rna9089, rna9089 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9089
Unique Name	rna9089
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3328
Alignment location	KK037251.1:308687..310556 +

Link to JBrowse

Properties


Property Name	Value
Product	Sulfotransferase domain protein
Orig transcript id	gnl\|cribi\|Naga_100012g40.1970.mrna
Orig protein id	gnl\|cribi\|Naga_100012g40.1970
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:308687..310556 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g40	gene8814	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9089	rna9089-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21638.1	cds9059	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:308687..310556+
coding sequence from alignment at KK037251.1:308687..310556+

mRNA sequence

>rna9089 ID=rna9089|Name=rna9089|organism=Nannochloropsis gaditana|type=mRNA|length=3328bp
TCCCCATCGGAAAGGTCCTACTACCCTCCAATTCCAGCAACCTCTTGATT
TGAATGAAATGGCACGCTGATCAAAATCTTCTTACTTTAATCGCTGACAT
TCTCTTTCAAAACGTAGTTTGGTTTTTGGAATTGTGATTTTGCTTTCAAG
AGGCTTTCTCCTGTCGGGAGAAATCTGTGCTTTTCCCCCTTTTACTATTC
CGCGTGGTATCTTCAGGGGAGTGCTGCAATTGGGTTGACTTTACGAACTC
GACTGTCATGCTTCGACACACCAATTCCAAAAAATGGGGGATATGAGAGC
ACAATCGAATACTTGTCCTCAACTTGCAACCTCAGGCATGACTACTACGA
AAAGCGTGCGAAGTGGCATGCCCTTTTGTTTTTTCCAAACCTTGTCCCCT
ATAATATGGGCCGTCACTATGCTTCAAGCATACCAAGAAAGTAAGGACAT
GATAAATAAATCACACATAATCAAACATCAGCAGATCTGACAAGGAAAGA
TAAATAGGTATGATTGGACTGGACAATCCAATGTACCGAAAAGGATGCCC
AGATCTTCAGACGGATCCAGCGAACGTGCGCTCGTACACGCTTTCCGACC
AGTCGTGTGTTACACAATATTGAATAAGAAGATGCCGATAAAACAATACA
GGGAGTCACAATAGTTGGGGAATCGCAAAACCCTTATGAACGCAAACAAC
AAATGGAAGTGTTTAACTCACGGTGCTAAACGCACAGAGAAAAAGACGAG
TATTTTTTTCCCTTTGCACTTTATATAAGATGTATCTTCTAGACACAGTG
CATTTATGCTAAATAATGGCTCATGTAAACAACGTCGAGGGTGGCCATGG
CATTCGTCAGTGGCCTTTCTACTATGGCAGAGTGATGGGAAAATAACCTC
CTGCCTCCTGGGCAGACAGGCTCGATTGTTCTTGATGTGACACGAAACCT
GCGCACGGCAGCAATGCCGAGATGCACTGCTAGTCATCAGTATCACATCG
CAAACCTCTTATATTTTTGGAATTAACCTGATTTATGTGGCTCACGAATT
ACCCTGCGACTGTTCTGTCCCTCAGTTGCAAGCTCCTACCAGTATGCCGC
CTGGGCCCGTCTGCTCTACCTCCTCCAGACCAAACCTCTCGTGTTTGCCT
GACTGAAATTTCGGACTTTAGTGTGAGGTATACATCAGGAGCTCAGCGCT
CACGGTGCCGCAATGAAACGCAAGGCGGCTTCGCCGCGCAAAACTGCCGC
TCCCTTCTCCTCCTGCTTTGCGGACACAGAAGTCCTGATCCTTGAGGACG
GCGGCATTTCGCCTCACGACATCTCACCTATGCGGGCAGGGCTCCTATTA
AAAAAAATAGAACAACATGGCGGGACTGCTGAGGTGATTCCGGCCAATGA
AGTGCTGGAAGGGCGTCTGCGTGCGCGAGAGCAGCGCGACTCCAAGCTGT
CCCGTGCCACTCACGTCGTCCTCTCTAAAAGCCTTGAGGGCAAAGTCCCC
GCCCTGGTCGAACGCCTTCGTCGTGAAAAAAACAAAGATACAAATGAGAA
CGGTACGATATATGCCCCCTTGCCGTTGACGGTGGGTCGGTCCTGTCAAG
TGGTAAGCCCCGACTGGGTCTCGGACTGTCTGCTTCACAGGCAGCTTGTG
GACCCGCGGCCCTACCTTCTCTCGCTGGACCGTGCAGAAAGGAATGAAGG
GGGAGACGCATATACAGAGGCTGCGACGAAAAGGGAGGAAGCCGCTGAAC
CGACCGCAGGTGGCACCAAGAAGGCCCGCCTTTCCCACCCCTCCGCCTCC
ACTCCCACCGTCGTCTCACCCACCCACGCCGCCATCGAGGCTCGCCTGGC
CCCATTTTCCGACCTGGACCCGACCACACGCGATGCCTTCTTTGCCTACG
GTGGGCCCTTGGTCCTTAGCAAGCCTTTCTCGGCCTCCTTTCCCAAGTTC
GCTTGTCAACGCCCGGCGCCTGCGCAGCACCCGAACCGGCACCTGACGCC
TTTATTTGAGGACCTGGTCGAGATGTACGGCCTGGGGGTGGGGGATAAGG
AGAGAGAAACGGCCTTTGGGCGGGTTCTGGCCGTGCTCCGCGCTTGGCCA
TGGAAAGTGCGGGAAAGCAAGGAATTGAAGGGCATACGTCATGTGGGGGG
AAGCATGAGGGCGGTGATCGAGGAGATCCTGATGACGGGCCGCTGCTCCC
GCCTGGAAAAGTTGCGAGAAGATTCTTCCCATCGCTGCCTCCTTGACCTT
TGCCGCGTCCATCAAGTGGGTCATGCTACTGCCCGGAAGTGGTACGAGGC
GGGCTACAGGAGCGTGGCCCAGATTCAGGCGGACTTGAAGAGGGCGGAGG
AGACAGGTGACGGGGAGGAACAGGCCGGGGGGGAAGTCGAAAGGTATCTG
GGGAGCACGTTTTGTACGAGTCAACGCCCGAGCATGGAGCAACTTCTTGG
GATTTTGTTCGTGGATGAATACAGCGTGAAGATGACCCGCTGTCAGGTGG
CGGCCCTGGAGGGAATCGTGCGCGAGGCAGCCCTGAAAGCTTTGGCCGCA
AGGGGGTTAGGGGCAGAAACCTTGCTGCTTCAGACGTGCGGGGGCTACCT
GCGGGGGAAGGCTCTGAACGGGGACGCAGACGTGCTGGTCTCGTGCACTC
AGGCGCAGGGTCAAGCAGGCCTTCGAGAGGAAATAAAGCGTATCATGCAG
GAAGACATGGGCATCGATCTTCTGATCCTTAAGGAAGGGAATACGATGGG
GGGGTTTGCATCGAAGCCGACCCACGAGAAGATAGCCAGTCACGATAATA
TGCTGACTCTGATCAAGCATGAGGGATTCTACCGTCGCTTGGACGTAATC
TCCCCTCCTCCTGACCAATGGGCCTTCTGTGTCCTCGGATGGTCGGGCTC
CAAGCAAATGGAAAAGGACCTGAGGGATTACGCGGATGAACAGGGCCTGC
ACTTGTCTCAGCAGGCAGTCTTTAGGGAAACAAAGCGACTTACCAATCCG
AAGTCGATCGATGGAGTCTTTCATTCCGAAGAAGATGTTTGGGAGTTTTT
AGGCTTGAAATATTTGCCGCCTCGTCTCAGATGTGCGTAAGGAGATGCAA
AGATGCTTGTCTCATTCAAAGAAGTGCGGGGCGCATTGTTGAAATTGAAT
ATCGGTGTTCTCGAAAGGTCAGCCAAACCTTTCGTGCGGTCGAGAATGTA
CTCAAAGACTTATGAAGTCGAAATAAGACAAAGCTATTGAACAATGCTTG
CAGGGTTTCTAAATGAAAGAAATAGATCTGGGCGCCACACATTTTATATG
AATACGTAGTAGTAGAGGCATGCTCAAA

protein sequence of rna9089

>rna9089-protein ID=rna9089-protein|Name=rna9089|organism=Nannochloropsis gaditana|type=polypeptide|length=402bp
MAMSLPQHRHTVLMLPRTYSSPGRYGSRRNSINDRAWLRGVTVVKWVWLV
ACILLLCLSLHFWAETVWVGVDEGGGTIPLSQAIRQTLRLATKRPLVGTK
EKPLLIVGTHHKTGTALMALVLREAFSVHKKMTGGKPSGVMMGYFGNPET
MDAPFAFYYCDHLYSDTWNKTDSSSSDHLPKLVDNHQFFKGHYKFVHLVR
DPMELVISAYLYHHAGPPDWQEVWLYEQHPLSSYQTILNNSSCDPGTRLT
MSWFDLLRCLNQKEGLMAEALFQTHFGAVPSMVAAVQHIQGDQKHAQVLQ
LGLEEFQSGFDETVRRMFEFLGFRPRVVESIVRGCAPFDLRRQSSGEKER
NEHVTTGKFDKEKLREMMRKYEDPVFLQARRVLGYADETEGEKKGRKSAA
LL

mRNA from alignment at KK037251.1:308687..310556+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9089 ID=rna9089|Name=rna9089|organism=Nannochloropsis gaditana|type=mRNA|length=1870bp|location=Sequence derived from alignment at KK037251.1:308687..310556+ (Nannochloropsis gaditana)
gaaggggcagtcAATATTCAGTGTTGTGAGGCTCTGTGCACCCACAAACA
TTTTCAAATGGTAGATCGGCAAGAGTCACGCATTGCTACATGGCTCCATT
AAATTTTGTGGATTGCTGAGGAGTGCTAGGAAAAAGTGAAAAAGAGGGCC
TCAGCGGGTTTGGACTCCATGGCCCCTTCTTGCATGTGCAGTGAAAGCAC
ACGGACGTCGCTTCTACAATCCCCTTTTACTCTTGAATCATTATTAAAAA
TGGGAATCTTACACATTCATTACAAATGGCAATGTCGCTTCCTCAACATA
GGCACACTGTTTTGATGTTGCCGCGGACGTACTCTTCCCCGGGGCGCTAT
GGAAGCAGACGGAACAGCATCAACGATCGTGCCTGGTTACGCGGGGTAAC
AGTAGTTAAGTGGGTATGGCTAGTCGCCTGTATActtcttctctgcctct
cgTTACATTTTTGGGCTGAAACTGTGTGGGTTGGCgtggacgaaggaggg
ggcacaATCCCACTCAGCCAAGCTATCCGCCAGACGTTGCGCCTGGCGAC
CAAGAGGCCTTTGGTAGGGACGAAAGAGAAGCCCTTATTGATCGTAGGAA
CACACCACAAAACTGGAACGGCACTCATGGCTTTGGTTTTGCGAGAAGCG
TTCAGTGTGCACAAGAAGATGACGGGCGGAAAGCCGTCGGGGGTTATGAT
GGGCTATTTCGGGAACCCTGAGACGATGGACGCACCCTTTGCTTTCTACT
ACTGCGACCATCTCTACTCAGACACCTGGAACAAGACGGATAGCAGTAGC
TCTGACCACTTGCCAAAACTCGTGGACAACCACCAATTTTTCAAGGGCCA
CTATAAGTTTGTGCATTTGGTCCGCGACCCCATGGAGTTGGTCATATCAG
CCTATCTGTACCATCACGCCGGCCCTCCCGACTGGCAAGAGGTCTGGCTT
TACGAGCAGCATCCGCTCTCTAGCTACCAGACCATCCTCAACAACTCGTC
CTGTGACCCAGGAACCCGGCTGACCATGTCATGGTTCGATCTCCTCCGGT
GCCTGAACCAGAAAGAGGGCTTGATGGCGGAAGCCCTGTTCCAGACCCAC
TTTGGGGCCGTGCCCTCCATGGTCGCCGCCGTCCAACACATTCAGGGGGA
CCAGAAGCATGCCCAGGTTTTGCAGCTGGGATTGGAGGAATTTCAGTCCG
GGTTCGACGAGACGGTGAGGCGGATGTTCGAGTTCTTGGGCTTCCGTCCA
AGGGTTGTGGAGAGTATCGTCCGGGGATGTGCTCCCTTTGACTTGAGGCG
GCAAAGctcgggcgagaaggagagaaatgaGCACGTGACCACGGGGAAAT
tcgacaaggagaagctgcGGGAGATGATGAGGAAATACGAGGACCCGGTT
TTCCTGCAGGCCCGGCGTGTGTTGGGGTATGCCgacgagacggagggaga
gaagaaggggcgaAAGAGCGCGGCGCTGCTTTGAACAGAACGTCGTCGAT
GTAGGCAGAGTAGATTTGCAGCGCTTAATCAGTTTTCCATAAGATAGTGT
ACATACTGCGGTTGAGAGCCACACGAAAGTTGTTGTGCATaatgaggagg
agtgggatAACTCACAGCACTGATAGACCAGGCAGAGGTACAGCCTGGGA
CATGTAGGTCAAAGACATAACGCATATATCCTGACAACTTATTTGGAATG
GTGCGCACGAGATGGCGGGAATATGGAGCGAGCGCCAGAGACGCGGGTCG
GGATTGTGTCGAGTCAAAAATGAAAGTAACGTCACGGGTGTGTGGGAAGT
CTGATTGTTGCATCCATTGCAAAGCACGATTTGTAAAGAACTGAAAATAA
TGACACGGTATGGTCGCGAG

Coding sequence (CDS) from alignment at KK037251.1:308687..310556+

>rna9089 ID=rna9089|Name=rna9089|organism=Nannochloropsis gaditana|type=CDS|length=1209bp|location=Sequence derived from alignment at KK037251.1:308687..310556+ (Nannochloropsis gaditana)
ATGGCAATGTCGCTTCCTCAACATAGGCACACTGTTTTGATGTTGCCGCG
GACGTACTCTTCCCCGGGGCGCTATGGAAGCAGACGGAACAGCATCAACG
ATCGTGCCTGGTTACGCGGGGTAACAGTAGTTAAGTGGGTATGGCTAGTC
GCCTGTATActtcttctctgcctctcgTTACATTTTTGGGCTGAAACTGT
GTGGGTTGGCgtggacgaaggagggggcacaATCCCACTCAGCCAAGCTA
TCCGCCAGACGTTGCGCCTGGCGACCAAGAGGCCTTTGGTAGGGACGAAA
GAGAAGCCCTTATTGATCGTAGGAACACACCACAAAACTGGAACGGCACT
CATGGCTTTGGTTTTGCGAGAAGCGTTCAGTGTGCACAAGAAGATGACGG
GCGGAAAGCCGTCGGGGGTTATGATGGGCTATTTCGGGAACCCTGAGACG
ATGGACGCACCCTTTGCTTTCTACTACTGCGACCATCTCTACTCAGACAC
CTGGAACAAGACGGATAGCAGTAGCTCTGACCACTTGCCAAAACTCGTGG
ACAACCACCAATTTTTCAAGGGCCACTATAAGTTTGTGCATTTGGTCCGC
GACCCCATGGAGTTGGTCATATCAGCCTATCTGTACCATCACGCCGGCCC
TCCCGACTGGCAAGAGGTCTGGCTTTACGAGCAGCATCCGCTCTCTAGCT
ACCAGACCATCCTCAACAACTCGTCCTGTGACCCAGGAACCCGGCTGACC
ATGTCATGGTTCGATCTCCTCCGGTGCCTGAACCAGAAAGAGGGCTTGAT
GGCGGAAGCCCTGTTCCAGACCCACTTTGGGGCCGTGCCCTCCATGGTCG
CCGCCGTCCAACACATTCAGGGGGACCAGAAGCATGCCCAGGTTTTGCAG
CTGGGATTGGAGGAATTTCAGTCCGGGTTCGACGAGACGGTGAGGCGGAT
GTTCGAGTTCTTGGGCTTCCGTCCAAGGGTTGTGGAGAGTATCGTCCGGG
GATGTGCTCCCTTTGACTTGAGGCGGCAAAGctcgggcgagaaggagaga
aatgaGCACGTGACCACGGGGAAATtcgacaaggagaagctgcGGGAGAT
GATGAGGAAATACGAGGACCCGGTTTTCCTGCAGGCCCGGCGTGTGTTGG
GGTATGCCgacgagacggagggagagaagaaggggcgaAAGAGCGCGGCG
CTGCTTTGA

Synonyms

Publications