTTTGGACATGACGGACGCCGTGCCCGAGGCCCCAGGGGCG
GTGCCCAATACGGCCACTGCCACGGCCGCGGCCACCAGCAGTGGGGGACA
GAGAGAGCCACAGGCGTTGGGGGCAGACCCGACCATGACGGATCTGGAGG
CACGTTTGAACAATTTGAGAAGGGAGTGAGTCGGGAGTTGAAGTCGAGGA
CGCAGGGGGGAGGGGCGGGGCTCACAGAGAGTTACTGTGGGTGATTTATA
ATGTGAAAGAAAGCAATCGAGAAAACCAAGAAGTATCCACCTTATAGGGC
GT

Coding sequence (CDS) from alignment at KK037251.1:348146..349897-

>rna9105 ID=rna9105|Name=rna9105|organism=Nannochloropsis gaditana|type=CDS|length=1362bp|location=Sequence derived from alignment at KK037251.1:348146..349897- (Nannochloropsis gaditana)
AAATTATCAGACCAAGTTCATTGAAATGCGCTCGCATTTGCAGGGGGCTG
CCCTGAAGCTGGAAACCGTGCGGTCCCACGAGGCCATGGCCAGTGCCATG
CGCAGCGTTACATCGGCCATGGTAAGCATGAACAAACAGGTCAATGTCCC
GGCGCTCACGAAGATCATGACGGACTTCGCCCGCGAGAACGAGAAGTCGG
AGCTGACGGGGGAGATGCTGGGTGACGCCATGGACGACGCGATGACGGAG
GAAGGGGACGAGGAGGAGCAGGAGCGGATCGTGGGCGCCGTGCTCACGGA
GCTGGGTTTGGACATGACGGACGCCGTGCCCGAGGCCCCAGGGGCGGTGC
CCAATACGGCCACTGCCACGGCCGCGGCCACCAGCAGTGGGGGACAGAGA
GAGCCACAGGCGTTGGGGGCAGACCCGACCATGACGGATCTGGAGGCACG
TTTGAACAATTTGAGAAGGGAGTGAATGGGGAACATGTGGGCCAAAAAGC
CTTTGAAGGAAATTATGCGCGAGAATAAACGCATGATTAACCGCGCCATC
CGGGAGCTGGACCGGGAGCGCAACAACTTGGAAAAGAACGAGAAGAAGCT
CATAATGGATATAAAGAAATATGCCAAGGAGAACCAGATGGGGGCGGTCA
AGACCATGGCAAAGGACTTAGTTCGTACACGAAATTATCAGACCAAGTTC
ATTGAAATGCGCTCGCATTTGCAGGGGGCTGCCCTGAAGCTGGAAACCGT
GCGGTCCCACGAGGCCATGGCCAGTGCCATGCGCAGCGTTACATCGGCCA
TGGTAAGCATGAACAAACAGGTCAATGTCCCGGCGCTCACGAAGATCATG
ACGGACTTCGCCCGCGAGAACGAGAAGTCGGAGCTGACGGGGGAGATGCT
GGGTGACGCCATGGACGACGCGATGACGGAGGAAGGGGACGAGGAGGAGC
AGGAGCGGATCGTGGGCGCCGTGCTCACGGAGCTGGGTTTGGACATGACG
GACGCCGTGCCCGAGGCCCCAGGGGCGGTGCCCAATACGGCCACTGCCAC
GGCCGCGGCCACCAGCAGTGGGGGACAGAGAGAGCCACAGGCGTTGGGGG
CAGACCCGACCATGACGGATCTGGAGGCACGTTTGAACAATTTGAGAAGG
GAGTGAATGGGGAACATGTGGGCCAAAAAGCCTTTGAAGGAAATTATGCG
CGAGAATAAACGCATGATTAACCGCGCCATCCGGGAGCTGGACCGGGAGC
GCAACAACTTGGAAAAGAACGAGAAGAAGCTCATAATGGATATAAAGAAA
TATGCCAAGGAGAACCAGATGGGGGCGGTCAAGACCATGGCAAAGGACTT
AGTTCGTACACG

Synonyms

Publications