rna9096, rna9096 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9096
Unique Name	rna9096
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1476
Alignment location	KK037251.1:321103..323948 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100012g47.1926.mrna
Orig protein id	gnl\|cribi\|Naga_100012g47.1926
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:321103..323948 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g47	gene8820	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9096	rna9096-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21594.1	cds9066	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:321103..323948+
coding sequence from alignment at KK037251.1:321103..323948+

mRNA sequence

>rna9096 ID=rna9096|Name=rna9096|organism=Nannochloropsis gaditana|type=mRNA|length=1476bp
TTTACCCAGGCACAGCAAAGCATCCATCCCTCACCATGTCGCTACACTCC
CGCCCATAAAGCCGTAGGAGCACGAGCTCTAAGAGCCCCGCAACAATATA
TATAAGGACATCAAAATCCTGATTTTTTTATTCCTTGCCTTAGCTAAATC
TTACAGGAAGCACTTGAAGTGACTGAGTTGGGAATGGAAGGGGCATCCTC
TGTACAGCCCCAGGCACCAACCCAGAACTCGCCGCCACGCGTTCTCATCA
CAGGAGGAAATGGTTATGTGGCACAGCATTTGATCAAAGCCCTTCTCCCT
CGCGCCCAGGCCAACGAGATTCGCCTGGCCTACACCTACAATGCCCGGAA
TGGTGTGGATCCGTTGGCGGCTTCTCTCCCTGGCCCCACCAAGGACCACG
TACTCGCCCACCGGGCCGACTTGGAGGACAGCGACAGCCTGCACATGGCG
GTGGCCGCCTGCAAGCCCGACGCGGTGATGCACCTGGCGGCCATGTCCTC
TCCGGCTGCTTGCGCGAGGAACCCGGAGAAGGCGATGCGTGTCAACTGTC
CACTCGCTCTTCTGGACGCGCTAGCCTTGCATAGCCCCGAGGCCCTCCTC
GTCTTCTTCTCAACGGACCAGGTCTTTTCCGGAACCGTATCTCCGCCTGC
ATTATACTCGGAGGCTGGTGAAAGCGGGCGAAGGGAGGAGGAGGAGCCCG
TCAACGTCTACGGGCGGAGCAAGCGGGCCTTTGAGCGAGCCATCCAGGTC
CGGCCTGATCGCACTTTCACGCGCCACTCTTCTTCCCCACGCGTATATGT
GGCCGCGGCCCTCTCTCTGTCGATCTCATCTTCCCCCCCCCCCGTGGACC
TCGCCGTCCCTCAGGACCGCTGGCCCCGACACCTCATCCTTCGCTCCTCC
AACATCATCGGGCCGCCCTCCCCCTTCCTGCGACAGGGAAAGTTTCTGCA
GTGGCTGGATGAGCTGTTGGAGACCTCCGTCGGGCCGCTGGAGCTTTTTG
ACGACGAATGCCGTTCGTTCCTATACTTGCAAGACGTCCTCTCCCTCCTT
TGTGCCCTTCTCGACTCCTATCGCCCCTCCCGCCCTTTAGAAGGGCCCAC
AGCGGGCGGGAACGTGGGTCGGGGGGAACCAATCCTCGGGGCCCGAGAAG
GAGAGGATGCCAAGGACGCGTCGTCTCTCCAGCGCGCGTCTCTTCCTGCC
TCCGCGCGTCTCCTGGTCGGGACCTACAACATGGGAGGGCCTGACGCCTT
GACCAGGGTGGACCTCGGGCGGCTTGTGTGGCGAGCGAGGGGGGGGGAGA
GAGGAGATTGTAGTGGCAGAATCGTTCCCGTGCGTCGAGCAAGCCTGAAC
CTAAATTTCGAGGCACCTTTGAACATTGGGATGGACTCAGGGAAACTGCG
ACAGGACGCAGGGCGGCTGGCCTTTCCGGGAACCTCCATGGAGATTGCGA
TCCCCGAGATACTGAGCCAAAAGTGA

protein sequence of rna9096

>rna9096-protein ID=rna9096-protein|Name=rna9096|organism=Nannochloropsis gaditana|type=polypeptide|length=653bp
MPCLRSVVGRHARACFVVFSLAAMHSFARQGLLQPEDTTLPAPDSSTDAP
PGAKYSLLSFPRAAQWADPQQKCTIVELHNRKGCLFEEKASLPADMDVVI
PTPSSSGSKTNTSGSPFDVPASRSGEQAPWLGQRAPFGPPQSRTWRGRRL
TVSEAVELQPLLDARPLGYNGADVAASLPAPPMAGDKGQPHTLWLLGDTF
LGRMEGRRRIPGYFVHNSVATMPVWNHPSREADPAQVVFWHGLSPPAPFA
ATAEEEKDGCPASLFRTPGERVRGDENECHEGGEYLWPVSGLAVDLAAAP
SNASASRSFASHLLLLATRWAYLPWIEEDVNMTRSVLNFQVLGTTLVVVD
DAHLEPPRWRYRTRDWPGTGPDVNWFQAIALAGEEEGGREGGKQGGLARS
ENELVFLMGTAPEDSAVAEKGGGKGSTRQILGRVPVKGLLDMTLEGMEVW
GRGKAAPAKARAAAQVGATGAKAGDKAGLGRVFLPPAASGAIPSALTGND
GSRSDASEGWGTLSSYMDGSWVATSLLSPVYTGVSLQYSSFLRRWYSVAI
DWLGKQALLQTAESITGPWDSTPIYDLPPPFNDSNLMAYTGKAHPELADN
ENEIVFTYVANTPGVVYPLFEDGADILYVPRFVRIVFDGKEGGKENIRAH
RKK

mRNA from alignment at KK037251.1:321103..323948+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9096 ID=rna9096|Name=rna9096|organism=Nannochloropsis gaditana|type=mRNA|length=2846bp|location=Sequence derived from alignment at KK037251.1:321103..323948+ (Nannochloropsis gaditana)
AAGCTACGTGCATAAAGCGAATTGGCAGGCACATGATTTCTAGCGCACAG
TTGCCCTCAGAAATCTGAAAGCAAATGCTCTGCAGCGCTCTGTTCCGACG
TGACTTCCCTCACGTGTCTTCAACCACCAAAAGATCGAATGCGTCTGTCG
CAAGAATGAATCCCGAAACTCTGCGGACCACATGCTCATATGATCCAAAA
TCCTCATGTTGTTGTTTTGACCGTGGACAGGTAGTCGTAAAGTCGTATCC
GCGGGCCTGCTTCGCCCCTCAAAACCCGAGGCCTCGGACTCGGGtaacga
gaaggagaagggcgcaGCTCAGGCCGCCAAAATGCCATGTTTACGCAGCG
TGGTGGGGCGACATGCTCGCGCCTGCTTCGTTGTCTTTTCTTTGGCGGCG
ATGCACTCCTTCGCGCGTCAGGGACTCCTGCAACCAGAAGACACAACTTT
GCCTGTACGTAGTGAAGTCACCGGCGTCTTATCTAATCCAttcatccttt
tctttgGCAATTTGTCACCTTTGAATGTTCCTGCCATCTTTCTGCAGACG
TCTGAAATATCAAAGAAGGGTCAGTGGAAAAGGGACAAGGCCGGGCGAGA
AAAGCCCCCCTTCTGCCTTGCCATGCACCTATGTACACATGCTGTCCACA
TATATACGTACACACATGCACACTCTGCGAGCCCCCACCCATGGGGGGCA
CTATCTGCCACCCCTCACGCAATGTTGCcttacctctccctccgcccagg
cCCCTGACTCGTCCACGGACGCGCCCCCTGGGGCCAAGTATTCCTTGCTG
TCCTTCCCGCGCGCCGCTCAGTGGGCCGACCCGCAGCAAAAGTGCACCAT
CGTCGAGCTTCACAATCGGAAAGGCTGCCTGTTCGAAGAAAAAGCCAGCT
TACCAGCAGACATGGACGTGGTCATCCCCACGCCAAGtagcagcggcagc
aagaCCAACACCAGCGGCAGCCCCTTCGatgtccccgcctcccgctccgg
GGAACAGGCCCCTTGGCTCGGCCAGCGCGCCCCCTTCGGCCCCCCACAGT
CCCGGACATGGAGAGGCCGGCGCCTGACCGTGAGCGAGGCCGTGGAGCTG
CAGCCATTGCTCGACGCCCGGCCGCTGGGCTACAACGGCGCCGACGTGgc
agcctccctgcccgcccctcccatgGCGGGGGACAAGGGCCAGCCCCACA
CCCTCTGGTTGCTGGGAGACACCTTCttgggaaggatggaggggcggcgg
cggatcCCCGGCTATTTTGTGCACAACAGCGTGGCCACCATGCCGGTGTG
GAACCATCCGAGCCGCGAAGCCGACCCGGCGCAGGTTGTGTTCTGGCACG
gactctcccctcccgccccttttgcggccacggcggaggaagagaaggac
gggTGCCCGGCTTCCCTGTTCCGCACgccgggggagagggtcCGAGGGGA
CGAGAACGAGTGCCACGAGGGCGGAGAGTACCTGTGGCCCGTCTCCGGCC
TGGCCGTGGACCTTGCCGCTGCCCCGAGCaacgcctccgcctcccgctcc
ttcgcctcccatTTGCTGCTCCTGGCCACCCGGTGGGCGTACCTGCCCtg
gatcgaggaggacgtgaacaTGACTCGCTCGGTGCTCAACTTCCAAGTGC
TGGGCACCACCCTGGTCGTCGTGGATGACGCCCACCTCGAACCCCCTCGT
TGGCGGTACCGGACTCGGGACTGGCCGGGAACGGGGCCGGACGTAAACTG
GTTCCAGGCGATAGCcttggccggggaggaggagggcgggcgggagggag
ggaagcagggggggtTGGCCCGGAGCGAGAACGAGCTGGTGTTCCTGATG
GGGACTGCTCCGGAGGACAGCGCGGTAGCcgagaagggcggagggaaagg
atcgACCCGGCAGATTCTGGGACGGGTGCCGGTGAAAGGGCTTTTGGACA
TGACGctggagggaatggaggtatgggggcgggggaaagctGCGCCGGCG
AAGGCCCGGGCGGCGGCCCAAGTCGGGGCCACGGGCGCCAAAGCTGGAGA
TAAAGCCGGCCTAGGGCGAGTTTTTCTACCACCGGCGGCCTCGGGGGCCA
TCCCGTCCGCTTTGACCGGCAACGATGGCTCCAGATCTGACGCCTCCGAG
GGGTGGGGCACCCTCTCCAGTTACATGGACGGATCCTGGGTGGCCACaag
ccttctctcccctgtcTATACGGGCGTCTCATTGCAGTACTCCTCCTTTC
TGAGGCGGTGGTACAGCGTGGCCATCGACTGGCTGGGCAAGCAGGCCTTA
CTGCAGACGGCGGAGAGCATCACGGGGCCGTGGGACTCCACTCCCATCTA
CGacctgccgccgcccttcAACGACAGCAACCTCATGGCCTACACGGGCA
AAGCCCACCCTGAACTTGCAGACAATGAAAATGAGATTGTCTTCACCTAC
GTGGCTAATACGCCAGGAGTGGTCTACCCATTGTTCGAGGACGGGGCCGA
TATTTTGTACGTTCCGCGATTTGTACGTATAGTGTttgatggaaaagaag
ggggaaaagagaataTAAGGGCCCATAGAAAGAAGTAAAGCAGGTGAACC
TTCACTTGGGATCAAAATGGATGTGTAAAAATGCATTTAAATCGGAAAGT
AGGTGATTCAAATGATTgcagaaatggaagaaaatTGAGAACAACGTCAC
CGTTGTTCCACGTCCGCAGATCTCTGCTTTACGCCCACAAAAGGGCCGTG
CCACCTAACAAAATACACTGAAGTGTCGATTGCACGTCCATCACCGCCTC
TTTGCGTCTGCTGCGGGCCTTCGTGACTGTAGAGTGTACGTTTTGG

Coding sequence (CDS) from alignment at KK037251.1:321103..323948+

>rna9096 ID=rna9096|Name=rna9096|organism=Nannochloropsis gaditana|type=CDS|length=3924bp|location=Sequence derived from alignment at KK037251.1:321103..323948+ (Nannochloropsis gaditana)
ATGCCATGTTTACGCAGCGTGGTGGGGCGACATGCTCGCGCCTGCTTCGT
TGTCTTTTCTTTGGCGGCGATGCACTCCTTCGCGCGTCAGGGACTCCTGC
AACCAGAAGACACAACTTTGCCTgcCCCTGACTCGTCCACGGACGCGCCC
CCTGGGGCCAAGTATTCCTTGCTGTCCTTCCCGCGCGCCGCTCAGTGGGC
CGACCCGCAGCAAAAGTGCACCATCGTCGAGCTTCACAATCGGAAAGGCT
GCCTGTTCGAAGAAAAAGCCAGCTTACCAGCAGACATGGACGTGGTCATC
CCCACGCCAAGtagcagcggcagcaagaCCAACACCAGCGGCAGCCCCTT
CGatgtccccgcctcccgctccggGGAACAGGCCCCTTGGCTCGGCCAGC
GCGCCCCCTTCGGCCCCCCACAGTCCCGGACATGGAGAGGCCGGCGCCTG
ACCGTGAGCGAGGCCGTGGAGCTGCAGCCATTGCTCGACGCCCGGCCGCT
GGGCTACAACGGCGCCGACGTGgcagcctccctgcccgcccctcccatgG
CGGGGGACAAGGGCCAGCCCCACACCCTCTGGTTGCTGGGAGACACCTTC
ttgggaaggatggaggggcggcggcggatcCCCGGCTATTTTGTGCACAA
CAGCGTGGCCACCATGCCGGTGTGGAACCATCCGAGCCGCGAAGCCGACC
CGGCGCAGGTTGTGTTCTGGCACGgactctcccctcccgccccttttgcg
gccacggcggaggaagagaaggacgggTGCCCGGCTTCCCTGTTCCGCAC
gccgggggagagggtcCGAGGGGACGAGAACGAGTGCCACGAGGGCGGAG
AGTACCTGTGGCCCGTCTCCGGCCTGGCCGTGGACCTTGCCGCTGCCCCG
AGCaacgcctccgcctcccgctccttcgcctcccatTTGCTGCTCCTGGC
CACCCGGTGGGCGTACCTGCCCtggatcgaggaggacgtgaacaTGACTC
GCTCGGTGCTCAACTTCCAAGTGCTGGGCACCACCCTGGTCGTCGTGGAT
GACGCCCACCTCGAACCCCCTCGTTGGCGGTACCGGACTCGGGACTGGCC
GGGAACGGGGCCGGACGTAAACTGGTTCCAGGCGATAGCcttggccgggg
aggaggagggcgggcgggagggagggaagcagggggggtTGGCCCGGAGC
GAGAACGAGCTGGTGTTCCTGATGGGGACTGCTCCGGAGGACAGCGCGGT
AGCcgagaagggcggagggaaaggatcgACCCGGCAGATTCTGGGACGGG
TGCCGGTGAAAGGGCTTTTGGACATGACGctggagggaatggaggtatgg
gggcgggggaaagctGCGCCGGCGAAGGCCCGGGCGGCGGCCCAAGTCGG
GGCCACGGGCGCCAAAGCTGGAGATAAAGCCGGCCTAGGGCGAGTTTTTC
TACCACCGGCGGCCTCGGGGGCCATCCCGTCCGCTTTGACCGGCAACGAT
GGCTCCAGATCTGACGCCTCCGAGGGGTGGGGCACCCTCTCCAGTTACAT
GGACGGATCCTGGGTGGCCACaagccttctctcccctgtcTATACGGGCG
TCTCATTGCAGTACTCCTCCTTTCTGAGGCGGTGGTACAGCGTGGCCATC
GACTGGCTGGGCAAGCAGGCCTTACTGCAGACGGCGGAGAGCATCACGGG
GCCGTGGGACTCCACTCCCATCTACGacctgccgccgcccttcAACGACA
GCAACCTCATGGCCTACACGGGCAAAGCCCACCCTGAACTTGCAGACAAT
GAAAATGAGATTGTCTTCACCTACGTGGCTAATACGCCAGGAGTGGTCTA
CCCATTGTTCGAGGACGGGGCCGATATTTTGTACGTTCCGCGATTTGTAC
GTATAGTGTttgatggaaaagaagggggaaaagagaataTAAGGGCCCAT
AGAAAGAAGTAAATGCCATGTTTACGCAGCGTGGTGGGGCGACATGCTCG
CGCCTGCTTCGTTGTCTTTTCTTTGGCGGCGATGCACTCCTTCGCGCGTC
AGGGACTCCTGCAACCAGAAGACACAACTTTGCCTgcCCCTGACTCGTCC
ACGGACGCGCCCCCTGGGGCCAAGTATTCCTTGCTGTCCTTCCCGCGCGC
CGCTCAGTGGGCCGACCCGCAGCAAAAGTGCACCATCGTCGAGCTTCACA
ATCGGAAAGGCTGCCTGTTCGAAGAAAAAGCCAGCTTACCAGCAGACATG
GACGTGGTCATCCCCACGCCAAGtagcagcggcagcaagaCCAACACCAG
CGGCAGCCCCTTCGatgtccccgcctcccgctccggGGAACAGGCCCCTT
GGCTCGGCCAGCGCGCCCCCTTCGGCCCCCCACAGTCCCGGACATGGAGA
GGCCGGCGCCTGACCGTGAGCGAGGCCGTGGAGCTGCAGCCATTGCTCGA
CGCCCGGCCGCTGGGCTACAACGGCGCCGACGTGgcagcctccctgcccg
cccctcccatgGCGGGGGACAAGGGCCAGCCCCACACCCTCTGGTTGCTG
GGAGACACCTTCttgggaaggatggaggggcggcggcggatcCCCGGCTA
TTTTGTGCACAACAGCGTGGCCACCATGCCGGTGTGGAACCATCCGAGCC
GCGAAGCCGACCCGGCGCAGGTTGTGTTCTGGCACGgactctcccctccc
gccccttttgcggccacggcggaggaagagaaggacgggTGCCCGGCTTC
CCTGTTCCGCACgccgggggagagggtcCGAGGGGACGAGAACGAGTGCC
ACGAGGGCGGAGAGTACCTGTGGCCCGTCTCCGGCCTGGCCGTGGACCTT
GCCGCTGCCCCGAGCaacgcctccgcctcccgctccttcgcctcccatTT
GCTGCTCCTGGCCACCCGGTGGGCGTACCTGCCCtggatcgaggaggacg
tgaacaTGACTCGCTCGGTGCTCAACTTCCAAGTGCTGGGCACCACCCTG
GTCGTCGTGGATGACGCCCACCTCGAACCCCCTCGTTGGCGGTACCGGAC
TCGGGACTGGCCGGGAACGGGGCCGGACGTAAACTGGTTCCAGGCGATAG
Ccttggccggggaggaggagggcgggcgggagggagggaagcaggggggg
tTGGCCCGGAGCGAGAACGAGCTGGTGTTCCTGATGGGGACTGCTCCGGA
GGACAGCGCGGTAGCcgagaagggcggagggaaaggatcgACCCGGCAGA
TTCTGGGACGGGTGCCGGTGAAAGGGCTTTTGGACATGACGctggaggga
atggaggtatgggggcgggggaaagctGCGCCGGCGAAGGCCCGGGCGGC
GGCCCAAGTCGGGGCCACGGGCGCCAAAGCTGGAGATAAAGCCGGCCTAG
GGCGAGTTTTTCTACCACCGGCGGCCTCGGGGGCCATCCCGTCCGCTTTG
ACCGGCAACGATGGCTCCAGATCTGACGCCTCCGAGGGGTGGGGCACCCT
CTCCAGTTACATGGACGGATCCTGGGTGGCCACaagccttctctcccctg
tcTATACGGGCGTCTCATTGCAGTACTCCTCCTTTCTGAGGCGGTGGTAC
AGCGTGGCCATCGACTGGCTGGGCAAGCAGGCCTTACTGCAGACGGCGGA
GAGCATCACGGGGCCGTGGGACTCCACTCCCATCTACGacctgccgccgc
ccttcAACGACAGCAACCTCATGGCCTACACGGGCAAAGCCCACCCTGAA
CTTGCAGACAATGAAAATGAGATTGTCTTCACCTACGTGGCTAATACGCC
AGGAGTGGTCTACCCATTGTTCGAGGACGGGGCCGATATTTTGTACGTTC
CGCGATTTGTACGTATAGTGTttgatggaaaagaagggggaaaagagaat
aTAAGGGCCCATAGAAAGAAGTAA

Synonyms

Publications