rna9099, rna9099 (mRNA) Nannochloropsis gaditana

Overview
Namerna9099
Unique Namerna9099
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length537
Alignment locationKK037251.1:327328..328552 -

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Properties
Property NameValue
Productlight-harvesting protein
Orig transcript idgnl|cribi|Naga_100012g50.1904.mrna
Orig protein idgnl|cribi|Naga_100012g50.1904
GeneVCP1
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:327328..328552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
VCP1gene8823Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9099rna9099-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21572.1cds9069Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9099 ID=rna9099|Name=rna9099|organism=Nannochloropsis gaditana|type=mRNA|length=537bp
ATGACCCTAGTCTTTCGGAGCACTCGGTACCCCACCAGCCCCGGAGAGAG
GGAAGGAGGGAGGTGGACCCGCGGGGAGACCCCGTGCTTCTGGTCGTGCC
CGGGCAGGGCGTGTGTGTGTAGGTTTGATTCTGTTTTTTTTTGTCGACGT
GACCGCCTCGGGGTCCTCTCACTCGTCTCCCTTTTGGGAAGGCCGCGTCG
CTCTCAGTCCGTTCGCTGTCCATCCCACGGCACCACCTATTCAGTTCATA
TTGGAGACTTCCTGCGCAGTGTCTCAGAAGCAAGATGCTTCCTTTTCGTT
TACAGCGAGCCTGTGGGCAGGCGACTCCCATGTCGGGGTTCGGAGGAGCA
TTCACTCATTATCACACCGTCATCCGTGCTGGATGGACAGGGCGCGAGGA
CGACTCGACAGGAGGAGATAGGCTTGAGAGAGAGAGAAGTGACCTTGATT
GTCGGAGAGGGATCAAGACGTGTATGTCCTTGGTCAGGACCCGGTGCCTG
TTTTAAGTTCAAGGAAGAGTTTGAAGGCGAATCTTGA
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protein sequence of rna9099

>rna9099-protein ID=rna9099-protein|Name=rna9099|organism=Nannochloropsis gaditana|type=polypeptide|length=210bp
MKTAALLTVSSLMGASAFVAPAPKFSRTRGVARMSFEGEAGVTAPLGYWD
PLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAG
DGIPASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQKEDKIPGDVQ
PDTSAFAKLEDKTEEEALAYQNKEINNGRLAMVAWTGATVGALLTNGEDP
ITTLLAKLGN
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mRNA from alignment at KK037251.1:327328..328552-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9099 ID=rna9099|Name=rna9099|organism=Nannochloropsis gaditana|type=mRNA|length=1225bp|location=Sequence derived from alignment at KK037251.1:327328..328552- (Nannochloropsis gaditana)
ATGGTAAGTTCCCAGAGCTTTGGAATTGATGGTTGTTGTGGCTAGATGTC
TTATTCTACGGGAGAGAGAACACTGTTGAAGAGTGCTGTGACTTGTTTGG
GGCGATTTAGCATCTTTTCATGGACTCATGTGTCGATATTTTTAACGACA
TGCTTACGGGACATGCTTGGGTCGCACCGAATGACATGAATAATAAGGAA
TCGGGAGTGCTTTGTTCTAATAAGTCGACCCTTTTTCCCTTGATGACCTT
GATTGTTTCAGCTGTAACCCACGTCTCACCCCCGTCTCACCCCCGTCTCC
CATGCGTTTTTTCGAACAAAATGGAATGGCGTGTGTATGTTATAGAGTGA
TAAGTCTTTCTGGCTGGACTTGCCTCCTCACTGGTCTGTCTCTTCCCCCA
CACCTCAACTCCGAGCAGAAGACCGCCGCTCTGCTCACCGTCTCCTCCCT
CATGGGAGCCTCTGCCTTTGTGGCCCCCGCCCCCAAGTTCAGCCGCACCC
GCGGTGTTGCCCGCATGTCCTTCGAGGGCGAGGCCGGCGTGACCGCCCCC
CTTGGCTACTGGGTACGTGAATCATCACTCTTCACTCGATCTTTGGCCTC
CCCGCGTCTTACCATGATGTCACATTCTCTAACACTTCGTCCTTGAATAG
GACCCCCTTGGCTTCTCCGCCGATGGTGATGTCGAGAAGTTCAACCGTTA
CCGCGCCATCGAGATCAAGCACGGCCGAGGTAGGCGATTCGAGAGAGATC
TTATCCCATCGGCCCTGGAGGTACTCACTCGCTCCTTTCCCCCTTTTGTT
CCGCCTCATCTCCCGCAGTGGCCATGCTTGCCATGCTCCACACCCTGGTG
ACCGGCCTCGGCGTGAAGCTCCCCGGCCTTGTGGCTGCCGGTGACGGCAT
CCCCGCCTCCATGCCCGCGGGCATCAACGCCATCACCTCCGGCGCTTGGG
CCGCACAGGGATGGGCGCAGGTGCTCCTCTTCTGCTCCGCCCTCGAGGTC
CTCGCCCCCCAGAAGGAGGACAAGATCCCCGGGGATGTGCAGCCCGACAC
CTCTGCCTTCGCCAAGCTCGAGGACAAGACCGAGGAGGAGGCGCTCGCCT
ACCAGAACAAGGAGATCAACAACGGCCGCCTGGCCATGGTTGCCTGGACC
GGAGCCACTGTGGGCGCCCTCCTCACCAACGGCGAGGACCCCATCACCAC
CCTCCTGGCCAAGCTCGGCAACTAA
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Coding sequence (CDS) from alignment at KK037251.1:327328..328552-

>rna9099 ID=rna9099|Name=rna9099|organism=Nannochloropsis gaditana|type=CDS|length=2532bp|location=Sequence derived from alignment at KK037251.1:327328..328552- (Nannochloropsis gaditana)
TGGCCATGCTTGCCATGCTCCACACCCTGGTGACCGGCCTCGGCGTGAAG
CTCCCCGGCCTTGTGGCTGCCGGTGACGGCATCCCCGCCTCCATGCCCGC
GGGCATCAACGCCATCACCTCCGGCGCTTGGGCCGCACAGGGATGGGCGC
AGGTGCTCCTCTTCTGCTCCGCCCTCGAGGTCCTCGCCCCCCAGAAGGAG
GACAAGATCCCCGGGGATGTGCAGCCCGACACCTCTGCCTTCGCCAAGCT
CGAGGACAAGACCGAGGAGGAGGCGCTCGCCTACCAGAACAAGGAGATCA
ACAACGGCCGCCTGGCCATGGTTGCCTGGACCGGAGCCACTGTGGGCGCC
CTCCTCACCAACGGCGAGGACCCCATCACCACCCTCCTGGCCAAGCTCGG
CAACTAAGACCCCCTTGGCTTCTCCGCCGATGGTGATGTCGAGAAGTTCA
ACCGTTACCGCGCCATCGAGATCAAGCACGGCCGAGAAGACCGCCGCTCT
GCTCACCGTCTCCTCCCTCATGGGAGCCTCTGCCTTTGTGGCCCCCGCCC
CCAAGTTCAGCCGCACCCGCGGTGTTGCCCGCATGTCCTTCGAGGGCGAG
GCCGGCGTGACCGCCCCCCTTGGCTACTGGATGTGGCCATGCTTGCCATG
CTCCACACCCTGGTGACCGGCCTCGGCGTGAAGCTCCCCGGCCTTGTGGC
TGCCGGTGACGGCATCCCCGCCTCCATGCCCGCGGGCATCAACGCCATCA
CCTCCGGCGCTTGGGCCGCACAGGGATGGGCGCAGGTGCTCCTCTTCTGC
TCCGCCCTCGAGGTCCTCGCCCCCCAGAAGGAGGACAAGATCCCCGGGGA
TGTGCAGCCCGACACCTCTGCCTTCGCCAAGCTCGAGGACAAGACCGAGG
AGGAGGCGCTCGCCTACCAGAACAAGGAGATCAACAACGGCCGCCTGGCC
ATGGTTGCCTGGACCGGAGCCACTGTGGGCGCCCTCCTCACCAACGGCGA
GGACCCCATCACCACCCTCCTGGCCAAGCTCGGCAACTAAGACCCCCTTG
GCTTCTCCGCCGATGGTGATGTCGAGAAGTTCAACCGTTACCGCGCCATC
GAGATCAAGCACGGCCGAGAAGACCGCCGCTCTGCTCACCGTCTCCTCCC
TCATGGGAGCCTCTGCCTTTGTGGCCCCCGCCCCCAAGTTCAGCCGCACC
CGCGGTGTTGCCCGCATGTCCTTCGAGGGCGAGGCCGGCGTGACCGCCCC
CCTTGGCTACTGGATGTGGCCATGCTTGCCATGCTCCACACCCTGGTGAC
CGGCCTCGGCGTGAAGCTCCCCGGCCTTGTGGCTGCCGGTGACGGCATCC
CCGCCTCCATGCCCGCGGGCATCAACGCCATCACCTCCGGCGCTTGGGCC
GCACAGGGATGGGCGCAGGTGCTCCTCTTCTGCTCCGCCCTCGAGGTCCT
CGCCCCCCAGAAGGAGGACAAGATCCCCGGGGATGTGCAGCCCGACACCT
CTGCCTTCGCCAAGCTCGAGGACAAGACCGAGGAGGAGGCGCTCGCCTAC
CAGAACAAGGAGATCAACAACGGCCGCCTGGCCATGGTTGCCTGGACCGG
AGCCACTGTGGGCGCCCTCCTCACCAACGGCGAGGACCCCATCACCACCC
TCCTGGCCAAGCTCGGCAACTAAGACCCCCTTGGCTTCTCCGCCGATGGT
GATGTCGAGAAGTTCAACCGTTACCGCGCCATCGAGATCAAGCACGGCCG
AGAAGACCGCCGCTCTGCTCACCGTCTCCTCCCTCATGGGAGCCTCTGCC
TTTGTGGCCCCCGCCCCCAAGTTCAGCCGCACCCGCGGTGTTGCCCGCAT
GTCCTTCGAGGGCGAGGCCGGCGTGACCGCCCCCCTTGGCTACTGGATGT
GGCCATGCTTGCCATGCTCCACACCCTGGTGACCGGCCTCGGCGTGAAGC
TCCCCGGCCTTGTGGCTGCCGGTGACGGCATCCCCGCCTCCATGCCCGCG
GGCATCAACGCCATCACCTCCGGCGCTTGGGCCGCACAGGGATGGGCGCA
GGTGCTCCTCTTCTGCTCCGCCCTCGAGGTCCTCGCCCCCCAGAAGGAGG
ACAAGATCCCCGGGGATGTGCAGCCCGACACCTCTGCCTTCGCCAAGCTC
GAGGACAAGACCGAGGAGGAGGCGCTCGCCTACCAGAACAAGGAGATCAA
CAACGGCCGCCTGGCCATGGTTGCCTGGACCGGAGCCACTGTGGGCGCCC
TCCTCACCAACGGCGAGGACCCCATCACCACCCTCCTGGCCAAGCTCGGC
AACTAAGACCCCCTTGGCTTCTCCGCCGATGGTGATGTCGAGAAGTTCAA
CCGTTACCGCGCCATCGAGATCAAGCACGGCCGAGAAGACCGCCGCTCTG
CTCACCGTCTCCTCCCTCATGGGAGCCTCTGCCTTTGTGGCCCCCGCCCC
CAAGTTCAGCCGCACCCGCGGTGTTGCCCGCATGTCCTTCGAGGGCGAGG
CCGGCGTGACCGCCCCCCTTGGCTACTGGATG
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Synonyms
Publications