EWM21572.1, cds9069 (CDS) Nannochloropsis gaditana

Overview
NameEWM21572.1
Unique Namecds9069
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:328550..328552 -
Alignment locationKK037251.1:327991..328134 -
Alignment locationKK037251.1:327824..327902 -
Alignment locationKK037251.1:327328..327734 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21572.1
Productlight-harvesting protein
Orig transcript idgnl|cribi|Naga_100012g50.1904.mrna
GeneVCP1
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:328550..328552 -
KK037251.1supercontigKK037251.1:327991..328134 -
KK037251.1supercontigKK037251.1:327824..327902 -
KK037251.1supercontigKK037251.1:327328..327734 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0009579thylakoid
GO:0009507chloroplast
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO:0006464cellular protein modification process
GO:0006091generation of precursor metabolites and energy
GO:0009765photosynthesis, light harvesting
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR023329Chlorophyll_a/b-bd_dom
IPR022796Chloroa_b-bind
Homology
BLAST of EWM21572.1 vs. NCBI_GenBank
Match: gi|585101827|gb|EWM21572.1| (light-harvesting protein [Nannochloropsis gaditana])

HSP 1 Score: 424.861 bits (1091), Expect = 2.097e-150
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0
Query:    1 MKTAALLTVSSLMGASAFVAPAPKFSRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQKEDKIPGDVQPDTSAFAKLEDKTEEEALAYQNKEINNGRLAMVAWTGATVGALLTNGEDPITTLLAKLGN 210
            MKTAALLTVSSLMGASAFVAPAPKFSRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQKEDKIPGDVQPDTSAFAKLEDKTEEEALAYQNKEINNGRLAMVAWTGATVGALLTNGEDPITTLLAKLGN
Sbjct:    1 MKTAALLTVSSLMGASAFVAPAPKFSRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQKEDKIPGDVQPDTSAFAKLEDKTEEEALAYQNKEINNGRLAMVAWTGATVGALLTNGEDPITTLLAKLGN 210          
BLAST of EWM21572.1 vs. NCBI_GenBank
Match: gi|357542310|gb|AET85054.1| (VCP1 [Nannochloropsis sp. W2J3B])

HSP 1 Score: 387.882 bits (995), Expect = 8.770e-136
Identity = 189/209 (90.43%), Postives = 196/209 (93.78%), Query Frame = 0
Query:    1 MKTAALLTVSSLMGASAFVAPAPKFSRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQKEDKIPGDVQPDTSAFAKLEDKTEEEALAYQNKEINNGRLAMVAWTGATVGALLTNGEDPITTLLAKLG 209
            MKTAALLTVS+LMGA AF+APAPKFSRTRGVARMSFE EAGVTAPLGYWDPLG SADGDV+KFNRYRAIEIKHGRVAMLAMLHTL+TG GV LPGLV AGDGIP SMP GI AITSGAWAAQGWAQVL+FCSALEVLAPQKEDKIPGDVQPDTSAFAKL+DKTEEEAL YQN EINNGRLAMVAWTGATVGALLTNGE P+TTLL KLG
Sbjct:    1 MKTAALLTVSTLMGAQAFMAPAPKFSRTRGVARMSFENEAGVTAPLGYWDPLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLVTAGDGIPQSMPYGIGAITSGAWAAQGWAQVLIFCSALEVLAPQKEDKIPGDVQPDTSAFAKLDDKTEEEALKYQNTEINNGRLAMVAWTGATVGALLTNGEHPVTTLLNKLG 209          
BLAST of EWM21572.1 vs. NCBI_GenBank
Match: gi|2734864|gb|AAB94637.1| (violaxanthin/chlorophyll a binding protein precursor [Nannochloropsis sp.])

HSP 1 Score: 369.392 bits (947), Expect = 1.638e-128
Identity = 184/209 (88.04%), Postives = 192/209 (91.87%), Query Frame = 0
Query:    1 MKTAALLTVSSLMGASAFVAPAPKFSRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQKEDKIPGDVQPDTSAFAKLEDKTEEEALAYQNKEINNGRLAMVAWTGATVGALLTNGEDPITTLLAKLG 209
            MKTAALLTVS+LMGA AF+APAPKFSRTRGVARMSFE EAGVTAPLGYWDPLG SADGDV+KFNRYRAIEIKHGRVAMLAMLHTL+TG GV LPGLV AGDGIP SMP  + A  SGAW AQGWAQVL+FCSALEVLAPQKEDKIPGDVQPDTSAFAKL+DKTEEEAL YQN EINNGRLAMVAWTGATVGALLTNGE P+TTLL KLG
Sbjct:    1 MKTAALLTVSTLMGAQAFMAPAPKFSRTRGVARMSFENEAGVTAPLGYWDPLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLVTAGDGIPQSMPTAL-APYSGAW-AQGWAQVLIFCSALEVLAPQKEDKIPGDVQPDTSAFAKLDDKTEEEALKYQNTEINNGRLAMVAWTGATVGALLTNGEHPVTTLLNKLG 207          
BLAST of EWM21572.1 vs. NCBI_GenBank
Match: gi|553175638|ref|XP_005852336.1| (protein fucoxanthin chlorophyll a c protein [Nannochloropsis gaditana CCMP526] >gi|422296192|gb|EKU23491.1| protein fucoxanthin chlorophyll a c protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 132.88 bits (333), Expect = 5.809e-37
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0
Query:   13 MGASAFVAPAPKFSRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGR 75
            MGASAFVAPAPKFSRTRGVARMSFE EAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGR
Sbjct:    1 MGASAFVAPAPKFSRTRGVARMSFEDEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGR 63          
BLAST of EWM21572.1 vs. NCBI_GenBank
Match: gi|1483334|emb|CAA68028.1| (fucoxanthin chlorophyll a /c binding protein [Heterosigma akashiwo])

HSP 1 Score: 123.635 bits (309), Expect = 1.011e-31
Identity = 80/195 (41.03%), Postives = 113/195 (57.95%), Query Frame = 0
Query:   13 MGASAFVAPAPK-FSRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVA-AGDGIPASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQKEDKIPGDVQPDTSAFAKLEDKTEEEALAYQNKEINNGRLAMVAWTGATVGALLTNGEDPITTLL 205
            MGASAFVAP     +++    +MSFE E GV APLG+WDPLG   + D E+F+R R +EIKHGR++MLA+L  LVT  GV+LPG    AGD   +S+P G+ A++  A  A G AQ + F   +E+   Q ++++  D +    A A  +D+ ++   A    E+NNGR A +      V   L N    I +LL
Sbjct:   13 MGASAFVAPNKMGVAKSSSALKMSFENEIGVQAPLGFWDPLGLLDEADQERFDRLRTVEIKHGRISMLAILGHLVTTAGVRLPGAYDLAGDQF-SSLPTGLKALS--ALPAAGVAQTIGFIGLIELGFAQIKEELEADCEARMDA-AGWDDEKKDSKRAI---ELNNGRAAQMGILALMVHEQLDNNPYIINSLL 200          
BLAST of EWM21572.1 vs. NCBI_GenBank
Match: gi|10119935|gb|AAG13004.1|AF226859_1 (light harvesting protein lhcf3, partial [Saccharina latissima])

HSP 1 Score: 120.939 bits (302), Expect = 7.541e-31
Identity = 75/186 (40.32%), Postives = 106/186 (56.99%), Query Frame = 0
Query:   26 SRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVA-AGDGIPASMPAGINAITSGAWAAQGWAQVLLFCSALEVLA-PQKEDKIPGDVQPDTSAFAKLEDKTEEEA-LAYQNKEINNGRLAMVAWTGATVGALLTNGEDPITTLLAKL 208
            ++T    +MSFE E GV APLGYWDPL +  + D E+F+R R +EIKHGR+ MLA+L  +V    V+LPG+++ + D   A MP G+ A++       G AQ+++F   LEV    QKE   PGD+    + F K  D  +EE  L  +  E+NNGR A +   G  V  ++ N    I  LL +L
Sbjct:   11 AKTSSAMKMSFENELGVQAPLGYWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHIVQE-NVRLPGMLSFSNDQSFADMPNGLGALSK--MGPIGVAQIVIFIGFLEVFVMKQKEGSFPGDMS-RVNPFEKQWDSFDEETKLRKRAIELNNGRAAQMGIFGLIVHEVINNQPYVINNLLGEL 192          
BLAST of EWM21572.1 vs. NCBI_GenBank
Match: gi|94442145|dbj|BAE93609.1| (fucoxanthin chlorophyll a/c binding protein [Pleurochrysis carterae])

HSP 1 Score: 117.857 bits (294), Expect = 1.473e-29
Identity = 82/204 (40.20%), Postives = 112/204 (54.90%), Query Frame = 0
Query:    7 LTVSSLMGASAFVAPAPKFSRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIP-ASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQKE----DKIPGDVQPDTSAFAKLEDKTEEEALAYQNKEINNGRLAMVAWTGATVGALLTNGEDPITTLL 205
            + +S  + A  F AP P    +R   RM+FEGE     P G +DPLG  ADGD EKF+R R +E+KHGR+ MLA+L  +VT  GV+LPG ++   G+P AS+P GI A++     A G AQ+  F   LE LA  K+     + PGD +     F   ++ TEEE  + +  E+NNGR A +      V  +L N    I  LL
Sbjct:    1 MALSLSVAALGFNAPLPAAIASRSAVRMAFEGEIN-PGPQGVYDPLGLVADGDQEKFDRLRYVELKHGRICMLAILGHVVTSAGVRLPGELSF--GLPFASVPTGIKALS--VVPAAGLAQIFAFVGFLE-LAVMKDVEGTGEFPGDFRNGFIDFG-WDNFTEEEKASKRGIELNNGRAAQMGILALMVHEMLDNNPYIINDLL 197          
BLAST of EWM21572.1 vs. NCBI_GenBank
Match: gi|873232735|emb|CEM04545.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 116.316 bits (290), Expect = 1.031e-28
Identity = 75/179 (41.90%), Postives = 101/179 (56.42%), Query Frame = 0
Query:   35 SFEGEAGVTAPLGYWDPLGFSADGDVEK--FNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIP-ASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQK----EDKIPGDVQP----DTSAFAKLEDKTEEEALAYQNKEINNGRLAMVAWTGATVGALLTNGEDPIT 202
            +F+ E GV  PLGY+DPL    D D E   + ++RAIEIKHGR+AMLA+L  +V     + PGL+++   +    +P GI+AI SG   A G AQ+L F + LE +   +    ED  PGD+QP      S  AKL +        YQ+KEINNGRLA +   G  VG LL++   P  
Sbjct:   53 AFDSEPGVLPPLGYFDPLNIFTDKDPEDAAYKKWRAIEIKHGRLAMLAVLGYIVP-FYYQFPGLLSSSLNLKFTDVPPGIDAIISGKMPAAGIAQILAFQAFLEAVVFSRQFTDEDAEPGDIQPGWWFRESDPAKLRE--------YQDKEINNGRLAQMGILGLVVGDLLSDKPFPFV 222          
BLAST of EWM21572.1 vs. NCBI_GenBank
Match: gi|1072227197|gb|OEU11937.1| (chlorophyll a/b-binding protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 110.153 bits (274), Expect = 1.075e-26
Identity = 73/187 (39.04%), Postives = 101/187 (54.01%), Query Frame = 0
Query:    1 MKTAALLTVSSLMGASAFVAPAPKFSRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQKEDKIPGDVQPDTSAFAKLEDKTEEEALAYQNKEINNGRLAMVAWTG 187
            MK + LL   SL+G++A  APA    +T  ++    E   GVTAP+GY+DPLG S + D    + YR  E+KHGRVAM A L   +   GV  P   ++    P      + A+        GW Q +L C A+E +A + +D+ PG    D    A   D ++E  + YQNKE+NNGRLAMVA+ G
Sbjct:    1 MKLSILL---SLVGSAAAFAPAQTSQKTTSLSAWKDETVVGVTAPMGYFDPLGLSRNKDDATMSMYREAELKHGRVAMAATLGWYLNAAGVH-PAFQSSLSNNPLEAAKQLPAV--------GWVQFVLGCGAIEWMAEKIKDR-PGYKAGDVLGAAYWVDDSDEGWVDYQNKEVNNGRLAMVAFMG 174          
BLAST of EWM21572.1 vs. NCBI_GenBank
Match: gi|2498374|sp|Q41093.1|FCPE_PHATR (RecName: Full=Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic; Flags: Precursor >gi|313115|emb|CAA80676.1| FcpE [Phaeodactylum tricornutum])

HSP 1 Score: 109.383 bits (272), Expect = 2.300e-26
Identity = 70/181 (38.67%), Postives = 102/181 (56.35%), Query Frame = 0
Query:    6 LLTVSSLMGASAFVAPAPKFSRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQKE---DKIPGDVQPDTSAFAKLEDKTEEEALAYQNKEINNGRLAMV 183
             +  +SL+ ++A  APA + +RT     M+FE E G   PLG++DPLG  ADGD EKF+R R +EIKHGR++MLA+   LV   G++LPG +        S+P G  A+T+ + A  G AQ++ F   LE LA  K+    +  GD + D   F   +   EE  +  +  E+N GR A +
Sbjct:    3 FVVFASLLASAARFAPAQQSARTSVATNMAFENELGAQPPLGFFDPLGLVADGDQEKFDRLRYVEIKHGRISMLAVAGYLVQENGIRLPGDIDYSGTSFESIPNGFAALTTISGA--GIAQIVAFIGFLE-LAVMKDITGGEFVGDFRNDFIDFG-WDSFDEETKMQKRAIELNQGRAAQM 179          
The following BLAST results are available for this feature:
BLAST of EWM21572.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101827|gb|EWM21572.1|2.097e-150100.00light-harvesting protein [Nannochloropsis gaditana... [more]
gi|357542310|gb|AET85054.1|8.770e-13690.43VCP1 [Nannochloropsis sp. W2J3B][more]
gi|2734864|gb|AAB94637.1|1.638e-12888.04violaxanthin/chlorophyll a binding protein precurs... [more]
gi|553175638|ref|XP_005852336.1|5.809e-3798.41protein fucoxanthin chlorophyll a c protein [Nanno... [more]
gi|1483334|emb|CAA68028.1|1.011e-3141.03fucoxanthin chlorophyll a /c binding protein [Hete... [more]
gi|10119935|gb|AAG13004.1|AF226859_17.541e-3140.32light harvesting protein lhcf3, partial [Saccharin... [more]
gi|94442145|dbj|BAE93609.1|1.473e-2940.20fucoxanthin chlorophyll a/c binding protein [Pleur... [more]
gi|873232735|emb|CEM04545.1|1.031e-2841.90unnamed protein product [Vitrella brassicaformis C... [more]
gi|1072227197|gb|OEU11937.1|1.075e-2639.04chlorophyll a/b-binding protein [Fragilariopsis cy... [more]
gi|2498374|sp|Q41093.1|FCPE_PHATR2.300e-2638.67RecName: Full=Fucoxanthin-chlorophyll a-c binding ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9099rna9099Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications