EWM21572.1, cds9069 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21572.1 vs. NCBI_GenBank
Match: gi|585101827|gb|EWM21572.1| (light-harvesting protein [Nannochloropsis gaditana]) HSP 1 Score: 424.861 bits (1091), Expect = 2.097e-150 Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0 Query: 1 MKTAALLTVSSLMGASAFVAPAPKFSRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQKEDKIPGDVQPDTSAFAKLEDKTEEEALAYQNKEINNGRLAMVAWTGATVGALLTNGEDPITTLLAKLGN 210 MKTAALLTVSSLMGASAFVAPAPKFSRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQKEDKIPGDVQPDTSAFAKLEDKTEEEALAYQNKEINNGRLAMVAWTGATVGALLTNGEDPITTLLAKLGN Sbjct: 1 MKTAALLTVSSLMGASAFVAPAPKFSRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQKEDKIPGDVQPDTSAFAKLEDKTEEEALAYQNKEINNGRLAMVAWTGATVGALLTNGEDPITTLLAKLGN 210
BLAST of EWM21572.1 vs. NCBI_GenBank
Match: gi|357542310|gb|AET85054.1| (VCP1 [Nannochloropsis sp. W2J3B]) HSP 1 Score: 387.882 bits (995), Expect = 8.770e-136 Identity = 189/209 (90.43%), Postives = 196/209 (93.78%), Query Frame = 0 Query: 1 MKTAALLTVSSLMGASAFVAPAPKFSRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQKEDKIPGDVQPDTSAFAKLEDKTEEEALAYQNKEINNGRLAMVAWTGATVGALLTNGEDPITTLLAKLG 209 MKTAALLTVS+LMGA AF+APAPKFSRTRGVARMSFE EAGVTAPLGYWDPLG SADGDV+KFNRYRAIEIKHGRVAMLAMLHTL+TG GV LPGLV AGDGIP SMP GI AITSGAWAAQGWAQVL+FCSALEVLAPQKEDKIPGDVQPDTSAFAKL+DKTEEEAL YQN EINNGRLAMVAWTGATVGALLTNGE P+TTLL KLG Sbjct: 1 MKTAALLTVSTLMGAQAFMAPAPKFSRTRGVARMSFENEAGVTAPLGYWDPLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLVTAGDGIPQSMPYGIGAITSGAWAAQGWAQVLIFCSALEVLAPQKEDKIPGDVQPDTSAFAKLDDKTEEEALKYQNTEINNGRLAMVAWTGATVGALLTNGEHPVTTLLNKLG 209
BLAST of EWM21572.1 vs. NCBI_GenBank
Match: gi|2734864|gb|AAB94637.1| (violaxanthin/chlorophyll a binding protein precursor [Nannochloropsis sp.]) HSP 1 Score: 369.392 bits (947), Expect = 1.638e-128 Identity = 184/209 (88.04%), Postives = 192/209 (91.87%), Query Frame = 0 Query: 1 MKTAALLTVSSLMGASAFVAPAPKFSRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQKEDKIPGDVQPDTSAFAKLEDKTEEEALAYQNKEINNGRLAMVAWTGATVGALLTNGEDPITTLLAKLG 209 MKTAALLTVS+LMGA AF+APAPKFSRTRGVARMSFE EAGVTAPLGYWDPLG SADGDV+KFNRYRAIEIKHGRVAMLAMLHTL+TG GV LPGLV AGDGIP SMP + A SGAW AQGWAQVL+FCSALEVLAPQKEDKIPGDVQPDTSAFAKL+DKTEEEAL YQN EINNGRLAMVAWTGATVGALLTNGE P+TTLL KLG Sbjct: 1 MKTAALLTVSTLMGAQAFMAPAPKFSRTRGVARMSFENEAGVTAPLGYWDPLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLVTAGDGIPQSMPTAL-APYSGAW-AQGWAQVLIFCSALEVLAPQKEDKIPGDVQPDTSAFAKLDDKTEEEALKYQNTEINNGRLAMVAWTGATVGALLTNGEHPVTTLLNKLG 207
BLAST of EWM21572.1 vs. NCBI_GenBank
Match: gi|553175638|ref|XP_005852336.1| (protein fucoxanthin chlorophyll a c protein [Nannochloropsis gaditana CCMP526] >gi|422296192|gb|EKU23491.1| protein fucoxanthin chlorophyll a c protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 132.88 bits (333), Expect = 5.809e-37 Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0 Query: 13 MGASAFVAPAPKFSRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGR 75 MGASAFVAPAPKFSRTRGVARMSFE EAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGR Sbjct: 1 MGASAFVAPAPKFSRTRGVARMSFEDEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGR 63
BLAST of EWM21572.1 vs. NCBI_GenBank
Match: gi|1483334|emb|CAA68028.1| (fucoxanthin chlorophyll a /c binding protein [Heterosigma akashiwo]) HSP 1 Score: 123.635 bits (309), Expect = 1.011e-31 Identity = 80/195 (41.03%), Postives = 113/195 (57.95%), Query Frame = 0 Query: 13 MGASAFVAPAPK-FSRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVA-AGDGIPASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQKEDKIPGDVQPDTSAFAKLEDKTEEEALAYQNKEINNGRLAMVAWTGATVGALLTNGEDPITTLL 205 MGASAFVAP +++ +MSFE E GV APLG+WDPLG + D E+F+R R +EIKHGR++MLA+L LVT GV+LPG AGD +S+P G+ A++ A A G AQ + F +E+ Q ++++ D + A A +D+ ++ A E+NNGR A + V L N I +LL Sbjct: 13 MGASAFVAPNKMGVAKSSSALKMSFENEIGVQAPLGFWDPLGLLDEADQERFDRLRTVEIKHGRISMLAILGHLVTTAGVRLPGAYDLAGDQF-SSLPTGLKALS--ALPAAGVAQTIGFIGLIELGFAQIKEELEADCEARMDA-AGWDDEKKDSKRAI---ELNNGRAAQMGILALMVHEQLDNNPYIINSLL 200
BLAST of EWM21572.1 vs. NCBI_GenBank
Match: gi|10119935|gb|AAG13004.1|AF226859_1 (light harvesting protein lhcf3, partial [Saccharina latissima]) HSP 1 Score: 120.939 bits (302), Expect = 7.541e-31 Identity = 75/186 (40.32%), Postives = 106/186 (56.99%), Query Frame = 0 Query: 26 SRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVA-AGDGIPASMPAGINAITSGAWAAQGWAQVLLFCSALEVLA-PQKEDKIPGDVQPDTSAFAKLEDKTEEEA-LAYQNKEINNGRLAMVAWTGATVGALLTNGEDPITTLLAKL 208 ++T +MSFE E GV APLGYWDPL + + D E+F+R R +EIKHGR+ MLA+L +V V+LPG+++ + D A MP G+ A++ G AQ+++F LEV QKE PGD+ + F K D +EE L + E+NNGR A + G V ++ N I LL +L Sbjct: 11 AKTSSAMKMSFENELGVQAPLGYWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHIVQE-NVRLPGMLSFSNDQSFADMPNGLGALSK--MGPIGVAQIVIFIGFLEVFVMKQKEGSFPGDMS-RVNPFEKQWDSFDEETKLRKRAIELNNGRAAQMGIFGLIVHEVINNQPYVINNLLGEL 192
BLAST of EWM21572.1 vs. NCBI_GenBank
Match: gi|94442145|dbj|BAE93609.1| (fucoxanthin chlorophyll a/c binding protein [Pleurochrysis carterae]) HSP 1 Score: 117.857 bits (294), Expect = 1.473e-29 Identity = 82/204 (40.20%), Postives = 112/204 (54.90%), Query Frame = 0 Query: 7 LTVSSLMGASAFVAPAPKFSRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIP-ASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQKE----DKIPGDVQPDTSAFAKLEDKTEEEALAYQNKEINNGRLAMVAWTGATVGALLTNGEDPITTLL 205 + +S + A F AP P +R RM+FEGE P G +DPLG ADGD EKF+R R +E+KHGR+ MLA+L +VT GV+LPG ++ G+P AS+P GI A++ A G AQ+ F LE LA K+ + PGD + F ++ TEEE + + E+NNGR A + V +L N I LL Sbjct: 1 MALSLSVAALGFNAPLPAAIASRSAVRMAFEGEIN-PGPQGVYDPLGLVADGDQEKFDRLRYVELKHGRICMLAILGHVVTSAGVRLPGELSF--GLPFASVPTGIKALS--VVPAAGLAQIFAFVGFLE-LAVMKDVEGTGEFPGDFRNGFIDFG-WDNFTEEEKASKRGIELNNGRAAQMGILALMVHEMLDNNPYIINDLL 197
BLAST of EWM21572.1 vs. NCBI_GenBank
Match: gi|873232735|emb|CEM04545.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 116.316 bits (290), Expect = 1.031e-28 Identity = 75/179 (41.90%), Postives = 101/179 (56.42%), Query Frame = 0 Query: 35 SFEGEAGVTAPLGYWDPLGFSADGDVEK--FNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIP-ASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQK----EDKIPGDVQP----DTSAFAKLEDKTEEEALAYQNKEINNGRLAMVAWTGATVGALLTNGEDPIT 202 +F+ E GV PLGY+DPL D D E + ++RAIEIKHGR+AMLA+L +V + PGL+++ + +P GI+AI SG A G AQ+L F + LE + + ED PGD+QP S AKL + YQ+KEINNGRLA + G VG LL++ P Sbjct: 53 AFDSEPGVLPPLGYFDPLNIFTDKDPEDAAYKKWRAIEIKHGRLAMLAVLGYIVP-FYYQFPGLLSSSLNLKFTDVPPGIDAIISGKMPAAGIAQILAFQAFLEAVVFSRQFTDEDAEPGDIQPGWWFRESDPAKLRE--------YQDKEINNGRLAQMGILGLVVGDLLSDKPFPFV 222
BLAST of EWM21572.1 vs. NCBI_GenBank
Match: gi|1072227197|gb|OEU11937.1| (chlorophyll a/b-binding protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 110.153 bits (274), Expect = 1.075e-26 Identity = 73/187 (39.04%), Postives = 101/187 (54.01%), Query Frame = 0 Query: 1 MKTAALLTVSSLMGASAFVAPAPKFSRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQKEDKIPGDVQPDTSAFAKLEDKTEEEALAYQNKEINNGRLAMVAWTG 187 MK + LL SL+G++A APA +T ++ E GVTAP+GY+DPLG S + D + YR E+KHGRVAM A L + GV P ++ P + A+ GW Q +L C A+E +A + +D+ PG D A D ++E + YQNKE+NNGRLAMVA+ G Sbjct: 1 MKLSILL---SLVGSAAAFAPAQTSQKTTSLSAWKDETVVGVTAPMGYFDPLGLSRNKDDATMSMYREAELKHGRVAMAATLGWYLNAAGVH-PAFQSSLSNNPLEAAKQLPAV--------GWVQFVLGCGAIEWMAEKIKDR-PGYKAGDVLGAAYWVDDSDEGWVDYQNKEVNNGRLAMVAFMG 174
BLAST of EWM21572.1 vs. NCBI_GenBank
Match: gi|2498374|sp|Q41093.1|FCPE_PHATR (RecName: Full=Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic; Flags: Precursor >gi|313115|emb|CAA80676.1| FcpE [Phaeodactylum tricornutum]) HSP 1 Score: 109.383 bits (272), Expect = 2.300e-26 Identity = 70/181 (38.67%), Postives = 102/181 (56.35%), Query Frame = 0 Query: 6 LLTVSSLMGASAFVAPAPKFSRTRGVARMSFEGEAGVTAPLGYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPASMPAGINAITSGAWAAQGWAQVLLFCSALEVLAPQKE---DKIPGDVQPDTSAFAKLEDKTEEEALAYQNKEINNGRLAMV 183 + +SL+ ++A APA + +RT M+FE E G PLG++DPLG ADGD EKF+R R +EIKHGR++MLA+ LV G++LPG + S+P G A+T+ + A G AQ++ F LE LA K+ + GD + D F + EE + + E+N GR A + Sbjct: 3 FVVFASLLASAARFAPAQQSARTSVATNMAFENELGAQPPLGFFDPLGLVADGDQEKFDRLRYVEIKHGRISMLAVAGYLVQENGIRLPGDIDYSGTSFESIPNGFAALTTISGA--GIAQIVAFIGFLE-LAVMKDITGGEFVGDFRNDFIDFG-WDSFDEETKMQKRAIELNQGRAAQM 179 The following BLAST results are available for this feature:
BLAST of EWM21572.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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