EWM21646.1, cds9067 (CDS) Nannochloropsis gaditana

Overview
NameEWM21646.1
Unique Namecds9067
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:324308..326089 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21646.1
Productsplicing factor u2af large subunit
Orig transcript idgnl|cribi|Naga_100012g48.1978.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:324308..326089 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006397mRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR006529U2AF_lg
IPR000504RRM_dom
IPR003954RRM_dom_euk
Homology
BLAST of EWM21646.1 vs. NCBI_GenBank
Match: gi|585101901|gb|EWM21646.1| (splicing factor u2af large subunit [Nannochloropsis gaditana])

HSP 1 Score: 1197.96 bits (3098), Expect = 0.000e+0
Identity = 593/593 (100.00%), Postives = 593/593 (100.00%), Query Frame = 0
Query:    1 MPGSEDDASGPGAAALPGEEESQPPAVRTEGEGASEALSSNGTGHKGGDVHEEEGRGKEEMGGPNGKERHGDRDEDEEEVASKEKRRERRRHSSRSRSRSPRGGSRGSRRDKRRSRSRSESPRGDRRRRSRDREGKSSRRSRRSASGSRSLSPPSSRRRRRRERANNWDKPPEGLTVGQGAVTATLQGLGGLGLSGSGAGQFMDPPMLDPGVMMGTAALGAGGVVRGAIGTLTAPTAPPNQQELFNGVMVPTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSATAPPIVGVQVNESKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIVDPPTGVSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGNLKAFNLVKDPALGTSKGFCFFEYLDHALTDRVCAELNGFELGERKLICQRANPSPAPAAAPSMAALAGGSMHPYAALLTGSSAAAAPLGPATKVLKLSNMVVAEELRDDNEYEEIVMDIKEECGKYGQVVSLKVPRPSYKEDGSVDVSPPGVGEVFVEFADEDGATKAGNALRNRQFSGRTVVCEFVKEEDYAGGNL 593
            MPGSEDDASGPGAAALPGEEESQPPAVRTEGEGASEALSSNGTGHKGGDVHEEEGRGKEEMGGPNGKERHGDRDEDEEEVASKEKRRERRRHSSRSRSRSPRGGSRGSRRDKRRSRSRSESPRGDRRRRSRDREGKSSRRSRRSASGSRSLSPPSSRRRRRRERANNWDKPPEGLTVGQGAVTATLQGLGGLGLSGSGAGQFMDPPMLDPGVMMGTAALGAGGVVRGAIGTLTAPTAPPNQQELFNGVMVPTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSATAPPIVGVQVNESKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIVDPPTGVSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGNLKAFNLVKDPALGTSKGFCFFEYLDHALTDRVCAELNGFELGERKLICQRANPSPAPAAAPSMAALAGGSMHPYAALLTGSSAAAAPLGPATKVLKLSNMVVAEELRDDNEYEEIVMDIKEECGKYGQVVSLKVPRPSYKEDGSVDVSPPGVGEVFVEFADEDGATKAGNALRNRQFSGRTVVCEFVKEEDYAGGNL
Sbjct:    1 MPGSEDDASGPGAAALPGEEESQPPAVRTEGEGASEALSSNGTGHKGGDVHEEEGRGKEEMGGPNGKERHGDRDEDEEEVASKEKRRERRRHSSRSRSRSPRGGSRGSRRDKRRSRSRSESPRGDRRRRSRDREGKSSRRSRRSASGSRSLSPPSSRRRRRRERANNWDKPPEGLTVGQGAVTATLQGLGGLGLSGSGAGQFMDPPMLDPGVMMGTAALGAGGVVRGAIGTLTAPTAPPNQQELFNGVMVPTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSATAPPIVGVQVNESKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIVDPPTGVSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGNLKAFNLVKDPALGTSKGFCFFEYLDHALTDRVCAELNGFELGERKLICQRANPSPAPAAAPSMAALAGGSMHPYAALLTGSSAAAAPLGPATKVLKLSNMVVAEELRDDNEYEEIVMDIKEECGKYGQVVSLKVPRPSYKEDGSVDVSPPGVGEVFVEFADEDGATKAGNALRNRQFSGRTVVCEFVKEEDYAGGNL 593          
BLAST of EWM21646.1 vs. NCBI_GenBank
Match: gi|808883035|gb|KKF30294.1| (Splicing factor U2AF [Larimichthys crocea])

HSP 1 Score: 289.656 bits (740), Expect = 1.948e-87
Identity = 192/506 (37.94%), Postives = 258/506 (50.99%), Query Frame = 0
Query:   83 KEKRRERRRHSSRSRSRSPRGGSRGSRRDKRRSRSRSESPRGDRRRRSRDREGKSSRRSRRSASGSRSLSPPSSRRRRRRERANNWDKPPEGLTVGQGAVTATLQGLGGLGLSGSGAGQFMDPPMLDPGVMMGTAALGAGGVVRGAIGTLTAPTAPPNQQELFNGVMVPTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSATAPPIVGVQVNESKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIVDPPTGVSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGNLKAFNLVKDPALGTSKGFCFFEYLDHALTDRVCAELNGFELGERKLICQRANPSPAPAAAPSMAALAGGSMHPYAALLTGSSAAAAPLGPATKVLKLSNMVVAEELRDDNEYEEIVMDIKEECGKYGQVVSLKVPRPSYKEDGSVDVSPPGVGEVFVEFADEDGATKAGNALRNRQFSGRTVVCEFVKEEDY 588
            K  +RER RH  RSRS SP       R DK RS S+    R   +R          RRS        S SP   RR R++     WD PP G           +Q           AGQ     +L      G AA               APT  P         +V + M RQA+RLYVGN+P G  +  + + FN  M  AG   A + P++ VQ+N+ K FAFLE R+ ++    + FDGI      LK+RRP D++PLPGI + P     +PG + T V ++ +K+++G +P + ND QV+EL+++FG LKAFNLVKD A   SKG+ F EY+D + TD+  A LNG +LG++KLI QRA+     A   S+         P    L  S       G  T+VL L NMV+ EEL DD +YEEI+ DI+EEC KYG V S+++PRP    DG   V  PG G++FVE+       KA  AL  R+F+ R VV ++   + Y
Sbjct:   47 KTLQRERERHKKRSRSGSP------GRGDKHRSWSKDRGSRSREKRSRSRDRKSRDRRSSSRDHKKHSHSP---RRTRKKRTCKYWDVPPPGFEHITPMQYKAMQ----------AAGQIPTIALLATSTTTGVAA---------------APTQVP---------IVGSQMTRQARRLYVGNIPFGVTEESMAEFFNAQMRLAGLSQAPSNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYRPLPGISEQPA--FHVPGVVSTVVPDSPHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATSLSKGYAFCEYVDVSATDQAVAGLNGMQLGDKKLIVQRASVGAKNANPTSIIETPVTLQVPGLQRLQNS-------GMPTEVLCLLNMVMPEELVDDEDYEEILEDIREECCKYGSVRSIEIPRPV---DG---VEVPGCGKIFVEYVSAADCQKAMQALTGRKFANRVVVTKYYDPDMY 494          
BLAST of EWM21646.1 vs. NCBI_GenBank
Match: gi|198432988|ref|XP_002130386.1| (PREDICTED: splicing factor U2AF 50 kDa subunit [Ciona intestinalis])

HSP 1 Score: 287.345 bits (734), Expect = 7.958e-87
Identity = 153/343 (44.61%), Postives = 209/343 (60.93%), Query Frame = 0
Query:  252 TMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSATAPPIVGVQVNESKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIVDPPTGVSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGNLKAFNLVKDPALGTSKGFCFFEYLDHALTDRVCAELNGFELGERKLICQRANPSPAPAAAPSMAALAGGSMHPYAALLTGSS------AAAAPLGPATKVLKLSNMVVAEELRDDNEYEEIVMDIKEECGKYGQVVSLKVPRPSYKEDGSVDVSPPGVGEVFVEFADEDGATKAGNALRNRQFSGRTVVCEFVKEEDY 588
            + M RQA+RLYVGN+P G  +  +M  FN  M  AG   A   PI+ VQ+N  K FAFLE R+ ++    L FDGI      LK+RRP D+KPLPG ++ P     +PG + T V+++++K+++G +P + ND QV+EL+++FG L+AFNLVKD A   SKG+ F E+ D++LTD+  A LNG +LG++KLI QRA+               G   +P+ A++   +      A A   GPAT VL L NMV+ EEL DD EYEEI+ D+K+ECGK G VVSL++PRP     G       GVG+++VEFA+     KA  AL  R+FS R VV  F   E Y
Sbjct:  155 SQMTRQARRLYVGNIPFGVTEDAMMDFFNNQMQIAGLAQAPGQPILAVQINLDKNFAFLEFRSVDETTQALAFDGINFMNQSLKIRRPSDYKPLPGSLEQPA--IHLPGVISTVVQDSQHKMFIGGLPNYLNDDQVKELLTSFGPLRAFNLVKDSATALSKGYAFAEFADYSLTDQAIAGLNGMQLGDKKLIVQRAS--------------IGAKNNPHGAIMAPVTLQIPGMAHATGAGPATTVLCLMNMVLPEELTDDEEYEEIMEDVKDECGKLGSVVSLEIPRP-----GPGLTEADGVGKIYVEFANHLDTQKAAQALSGRKFSNRVVVTSFFDPERY 476          
BLAST of EWM21646.1 vs. NCBI_GenBank
Match: gi|1007788995|ref|XP_015830883.1| (PREDICTED: splicing factor U2AF 65 kDa subunit-like [Nothobranchius furzeri])

HSP 1 Score: 286.189 bits (731), Expect = 1.450e-86
Identity = 195/530 (36.79%), Postives = 266/530 (50.19%), Query Frame = 0
Query:   71 GDRDEDEEEVASKEKRRERRRHSSRSRSRSPRGGSRGSRRDKRRSRSRSESPRGDRRRRSRDREGKSSRRSRRSASGSRSLSPPSSRRRRRRERANNWDKPPEGLTVGQGAVTATLQGLGGLGLSGSGAGQFMDPPMLDPGVMMGTAALGAGGVVRGAIGTLTAPTAPPNQQELFNGVMVPTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSATAPPIVGVQVNESKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIVDPPTGVSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGNLKAFNLVKDPALGTSKGFCFFEYLDHALTDRVCAELNGFELGERKLICQR-------ANP-----SPAPAAAPSMAALAGGSMHPYAALLTGSSAAAAPLGPATKVLKLSNMVVAEELRDDNEYEEIVMDIKEECGKYGQVVSLKVPRPSYKEDGSVDVSPPGVGEVFVEFADEDGATKAGNALRNRQFSGRTVVCEFVKEEDY 588
             D DE E++++   + RER RH  RSRS SP  G      DK RS S+    R   +R          RRS        S SP   RR R++     WD PP G           +Q           AGQ     +L      G AA               APT  P         +V + M RQA+RLYVGN+P G  +  + + FN  M  AG   A + P++ VQ+N+ K FAFLE R+ ++    + FDGI      LK+RRP D++PLPG+ + P     +PG + T V ++ +K+++G +P + ND QV+EL+++FG LKAFNLVKD A   SKG+ F EY+D + TD+  A LNG +LG++KLI QR       ANP     +P     P +  L   SM                    T+VL L NMV+ EEL DD +YEEI+ DI+EEC KYG V S+++PRP    DG   V  PG G++FVE+       KA  AL  R+F+ R VV ++   + Y
Sbjct:    2 SDFDEFEKQLSENRQERERERHKKRSRSESPERG------DKHRSWSKDRGSRSREKRSRSRDRKSRDRRSSSRDHKKHSHSP---RRTRKKRICKYWDVPPPGFEHITPMQYKAMQ----------AAGQIPTIALLATSTTTGVAA---------------APTPVP---------IVGSQMTRQARRLYVGNIPFGVTEESMAEFFNAQMRLAGLSQALSNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYRPLPGLSEQPA--FHVPGVVSTVVPDSPHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATSLSKGYAFCEYVDISATDQAVAGLNGMQLGDKKLIVQRASVGAKNANPTSIIETPVTLQVPGLQRLQNTSM-------------------PTEVLCLLNMVMPEELVDDEDYEEILEDIREECCKYGNVRSMEIPRPV---DG---VEVPGCGKIFVEYISAADCQKAMQALTGRKFANRVVVTKYYDPDMY 461          
BLAST of EWM21646.1 vs. NCBI_GenBank
Match: gi|929365407|ref|XP_014092345.1| (PREDICTED: splicing factor U2AF 50 kDa subunit [Bactrocera oleae])

HSP 1 Score: 282.722 bits (722), Expect = 9.141e-86
Identity = 154/347 (44.38%), Postives = 212/347 (61.10%), Query Frame = 0
Query:  249 MVPTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSATAPPIVGVQVNESKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIVD-PPTGVSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGNLKAFNLVKDPALGTSKGFCFFEYLDHALTDRVCAELNGFELGERKLICQRAN------PSPAPAAAPSMAALAGGSMHPYAALLTGSSAAAAPLGPATKVLKLSNMVVAEELRDDNEYEEIVMDIKEECGKYGQVVSLKVPRPSYKEDGSVDVSPPGVGEVFVEFADEDGATKAGNALRNRQFSGRTVVCEFVKEEDY 588
            +V + + RQA+RLYVGN+P G  +  +M+ FNQ M   G   A   P++  Q+N  K FAFLE R+ ++    + FDGI      LK+RRP D++P+PG+ D PP    +  G + T V ++ +KI++G +P + N+ QV+EL+ +FG L+AFNLVKD A G SKG+ F EY+DH++TD+  A LNG +LG++KLI QRA+       + A  AAP M  + G SM        G+S      GP T+VL L NMV  +ELRD+ EYE+I+ DIKEEC KYG V S+++PRP       VDV  PG G+VFVEF       KA  AL  R+FS R VV  +   + Y
Sbjct:   95 VVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLTGLAQAAGSPVLACQINLDKNFAFLEFRSTDETTQAMAFDGINFKGQSLKIRRPHDYQPMPGVADAPPITAPVANGVISTVVPDSPHKIFIGGLPNYLNEEQVKELLLSFGQLRAFNLVKDAATGLSKGYAFSEYVDHSITDQAIAGLNGMQLGDKKLIVQRASVGAKNAQNSATTAAPVMIQVPGMSM-------VGTS------GPPTEVLCLLNMVTPDELRDEEEYEDILEDIKEECNKYGVVRSVEIPRPI----EGVDV--PGCGKVFVEFNSVMDCQKAQQALTGRKFSDRVVVTSYFDPDKY 422          
BLAST of EWM21646.1 vs. NCBI_GenBank
Match: gi|1079784255|ref|XP_018517051.1| (PREDICTED: splicing factor U2AF 65 kDa subunit-like [Lates calcarifer])

HSP 1 Score: 283.878 bits (725), Expect = 1.007e-85
Identity = 194/517 (37.52%), Postives = 265/517 (51.26%), Query Frame = 0
Query:   72 DRDEDEEEVASKEKRRERRRHSSRSRSRSPRGGSRGSRRDKRRSRSRSESPRGDRRRRSRDREGKSSRRSRRSASGSRSLSPPSSRRRRRRERANNWDKPPEGLTVGQGAVTATLQGLGGLGLSGSGAGQFMDPPMLDPGVMMGTAALGAGGVVRGAIGTLTAPTAPPNQQELFNGVMVPTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSATAPPIVGVQVNESKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIVDPPTGVSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGNLKAFNLVKDPALGTSKGFCFFEYLDHALTDRVCAELNGFELGERKLICQRANPSPAPAAAPSMAALAGGSMHPYAALLTGSSAAAAPLGPATKVLKLSNMVVAEELRDDNEYEEIVMDIKEECGKYGQVVSLKVPRPSYKEDGSVDVSPPGVGEVFVEFADEDGATKAGNALRNRQFSGRTVVCEFVKEEDY 588
            D +E E++++   + RER RH  RSRS SP       R DK RS S+    R   +R          RRS        S SP   RR R++     WD PP G           +Q           AGQ     +L      G AA               APT  P         +V + M RQA+RLYVGN+P G  +  + + FN  M  AG   A + P++ VQ+N+ K FAFLE R+ ++    + FDGI      LK+RRP D++PLPGI + P     +PG + T V ++ +K+++G +P + ND QV+EL+++FG LKAFNLVKD A   SKG+ F EY+D + TD+  A LNG +LG++KLI QRA+     A   S+         P    L  S       G  T+VL L NMV+ EEL DD +YEEI+ DI+EEC KYG V S+++PRP    DG   V  PG G++FVE+       KA  AL  R+F+ R VV ++   + Y
Sbjct:    3 DFEEFEKQLSENRQERERERHKKRSRSGSP------GRGDKHRSWSKDRGSRSREKRSRSRDRKSRDRRSSSRDHKKHSHSP---RRTRKKRTCKYWDVPPPGFEHITPMQYKAMQ----------AAGQIPTIALLATSTTTGVAA---------------APTQVP---------IVGSQMTRQARRLYVGNIPFGVTEESMAEFFNAQMRLAGLSQAPSNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYRPLPGISEQPA--FHVPGVVSTVVPDSPHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATSLSKGYAFCEYVDISATDQAVAGLNGMQLGDKKLIVQRASVGAKNANPTSIIETPVTLQVPGLQRLQNS-------GMPTEVLCLLNMVMPEELVDDEDYEEILEDIREECCKYGSVRSIEIPRPV---DG---VEVPGCGKIFVEYVSAADCQKAMQALTGRKFANRVVVTKYYDPDMY 461          
BLAST of EWM21646.1 vs. NCBI_GenBank
Match: gi|657576499|ref|XP_008292034.1| (PREDICTED: splicing factor U2AF 65 kDa subunit-like [Stegastes partitus] >gi|734638238|ref|XP_010747846.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Larimichthys crocea])

HSP 1 Score: 283.878 bits (725), Expect = 1.073e-85
Identity = 194/517 (37.52%), Postives = 265/517 (51.26%), Query Frame = 0
Query:   72 DRDEDEEEVASKEKRRERRRHSSRSRSRSPRGGSRGSRRDKRRSRSRSESPRGDRRRRSRDREGKSSRRSRRSASGSRSLSPPSSRRRRRRERANNWDKPPEGLTVGQGAVTATLQGLGGLGLSGSGAGQFMDPPMLDPGVMMGTAALGAGGVVRGAIGTLTAPTAPPNQQELFNGVMVPTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSATAPPIVGVQVNESKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIVDPPTGVSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGNLKAFNLVKDPALGTSKGFCFFEYLDHALTDRVCAELNGFELGERKLICQRANPSPAPAAAPSMAALAGGSMHPYAALLTGSSAAAAPLGPATKVLKLSNMVVAEELRDDNEYEEIVMDIKEECGKYGQVVSLKVPRPSYKEDGSVDVSPPGVGEVFVEFADEDGATKAGNALRNRQFSGRTVVCEFVKEEDY 588
            D +E E++++   + RER RH  RSRS SP       R DK RS S+    R   +R          RRS        S SP   RR R++     WD PP G           +Q           AGQ     +L      G AA               APT  P         +V + M RQA+RLYVGN+P G  +  + + FN  M  AG   A + P++ VQ+N+ K FAFLE R+ ++    + FDGI      LK+RRP D++PLPGI + P     +PG + T V ++ +K+++G +P + ND QV+EL+++FG LKAFNLVKD A   SKG+ F EY+D + TD+  A LNG +LG++KLI QRA+     A   S+         P    L  S       G  T+VL L NMV+ EEL DD +YEEI+ DI+EEC KYG V S+++PRP    DG   V  PG G++FVE+       KA  AL  R+F+ R VV ++   + Y
Sbjct:    3 DFEEFEKQLSENRQERERERHKKRSRSGSP------GRGDKHRSWSKDRGSRSREKRSRSRDRKSRDRRSSSRDHKKHSHSP---RRTRKKRTCKYWDVPPPGFEHITPMQYKAMQ----------AAGQIPTIALLATSTTTGVAA---------------APTQVP---------IVGSQMTRQARRLYVGNIPFGVTEESMAEFFNAQMRLAGLSQAPSNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYRPLPGISEQPA--FHVPGVVSTVVPDSPHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATSLSKGYAFCEYVDVSATDQAVAGLNGMQLGDKKLIVQRASVGAKNANPTSIIETPVTLQVPGLQRLQNS-------GMPTEVLCLLNMVMPEELVDDEDYEEILEDIREECCKYGSVRSIEIPRPV---DG---VEVPGCGKIFVEYVSAADCQKAMQALTGRKFANRVVVTKYYDPDMY 461          
BLAST of EWM21646.1 vs. NCBI_GenBank
Match: gi|348510219|ref|XP_003442643.1| (PREDICTED: splicing factor U2AF 65 kDa subunit [Oreochromis niloticus] >gi|499007204|ref|XP_004556417.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Maylandia zebra] >gi|548407752|ref|XP_005740017.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Pundamilia nyererei] >gi|554827283|ref|XP_005924249.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Haplochromis burtoni] >gi|584014487|ref|XP_006802021.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Neolamprologus brichardi])

HSP 1 Score: 283.878 bits (725), Expect = 1.096e-85
Identity = 194/517 (37.52%), Postives = 265/517 (51.26%), Query Frame = 0
Query:   72 DRDEDEEEVASKEKRRERRRHSSRSRSRSPRGGSRGSRRDKRRSRSRSESPRGDRRRRSRDREGKSSRRSRRSASGSRSLSPPSSRRRRRRERANNWDKPPEGLTVGQGAVTATLQGLGGLGLSGSGAGQFMDPPMLDPGVMMGTAALGAGGVVRGAIGTLTAPTAPPNQQELFNGVMVPTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSATAPPIVGVQVNESKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIVDPPTGVSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGNLKAFNLVKDPALGTSKGFCFFEYLDHALTDRVCAELNGFELGERKLICQRANPSPAPAAAPSMAALAGGSMHPYAALLTGSSAAAAPLGPATKVLKLSNMVVAEELRDDNEYEEIVMDIKEECGKYGQVVSLKVPRPSYKEDGSVDVSPPGVGEVFVEFADEDGATKAGNALRNRQFSGRTVVCEFVKEEDY 588
            D +E E++++   + RER RH  RSRS SP       R DK RS S+    R   +R          RRS        S SP   RR R++     WD PP G           +Q           AGQ     +L      G AA               APT  P         +V + M RQA+RLYVGN+P G  +  + + FN  M  AG   A + P++ VQ+N+ K FAFLE R+ ++    + FDGI      LK+RRP D++PLPGI + P     +PG + T V ++ +K+++G +P + ND QV+EL+++FG LKAFNLVKD A   SKG+ F EY+D + TD+  A LNG +LG++KLI QRA+     A   S+         P    L  S       G  T+VL L NMV+ EEL DD +YEEI+ DI+EEC KYG V S+++PRP    DG   V  PG G++FVE+       KA  AL  R+F+ R VV ++   + Y
Sbjct:    3 DFEEFEKQLSENRQERERERHKKRSRSGSP------GRGDKHRSWSKDRGSRSREKRSRSRDRKSRDRRSSSRDHKKHSHSP---RRTRKKRTCKYWDVPPPGFEHITPMQYKAMQ----------AAGQIPTIALLATSTTTGVAA---------------APTQVP---------IVGSQMTRQARRLYVGNIPFGVTEESMAEFFNAQMRLAGLSQAPSNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYRPLPGISEQPA--FHVPGVVSTVVPDSPHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATSLSKGYAFCEYVDISATDQAVAGLNGMQLGDKKLIVQRASVGAKNANPTSIIETPVTLQVPGLQRLQNS-------GMPTEVLCLLNMVMPEELVDDEDYEEILEDIREECCKYGTVRSIEIPRPV---DG---VEVPGCGKIFVEYVSAADCQKAMQALTGRKFANRVVVTKYYDPDMY 461          
BLAST of EWM21646.1 vs. NCBI_GenBank
Match: gi|1143390713|ref|XP_019949765.1| (PREDICTED: splicing factor U2AF 65 kDa subunit-like [Paralichthys olivaceus])

HSP 1 Score: 283.108 bits (723), Expect = 1.906e-85
Identity = 190/502 (37.85%), Postives = 256/502 (51.00%), Query Frame = 0
Query:   87 RERRRHSSRSRSRSPRGGSRGSRRDKRRSRSRSESPRGDRRRRSRDREGKSSRRSRRSASGSRSLSPPSSRRRRRRERANNWDKPPEGLTVGQGAVTATLQGLGGLGLSGSGAGQFMDPPMLDPGVMMGTAALGAGGVVRGAIGTLTAPTAPPNQQELFNGVMVPTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSATAPPIVGVQVNESKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIVDPPTGVSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGNLKAFNLVKDPALGTSKGFCFFEYLDHALTDRVCAELNGFELGERKLICQRANPSPAPAAAPSMAALAGGSMHPYAALLTGSSAAAAPLGPATKVLKLSNMVVAEELRDDNEYEEIVMDIKEECGKYGQVVSLKVPRPSYKEDGSVDVSPPGVGEVFVEFADEDGATKAGNALRNRQFSGRTVVCEFVKEEDY 588
            RER RH  RSRS S        R DK RS S+    R   +R          RRS        S SP   RR R+++    WD PP G           +Q           AGQ     +L      G AA               APT  P         +V + M RQA+RLYVGN+P G  +  + + FN  M  AG   A + P++ VQ+N+ K FAFLE R+ ++    + FDGI      LK+RRP D++PLPGI + P     +PG + T V ++ +K+++G +P + ND QV+EL+++FG LKAFNLVKD A   SKG+ F EY+D + TD+  A LNG +LG++KLI QRA+     A   S+         P    L  S       G  T+VL L NMV+ EEL DD +YEEI+ DI+EEC KYG V S+++PRP    DG   V  PG G++FVE+       KA  AL  R+F+ R VV ++   + Y
Sbjct:   15 RERERHKKRSRSGS------VVRVDKHRSWSKDRGSRSREKRSRSRDRKSRDRRSLSRDHKKHSHSP---RRTRKKKTCKYWDVPPPGFEHITPMQYKAMQ----------AAGQIPTIALLATSTTTGVAA---------------APTQVP---------IVGSQMTRQARRLYVGNIPFGVTEESMAEFFNAQMRLAGLSQAPSNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYRPLPGISEQPA--FHVPGVVSTVVPDSPHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATSLSKGYAFCEYVDISATDQAVAGLNGMQLGDKKLIVQRASVGAKNANPTSIIETPVTLQVPGLQRLQNS-------GMPTEVLCLLNMVMPEELVDDEDYEEILEDIREECCKYGSVRSIEIPRPV---DG---VEVPGCGKIFVEYICAADCQKAMQALTGRKFANRVVVTKYYDPDMY 458          
BLAST of EWM21646.1 vs. NCBI_GenBank
Match: gi|1168916946|ref|XP_020501406.1| (splicing factor U2AF 65 kDa subunit-like isoform X3 [Labrus bergylta])

HSP 1 Score: 283.108 bits (723), Expect = 2.166e-85
Identity = 196/517 (37.91%), Postives = 266/517 (51.45%), Query Frame = 0
Query:   72 DRDEDEEEVASKEKRRERRRHSSRSRSRSPRGGSRGSRRDKRRSRSRSESPRGDRRRRSRDREGKSSRRSRRSASGSRSLSPPSSRRRRRRERANNWDKPPEGLTVGQGAVTATLQGLGGLGLSGSGAGQFMDPPMLDPGVMMGTAALGAGGVVRGAIGTLTAPTAPPNQQELFNGVMVPTMMLRQAKRLYVGNVPMGCDQFVLMQLFNQAMVAAGKGSATAPPIVGVQVNESKPFAFLETRTPEDAANVLLFDGITIGANQLKVRRPKDFKPLPGIVDPPTGVSLIPGHLPTSVENTENKIYLGSIPTHFNDLQVRELVSAFGNLKAFNLVKDPALGTSKGFCFFEYLDHALTDRVCAELNGFELGERKLICQRANPSPAPAAAPSMAALAGGSMHPYAALLTGSSAAAAPLGPATKVLKLSNMVVAEELRDDNEYEEIVMDIKEECGKYGQVVSLKVPRPSYKEDGSVDVSPPGVGEVFVEFADEDGATKAGNALRNRQFSGRTVVCEFVKEEDY 588
            D +E E++++   + RER RH  RSRS SP       R DK RS S+    R   +R          RRS        S SP   RR R++     WD PP G           +Q           AGQ            + T AL A      A G   APT  P         +V + M RQA+RLYVGN+P G  +  + + FN  M  AG   A + P++ VQ+N+ K FAFLE R+ ++    + FDGI      LK+RRP D++PLPGI + P     +PG + T V ++ +K+++G +P + ND QV+EL+ +FG LKAFNLVKD A   SKG+ F EY+D   TD+  A LNG +LG++KLI QRA+     A   S+         P   +L  S       G  T+VL L NMV+ EEL +D +YEEI+ DIKEEC KYG V S+++PRP    DG   V  PG G++FVE+       KA  AL  R+F+ R VV ++   + Y
Sbjct:    3 DFEEFEKQLSENRQERERERHKKRSRSGSP------GRGDKHRSWSKERGSRSREKRSRSRERKSRDRRSSSRDHKKHSHSP---RRTRKKRTCKYWDVPPPGFEHITPLQYKAMQ----------AAGQ------------IPTIALLATST---ATGLSAAPTQVP---------IVGSQMTRQARRLYVGNIPFGVTEESMAEFFNAQMRLAGLSQAPSNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYRPLPGISEQPA--FHVPGVVSTVVPDSPHKLFIGGLPNYLNDDQVKELLMSFGPLKAFNLVKDSATSLSKGYAFCEYVDVCATDQAVAGLNGMQLGDKKLIVQRASVGAKNANPTSIIETPVTLQVPGLQMLQNS-------GMPTEVLCLLNMVMPEELVEDEDYEEILEDIKEECCKYGSVRSIEIPRPV---DG---VEVPGCGKIFVEYVSAADCQKAMQALTGRKFANRVVVTKYYDPDMY 461          
The following BLAST results are available for this feature:
BLAST of EWM21646.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101901|gb|EWM21646.1|0.000e+0100.00splicing factor u2af large subunit [Nannochloropsi... [more]
gi|808883035|gb|KKF30294.1|1.948e-8737.94Splicing factor U2AF [Larimichthys crocea][more]
gi|198432988|ref|XP_002130386.1|7.958e-8744.61PREDICTED: splicing factor U2AF 50 kDa subunit [Ci... [more]
gi|1007788995|ref|XP_015830883.1|1.450e-8636.79PREDICTED: splicing factor U2AF 65 kDa subunit-lik... [more]
gi|929365407|ref|XP_014092345.1|9.141e-8644.38PREDICTED: splicing factor U2AF 50 kDa subunit [Ba... [more]
gi|1079784255|ref|XP_018517051.1|1.007e-8537.52PREDICTED: splicing factor U2AF 65 kDa subunit-lik... [more]
gi|657576499|ref|XP_008292034.1|1.073e-8537.52PREDICTED: splicing factor U2AF 65 kDa subunit-lik... [more]
gi|348510219|ref|XP_003442643.1|1.096e-8537.52PREDICTED: splicing factor U2AF 65 kDa subunit [Or... [more]
gi|1143390713|ref|XP_019949765.1|1.906e-8537.85PREDICTED: splicing factor U2AF 65 kDa subunit-lik... [more]
gi|1168916946|ref|XP_020501406.1|2.166e-8537.91splicing factor U2AF 65 kDa subunit-like isoform X... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9097rna9097Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications