rna9097, rna9097 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9097
Unique Name	rna9097
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2551
Alignment location	KK037251.1:324308..326089 +

Link to JBrowse

Properties


Property Name	Value
Product	splicing factor u2af large subunit
Orig transcript id	gnl\|cribi\|Naga_100012g48.1978.mrna
Orig protein id	gnl\|cribi\|Naga_100012g48.1978
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:324308..326089 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g48	gene8821	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9097	rna9097-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21646.1	cds9067	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:324308..326089+
coding sequence from alignment at KK037251.1:324308..326089+

mRNA sequence

>rna9097 ID=rna9097|Name=rna9097|organism=Nannochloropsis gaditana|type=mRNA|length=2551bp
AAGCTACGTGCATAAAGCGAATTGGCAGGCACATGATTTCTAGCGCACAG
TTGCCCTCAGAAATCTGAAAGCAAATGCTCTGCAGCGCTCTGTTCCGACG
TGACTTCCCTCACGTGTCTTCAACCACCAAAAGATCGAATGCGTCTGTCG
CAAGAATGAATCCCGAAACTCTGCGGACCACATGCTCATATGATCCAAAA
TCCTCATGTTGTTGTTTTGACCGTGGACAGGTAGTCGTAAAGTCGTATCC
GCGGGCCTGCTTCGCCCCTCAAAACCCGAGGCCTCGGACTCGGGTAACGA
GAAGGAGAAGGGCGCAGCTCAGGCCGCCAAAATGCCATGTTTACGCAGCG
TGGTGGGGCGACATGCTCGCGCCTGCTTCGTTGTCTTTTCTTTGGCGGCG
ATGCACTCCTTCGCGCGTCAGGGACTCCTGCAACCAGAAGACACAACTTT
GCCTGCCCCTGACTCGTCCACGGACGCGCCCCCTGGGGCCAAGTATTCCT
TGCTGTCCTTCCCGCGCGCCGCTCAGTGGGCCGACCCGCAGCAAAAGTGC
ACCATCGTCGAGCTTCACAATCGGAAAGGCTGCCTGTTCGAAGAAAAAGC
CAGCTTACCAGCAGACATGGACGTGGTCATCCCCACGCCAAGTAGCAGCG
GCAGCAAGACCAACACCAGCGGCAGCCCCTTCGATGTCCCCGCCTCCCGC
TCCGGGGAACAGGCCCCTTGGCTCGGCCAGCGCGCCCCCTTCGGCCCCCC
ACAGTCCCGGACATGGAGAGGCCGGCGCCTGACCGTGAGCGAGGCCGTGG
AGCTGCAGCCATTGCTCGACGCCCGGCCGCTGGGCTACAACGGCGCCGAC
GTGGCAGCCTCCCTGCCCGCCCCTCCCATGGCGGGGGACAAGGGCCAGCC
CCACACCCTCTGGTTGCTGGGAGACACCTTCTTGGGAAGGATGGAGGGGC
GGCGGCGGATCCCCGGCTATTTTGTGCACAACAGCGTGGCCACCATGCCG
GTGTGGAACCATCCGAGCCGCGAAGCCGACCCGGCGCAGGTTGTGTTCTG
GCACGGACTCTCCCCTCCCGCCCCTTTTGCGGCCACGGCGGAGGAAGAGA
AGGACGGGTGCCCGGCTTCCCTGTTCCGCACGCCGGGGGAGAGGGTCCGA
GGGGACGAGAACGAGTGCCACGAGGGCGGAGAGTACCTGTGGCCCGTCTC
CGGCCTGGCCGTGGACCTTGCCGCTGCCCCGAGCAACGCCTCCGCCTCCC
GCTCCTTCGCCTCCCATTTGCTGCTCCTGGCCACCCGGTGGGCGTACCTG
CCCTGGATCGAGGAGGACGTGAACATGACTCGCTCGGTGCTCAACTTCCA
AGTGCTGGGCACCACCCTGGTCGTCGTGGATGACGCCCACCTCGAACCCC
CTCGTTGGCGGTACCGGACTCGGGACTGGCCGGGAACGGGGCCGGACGTA
AACTGGTTCCAGGCGATAGCCTTGGCCGGGGAGGAGGAGGGCGGGCGGGA
GGGAGGGAAGCAGGGGGGGTTGGCCCGGAGCGAGAACGAGCTGGTGTTCC
TGATGGGGACTGCTCCGGAGGACAGCGCGGTAGCCGAGAAGGGCGGAGGG
AAAGGATCGACCCGGCAGATTCTGGGACGGGTGCCGGTGAAAGGGCTTTT
GGACATGACGCTGGAGGGAATGGAGGTATGGGGGCGGGGGAAAGCTGCGC
CGGCGAAGGCCCGGGCGGCGGCCCAAGTCGGGGCCACGGGCGCCAAAGCT
GGAGATAAAGCCGGCCTAGGGCGAGTTTTTCTACCACCGGCGGCCTCGGG
GGCCATCCCGTCCGCTTTGACCGGCAACGATGGCTCCAGATCTGACGCCT
CCGAGGGGTGGGGCACCCTCTCCAGTTACATGGACGGATCCTGGGTGGCC
ACAAGCCTTCTCTCCCCTGTCTATACGGGCGTCTCATTGCAGTACTCCTC
CTTTCTGAGGCGGTGGTACAGCGTGGCCATCGACTGGCTGGGCAAGCAGG
CCTTACTGCAGACGGCGGAGAGCATCACGGGGCCGTGGGACTCCACTCCC
ATCTACGACCTGCCGCCGCCCTTCAACGACAGCAACCTCATGGCCTACAC
GGGCAAAGCCCACCCTGAACTTGCAGACAATGAAAATGAGATTGTCTTCA
CCTACGTGGCTAATACGCCAGGAGTGGTCTACCCATTGTTCGAGGACGGG
GCCGATATTTTGTACGTTCCGCGATTTGTACGTATAGTGTTTGATGGAAA
AGAAGGGGGAAAAGAGAATATAAGGGCCCATAGAAAGAAGTAAAGCAGGT
GAACCTTCACTTGGGATCAAAATGGATGTGTAAAAATGCATTTAAATCGG
AAAGTAGGTGATTCAAATGATTGCAGAAATGGAAGAAAATTGAGAACAAC
GTCACCGTTGTTCCACGTCCGCAGATCTCTGCTTTACGCCCACAAAAGGG
CCGTGCCACCTAACAAAATACACTGAAGTGTCGATTGCACGTCCATCACC
GCCTCTTTGCGTCTGCTGCGGGCCTTCGTGACTGTAGAGTGTACGTTTTG
G

protein sequence of rna9097

>rna9097-protein ID=rna9097-protein|Name=rna9097|organism=Nannochloropsis gaditana|type=polypeptide|length=593bp
MPGSEDDASGPGAAALPGEEESQPPAVRTEGEGASEALSSNGTGHKGGDV
HEEEGRGKEEMGGPNGKERHGDRDEDEEEVASKEKRRERRRHSSRSRSRS
PRGGSRGSRRDKRRSRSRSESPRGDRRRRSRDREGKSSRRSRRSASGSRS
LSPPSSRRRRRRERANNWDKPPEGLTVGQGAVTATLQGLGGLGLSGSGAG
QFMDPPMLDPGVMMGTAALGAGGVVRGAIGTLTAPTAPPNQQELFNGVMV
PTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSATAPPIVGVQ
VNESKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIVD
PPTGVSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGNLKAF
NLVKDPALGTSKGFCFFEYLDHALTDRVCAELNGFELGERKLICQRANPS
PAPAAAPSMAALAGGSMHPYAALLTGSSAAAAPLGPATKVLKLSNMVVAE
ELRDDNEYEEIVMDIKEECGKYGQVVSLKVPRPSYKEDGSVDVSPPGVGE
VFVEFADEDGATKAGNALRNRQFSGRTVVCEFVKEEDYAGGNL

mRNA from alignment at KK037251.1:324308..326089+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9097 ID=rna9097|Name=rna9097|organism=Nannochloropsis gaditana|type=mRNA|length=1782bp|location=Sequence derived from alignment at KK037251.1:324308..326089+ (Nannochloropsis gaditana)
ATGCCAGGCTCAGAGGATGATGCTTCGGGCCCCGGTGCAGCGGCGCTGCC
AGGCGAAGAAGAATCACAGCCGCCCGCAgtgaggacggagggcgaagggg
ctTCTGAGGCTCTCTCTTCGAATGGGACCGGCCACAAAGGAGGCGATGTa
cacgaggaagaaggacgaggaaaggaagagatgggAGGCCCcaacgggaa
ggaaaggcatggggacagggatgaggatgaggaggaggtcgcgaGCAAGG
AAAAGCGGCGGGAACGCAGGCGACATTCGTCCCGATCGCGAAGTCGATCT
CCTCGCGGAGGCAGCCGTGGGTCACGGAGAGACAAAAGACGGAGCCGGAG
TCGTTCTGAAAGTCCGAGGGGGGACCGGCGGCGGCGCAGCCGAgataggg
aggggaaatcATCGCGGCGCTCTAGGCGCTCAGCCAGTGGCAGCCGCAGT
CtgtcccccccgtcctctcgcCGTCGCCGACGTCGAGAACGGGCCAACAA
CTGGGACAAGCCTCCTGAGGGGCTAACAGTGGGACAGGGGGCCGTGACTG
CGACGCTTCAAGGCTTGGGGGGGCTGGGACTGTCCGggtcgggggcgggg
cagttTATGGACCCGCCGATGCTGGATCCGGGCGTGATGATGGGGACGGC
GGCgttgggggcgggaggcgtgGTGCGGGGTGCGATCGGGACGCTGACGG
cgcccacggccccgccCAACCAGCAGGAGTTGTTTAACGGCGTGATGGTG
CCCACCATGATGCTTCGACAGGCCAAGCGCCTTTACGTGGGGAATGTGCC
GATGGGCTGCGACCAGTTCGTCTTGATGCAGCTCTTCAACCAGGCCATGG
TGGCAGCGGGCAAGGGGagcgccaccgccccccccatcgtGGGCGTGCAA
GTGAACGAGAGCAagcccttcgccttcttggaGACCCGCACCCCCGAGGA
CGCCGCcaacgtcctcctcttcgacggGATCACCATCGGGGCCAACCAGC
TGAAGGTCCGGCGGCCCAAGGACTTCAAGCCGCTGCCCGGCATCGTTGAC
CCCCCTACGGGcgtctccctcatcccgGGGCACCTGCCCACCAGCGTGGA
GAACACGGAGAACAAGATCTATCTGGGCTCCATTCCCACCCACTTCAACG
ACCTCCAGGTGCGGGAGCTTGTCTCTGCCTTCGGGAACCTCAAGGCCTTC
AACCTGGTCAAGGATCCGGCCCTGGGGACCAGCAAGGGCTTCTGTTTCTT
CGAGTACCTGGATCACGCCCTTACGGACCGGGTATGCGCGGAGCTGAACG
GCTTCGAACTCGGGGAGCGGAAGCTCATCTGCCAGCGCGCGAACCCCAGC
CCCGCTCCCGCTGCTGCCCCCTCgatggcggccttggcgggCGGGAGCAT
GCACCCCTACGCAGCCCTCTTGACCGGGTCatcggcggcggcggctccGC
TGGGCCCGGCCACCAAGGTCCTGAAATTGAGCAacatggtggtggcggag
gagttGCGGGACGACAACGAGTACGAGGAGATCGTGATGGATATCAAGGA
GGAGTGCGGAAAGTACGGGCAGGTGGTGTCCCTGAAGGTGCCGCGTCCCT
CCtacaaggaggacgggagcgtgGACGTGTCGCCCCCGGGGGTCGGGGAG
GTTTTTGTCGAGTTTGCGGATGAGGATGGGGCTACGAAGGCGGGGAATGC
CCTCAGGAATCGACAGTTCTCTGGGAGGACCGTGGTGTGTGAGttcgtca
aggaggaggattacGCGGGCGGGAACCtctga

Coding sequence (CDS) from alignment at KK037251.1:324308..326089+

>rna9097 ID=rna9097|Name=rna9097|organism=Nannochloropsis gaditana|type=CDS|length=1782bp|location=Sequence derived from alignment at KK037251.1:324308..326089+ (Nannochloropsis gaditana)
ATGCCAGGCTCAGAGGATGATGCTTCGGGCCCCGGTGCAGCGGCGCTGCC
AGGCGAAGAAGAATCACAGCCGCCCGCAgtgaggacggagggcgaagggg
ctTCTGAGGCTCTCTCTTCGAATGGGACCGGCCACAAAGGAGGCGATGTa
cacgaggaagaaggacgaggaaaggaagagatgggAGGCCCcaacgggaa
ggaaaggcatggggacagggatgaggatgaggaggaggtcgcgaGCAAGG
AAAAGCGGCGGGAACGCAGGCGACATTCGTCCCGATCGCGAAGTCGATCT
CCTCGCGGAGGCAGCCGTGGGTCACGGAGAGACAAAAGACGGAGCCGGAG
TCGTTCTGAAAGTCCGAGGGGGGACCGGCGGCGGCGCAGCCGAgataggg
aggggaaatcATCGCGGCGCTCTAGGCGCTCAGCCAGTGGCAGCCGCAGT
CtgtcccccccgtcctctcgcCGTCGCCGACGTCGAGAACGGGCCAACAA
CTGGGACAAGCCTCCTGAGGGGCTAACAGTGGGACAGGGGGCCGTGACTG
CGACGCTTCAAGGCTTGGGGGGGCTGGGACTGTCCGggtcgggggcgggg
cagttTATGGACCCGCCGATGCTGGATCCGGGCGTGATGATGGGGACGGC
GGCgttgggggcgggaggcgtgGTGCGGGGTGCGATCGGGACGCTGACGG
cgcccacggccccgccCAACCAGCAGGAGTTGTTTAACGGCGTGATGGTG
CCCACCATGATGCTTCGACAGGCCAAGCGCCTTTACGTGGGGAATGTGCC
GATGGGCTGCGACCAGTTCGTCTTGATGCAGCTCTTCAACCAGGCCATGG
TGGCAGCGGGCAAGGGGagcgccaccgccccccccatcgtGGGCGTGCAA
GTGAACGAGAGCAagcccttcgccttcttggaGACCCGCACCCCCGAGGA
CGCCGCcaacgtcctcctcttcgacggGATCACCATCGGGGCCAACCAGC
TGAAGGTCCGGCGGCCCAAGGACTTCAAGCCGCTGCCCGGCATCGTTGAC
CCCCCTACGGGcgtctccctcatcccgGGGCACCTGCCCACCAGCGTGGA
GAACACGGAGAACAAGATCTATCTGGGCTCCATTCCCACCCACTTCAACG
ACCTCCAGGTGCGGGAGCTTGTCTCTGCCTTCGGGAACCTCAAGGCCTTC
AACCTGGTCAAGGATCCGGCCCTGGGGACCAGCAAGGGCTTCTGTTTCTT
CGAGTACCTGGATCACGCCCTTACGGACCGGGTATGCGCGGAGCTGAACG
GCTTCGAACTCGGGGAGCGGAAGCTCATCTGCCAGCGCGCGAACCCCAGC
CCCGCTCCCGCTGCTGCCCCCTCgatggcggccttggcgggCGGGAGCAT
GCACCCCTACGCAGCCCTCTTGACCGGGTCatcggcggcggcggctccGC
TGGGCCCGGCCACCAAGGTCCTGAAATTGAGCAacatggtggtggcggag
gagttGCGGGACGACAACGAGTACGAGGAGATCGTGATGGATATCAAGGA
GGAGTGCGGAAAGTACGGGCAGGTGGTGTCCCTGAAGGTGCCGCGTCCCT
CCtacaaggaggacgggagcgtgGACGTGTCGCCCCCGGGGGTCGGGGAG
GTTTTTGTCGAGTTTGCGGATGAGGATGGGGCTACGAAGGCGGGGAATGC
CCTCAGGAATCGACAGTTCTCTGGGAGGACCGTGGTGTGTGAGttcgtca
aggaggaggattacGCGGGCGGGAACCtctga

Synonyms

Publications