rna9090, rna9090 (mRNA) Nannochloropsis gaditana

Overview
Namerna9090
Unique Namerna9090
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1870
Alignment locationKK037251.1:310477..312064 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100012g41.1969.mrna
Orig protein idgnl|cribi|Naga_100012g41.1969
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:310477..312064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100012g41gene8815Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21637.1cds9060Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9090rna9090-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9090 ID=rna9090|Name=rna9090|organism=Nannochloropsis gaditana|type=mRNA|length=1870bp
GAAGGGGCAGTCAATATTCAGTGTTGTGAGGCTCTGTGCACCCACAAACA
TTTTCAAATGGTAGATCGGCAAGAGTCACGCATTGCTACATGGCTCCATT
AAATTTTGTGGATTGCTGAGGAGTGCTAGGAAAAAGTGAAAAAGAGGGCC
TCAGCGGGTTTGGACTCCATGGCCCCTTCTTGCATGTGCAGTGAAAGCAC
ACGGACGTCGCTTCTACAATCCCCTTTTACTCTTGAATCATTATTAAAAA
TGGGAATCTTACACATTCATTACAAATGGCAATGTCGCTTCCTCAACATA
GGCACACTGTTTTGATGTTGCCGCGGACGTACTCTTCCCCGGGGCGCTAT
GGAAGCAGACGGAACAGCATCAACGATCGTGCCTGGTTACGCGGGGTAAC
AGTAGTTAAGTGGGTATGGCTAGTCGCCTGTATACTTCTTCTCTGCCTCT
CGTTACATTTTTGGGCTGAAACTGTGTGGGTTGGCGTGGACGAAGGAGGG
GGCACAATCCCACTCAGCCAAGCTATCCGCCAGACGTTGCGCCTGGCGAC
CAAGAGGCCTTTGGTAGGGACGAAAGAGAAGCCCTTATTGATCGTAGGAA
CACACCACAAAACTGGAACGGCACTCATGGCTTTGGTTTTGCGAGAAGCG
TTCAGTGTGCACAAGAAGATGACGGGCGGAAAGCCGTCGGGGGTTATGAT
GGGCTATTTCGGGAACCCTGAGACGATGGACGCACCCTTTGCTTTCTACT
ACTGCGACCATCTCTACTCAGACACCTGGAACAAGACGGATAGCAGTAGC
TCTGACCACTTGCCAAAACTCGTGGACAACCACCAATTTTTCAAGGGCCA
CTATAAGTTTGTGCATTTGGTCCGCGACCCCATGGAGTTGGTCATATCAG
CCTATCTGTACCATCACGCCGGCCCTCCCGACTGGCAAGAGGTCTGGCTT
TACGAGCAGCATCCGCTCTCTAGCTACCAGACCATCCTCAACAACTCGTC
CTGTGACCCAGGAACCCGGCTGACCATGTCATGGTTCGATCTCCTCCGGT
GCCTGAACCAGAAAGAGGGCTTGATGGCGGAAGCCCTGTTCCAGACCCAC
TTTGGGGCCGTGCCCTCCATGGTCGCCGCCGTCCAACACATTCAGGGGGA
CCAGAAGCATGCCCAGGTTTTGCAGCTGGGATTGGAGGAATTTCAGTCCG
GGTTCGACGAGACGGTGAGGCGGATGTTCGAGTTCTTGGGCTTCCGTCCA
AGGGTTGTGGAGAGTATCGTCCGGGGATGTGCTCCCTTTGACTTGAGGCG
GCAAAGCTCGGGCGAGAAGGAGAGAAATGAGCACGTGACCACGGGGAAAT
TCGACAAGGAGAAGCTGCGGGAGATGATGAGGAAATACGAGGACCCGGTT
TTCCTGCAGGCCCGGCGTGTGTTGGGGTATGCCGACGAGACGGAGGGAGA
GAAGAAGGGGCGAAAGAGCGCGGCGCTGCTTTGAACAGAACGTCGTCGAT
GTAGGCAGAGTAGATTTGCAGCGCTTAATCAGTTTTCCATAAGATAGTGT
ACATACTGCGGTTGAGAGCCACACGAAAGTTGTTGTGCATAATGAGGAGG
AGTGGGATAACTCACAGCACTGATAGACCAGGCAGAGGTACAGCCTGGGA
CATGTAGGTCAAAGACATAACGCATATATCCTGACAACTTATTTGGAATG
GTGCGCACGAGATGGCGGGAATATGGAGCGAGCGCCAGAGACGCGGGTCG
GGATTGTGTCGAGTCAAAAATGAAAGTAACGTCACGGGTGTGTGGGAAGT
CTGATTGTTGCATCCATTGCAAAGCACGATTTGTAAAGAACTGAAAATAA
TGACACGGTATGGTCGCGAG
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protein sequence of rna9090

>rna9090-protein ID=rna9090-protein|Name=rna9090|organism=Nannochloropsis gaditana|type=polypeptide|length=431bp
MRRSLARSCPSPPSQHQLDRGSRRPSIMRTARSCLTLAMSLVSLVLTTTP
AMAFFNAGVCRQFGTLQPFRPPQPTLSVSARRAAVVMMSDLDRAAKLRQE
AEKLEQELKAVQASRPKPVVTEEKPAGPTPRYLSFEQLKAEVEQAMASSA
VVDTALKQLKESGALTKFESGSAKGFRRYSAEQFEQATGFPPQDVESGGT
QDDLKWALGAVMAASSLAVVGGGFLGGFAGTLLVYLFLLIPITFIGIGSV
APGVISVFVVLVSNLLDGKAAERKTTHQAARFLTGYLLGLPIESVKTDAE
GGTTFIKYYDTMDGNFKDLGAQAAAGPGPEPRKKFGQEDILGHAVLAIAG
SVAERMEYGKVIDRQADFLYLVALMDLVRPSLRAGQKNDLVLYSALTAHK
LLTANKGKLERLAEKMAAKASLAEIVAVMES
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mRNA from alignment at KK037251.1:310477..312064-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9090 ID=rna9090|Name=rna9090|organism=Nannochloropsis gaditana|type=mRNA|length=1588bp|location=Sequence derived from alignment at KK037251.1:310477..312064- (Nannochloropsis gaditana)
TTCTCCTACCCAGAATCACTCCGGTACATTTGCCCAACTCGACTCATGCG
CAGATCCCTCGCCCGATCTTGCCCCTCTCCCCCCTCGCAGCATCAGCTCG
ACAGAGGATCGAGGCGACCCTCCATCATGCGGACAGCCCGGTCCTGCCTT
ACCCTGGCCATGTCCTTAGTCAGTCTGGTATTGACTACGACACCAGCTAT
GGCATTCTTCAACGCGGGGGTCTGCAGGCAATTTGGAACCTTACAACCCT
TCCGTCCTCCCCAACCCACTTTATCCGTCTCCGCCCGGCGCGCAGCCGTG
GTGATGATGAGCGACTTGGACCGTGCTGCCAAGCTCCGTCAGGAAGCTGA
AAAACTTGAGCAAGAGCTCAAGGCTGTGCAAGCTTCGCGGCCCAAGCCTG
TCGTGACGGAAGAGAAGCCCGCGGGCCCCACCCCCCGGTATCTATCCTTT
GAGCAACTCAAAGCAGAAGTCGAGCAAGCCATGGCGTCGTCCGCGGTCGT
TGACACCGCTTTGAAACAATTAAAGGAGTCAGGGGCCCTGACTAAATTTG
AGAGCGGCAGTGCCAAAGGTTTTCGACGGTACAGTGCGGAACAATTCGAG
CAGGCCACCGGGTTTCCCCCCCAGGACGTGGAGTCGGGCGGGACGCAGGA
CGACCTCAAGTGGGCGCTGGGGGCAGTGATGGCGGCGAGCAGTCTCGCGG
TGGTGGGCGGAGGCTTTCTGGGGGGGTTCGCAGGCACCTTGCTCGTGTAC
CTCTTCCTGCTGATCCCTATCACCTTCATCGGGATCGGGTCCGTGGCGCC
AGGCGTGATCTCGGTCTTCGTGGTCCTGGTCAGCAACCTCTTGGACGGGA
AAGCTGCCGAGCGGAAGACAACGCATCAAGCCGCTCGTTTCTTGACTGGG
TACCTGCTGGGGCTTCCCATCGAGTCCGTGAAGACGGACGCCGAGGGTGG
CACCACCTTCATCAAGTACTACGACACTATGGACGGGAATTTCAAAGATT
TGGGTGCCCAAGCAGCGGCGGGACCGGGACCTGAGCCGCGAAAAAAATTT
GGGCAGGAGGATATCTTGGGCCACGCGGTGTTGGCGATCGCGGGAAGCGT
CGCAGAGCGGATGGAGTACGGGAAAGTTATCGACCGGCAGGCGGACTTCT
TGTACCTGGTGGCCCTGATGGATTTGGTCAGACCCTCCTTGCGGGCGGGG
CAAAAGAACGACCTGGTGCTCTACAGTGCCTTAACGGCCCACAAGCTCTT
GACAGCGAACAAGGGTAAGCTGGAGAGGCTGGCGGAGAAGATGGCCGCGA
AGGCCAGTCTGGCCGAGATTGTGGCCGTCATGGAGAGTTAAAGAACACGG
GAGGGGGGGGGGGGTTGAGGGGGGGAACTAGGCACATGGGGTGCCTTTGT
ATGCCAAACTTGGGCGTGGGGTCTATTAGAGAAAGAGAGGGGATCAGGAA
GGAGCGGCGAAGAAAGGAGAGATGACAGCGAAGGGACGGGTGGCGGCTGC
AAGCATGCCTCGCGACCATACCGTGTCATTATTTTCAGTTCTTTACAAAT
CGTGCTTTGCAATGGATGCAACAATCAGACTTCCCACA
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Coding sequence (CDS) from alignment at KK037251.1:310477..312064-

>rna9090 ID=rna9090|Name=rna9090|organism=Nannochloropsis gaditana|type=CDS|length=1296bp|location=Sequence derived from alignment at KK037251.1:310477..312064- (Nannochloropsis gaditana)
ATGCGCAGATCCCTCGCCCGATCTTGCCCCTCTCCCCCCTCGCAGCATCA
GCTCGACAGAGGATCGAGGCGACCCTCCATCATGCGGACAGCCCGGTCCT
GCCTTACCCTGGCCATGTCCTTAGTCAGTCTGGTATTGACTACGACACCA
GCTATGGCATTCTTCAACGCGGGGGTCTGCAGGCAATTTGGAACCTTACA
ACCCTTCCGTCCTCCCCAACCCACTTTATCCGTCTCCGCCCGGCGCGCAG
CCGTGGTGATGATGAGCGACTTGGACCGTGCTGCCAAGCTCCGTCAGGAA
GCTGAAAAACTTGAGCAAGAGCTCAAGGCTGTGCAAGCTTCGCGGCCCAA
GCCTGTCGTGACGGAAGAGAAGCCCGCGGGCCCCACCCCCCGGTATCTAT
CCTTTGAGCAACTCAAAGCAGAAGTCGAGCAAGCCATGGCGTCGTCCGCG
GTCGTTGACACCGCTTTGAAACAATTAAAGGAGTCAGGGGCCCTGACTAA
ATTTGAGAGCGGCAGTGCCAAAGGTTTTCGACGGTACAGTGCGGAACAAT
TCGAGCAGGCCACCGGGTTTCCCCCCCAGGACGTGGAGTCGGGCGGGACG
CAGGACGACCTCAAGTGGGCGCTGGGGGCAGTGATGGCGGCGAGCAGTCT
CGCGGTGGTGGGCGGAGGCTTTCTGGGGGGGTTCGCAGGCACCTTGCTCG
TGTACCTCTTCCTGCTGATCCCTATCACCTTCATCGGGATCGGGTCCGTG
GCGCCAGGCGTGATCTCGGTCTTCGTGGTCCTGGTCAGCAACCTCTTGGA
CGGGAAAGCTGCCGAGCGGAAGACAACGCATCAAGCCGCTCGTTTCTTGA
CTGGGTACCTGCTGGGGCTTCCCATCGAGTCCGTGAAGACGGACGCCGAG
GGTGGCACCACCTTCATCAAGTACTACGACACTATGGACGGGAATTTCAA
AGATTTGGGTGCCCAAGCAGCGGCGGGACCGGGACCTGAGCCGCGAAAAA
AATTTGGGCAGGAGGATATCTTGGGCCACGCGGTGTTGGCGATCGCGGGA
AGCGTCGCAGAGCGGATGGAGTACGGGAAAGTTATCGACCGGCAGGCGGA
CTTCTTGTACCTGGTGGCCCTGATGGATTTGGTCAGACCCTCCTTGCGGG
CGGGGCAAAAGAACGACCTGGTGCTCTACAGTGCCTTAACGGCCCACAAG
CTCTTGACAGCGAACAAGGGTAAGCTGGAGAGGCTGGCGGAGAAGATGGC
CGCGAAGGCCAGTCTGGCCGAGATTGTGGCCGTCATGGAGAGTTAA
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Synonyms
Publications