rna9074, rna9074 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9074
Unique Name	rna9074
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1951
Alignment location	KK037251.1:274996..276533 -

Link to JBrowse

Properties


Property Name	Value
Product	Haloacid dehalogenase-like hydrolase
Orig transcript id	gnl\|cribi\|Naga_100012g26.1979.mrna
Orig protein id	gnl\|cribi\|Naga_100012g26.1979
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:274996..276533 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g26	gene8800	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9074	rna9074-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21647.1	cds9044	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:274996..276533-
coding sequence from alignment at KK037251.1:274996..276533-

mRNA sequence

>rna9074 ID=rna9074|Name=rna9074|organism=Nannochloropsis gaditana|type=mRNA|length=1951bp
CGAGGACAGAGTACGTCTCGTGACGTTGGCAACCCAGTCGTCATGACGAA
GAGGAAATCGAAATGACCGTGCTCCAATATTATTCACGACGAATACTTAG
CACAGGCGAGACACCAGTCCTTTGGGTTGTGGATGCTACTACGCAATCAT
TTTCCGGATTCTTACGAAAGCAGCTTTGCTCAGAAAGTATGAAGGAACAC
CACCTGGCGATCCGGGCAAGCACGCTAGCGTGTCTCTTCTGCGTCACGGG
GGCTTTTACAAATCTCCATTTACGCAATGCTCCAAGAGGAAGAATTTCGC
CATCATTGACTACTTTTCCAAGTCGGCTGCATGTGTCTGCCCCATCATCA
TTCCGTCGGTCCGGAAAGCATTGCGTTTTTGCTGGATCGATTGCGCCGGC
GGCTCCTGATGATTTCGAGGATGGTCTACCGCCTGACATACACACAGCCA
CACCGGACACTGACAGTCCGACATCGACCCCTTTCCAGCGCATAGCTGAC
AGTAAACAAGCCGTGCCCACCCTGGCGGCGCTTTTGCGTTTTACTATTCC
CACGCTGGGCATATGGCTGGCCGGGCCGATCATGTCCTTGGTCGATACGA
GCGTGGTGGGCCTTTCCTCCGATTTGGAGCTGGCTGGCATGGGCCCCGCC
ACCAACCTATGCGACTCCTTCATCTATCTCTTCACATTTTTGGCGGTGGC
CACCACAAATCTTCTGGCGGGCGCGCTGGCGGATGGGGACGAAGCCAAGA
GCCAGACTGTGGTCTCGCACGCCCTCGCCATTGCCCTCGGCGCCGGTATC
CTCGTCATGCTTGTCATCGAATTCGCGGGCAAAAGAATGCTAGCTGCGAC
CATCGGTGCGGACGGCCCCCTTCTCATCCCTGTTGCCCTCAAGTACACCA
ACATTCGGGCCCTGGGAGCCCCCTTTGTCTTGGTGGGCATGGTCGCTCAA
TCCTCCCTTCTCGGCGCCAAGGACTCCGTCACACCGCTCCTGGTCACCCT
CGGCGCGGGTGCGATCAATTTAATCCTGGACATGACCCTGGTGTCGTTCG
GAAAGTGCGGCATTGCCGGCGCGGCGGCGGCGACAGTGGTGGCAGAGATA
GTCGGGACTGTCGTCCTCCTCCGGGCCCTGAAACGCGCCCAGGGACCCCG
GCGTTTCTATCCTTTTATCGCCCTCTCTTCCCCCCTTAAGGACATTGCCA
AGTTCTTCACCTTTGCAGGGCCGGTCTTTTTTGCCCTGTTCGGCAAGTCG
CTCTGTTACACCTCCCTGGGCATCGCCGCGCAGATGATGGGTGCCGTGCC
CCTTGCCGCCCATCAGGTCATGCTCCGATGCTTCTTTTTCTTCACTACCT
TCGGCGACTCCCTCTCCACAACGGCTCAAGCCTTCCTCCCCGGCTTTCTG
GTCGACGACAACAAGCTCGCCATCGGGAAGGTGGTGCGGAGGCTCGTCTC
CATCTCCTTGGGGGTGGGCGGTTTGAACGCCATGCTCGCGGGCTTGCTCC
CTTCGTTTTTCCCTGGTCTTTTCACCACCAGTGCCGCCATCGTCGGCCAA
ATGCACTTGATCGCCCCGTGGCTTTCCCTGTGCCTGCTCGCGCACGCCTG
CACCATGGCCCTGGAGGGGACCTTATTGGCAGAGCGGGAGCTCCGATTTC
TCGCGTCCTCCTACGCAATCAACACCTTGCTCGTCCTGGTCGGGCTTCGG
AGGTTGCAGCACGTGGCTGCAGGGATCCAAGGGGTGTGGGCCTGTCTCTT
GTATTTTCAAGTGAGCCGGTGTATCATTTTTGCCCTGCGCCTGCTCAGCA
AGCACGGCCTGCTGCAGCGGGCAAGAAGGCGGGCATCCAGAATGTTCGAG
AGCCTGGGCGGGAGGACTCGAGGACATGGTGGGGACGACCCGAGGATAGG
GGGGGGGGGATTAAGCGTAGTGGACTGAGGCCATGGGTGTACCAGTATGA
C

protein sequence of rna9074

>rna9074-protein ID=rna9074-protein|Name=rna9074|organism=Nannochloropsis gaditana|type=polypeptide|length=308bp
MSRGSTLSLLLIVVSAVALSQAFVSPLSSVYKPATSTQPGQLPHRTVTWL
SAGRASRDWALIFDCDGVILESESLHREAYNTVFREFEIDYRWDEEYYDQ
LQNKVGGGIPKMRYFFGENGWPTSTLGAAPTEEKGRKDMLNALQNRKTDI
YKDMIRGGTAQVRPGVLRLIEEARRLGEDRPKLAICSASTKSSCLFVLDN
LLKPDVLQHFDLILAGDDVKHRKPDPEIYRLASERLAIPASRSVVIEDSL
IGLQAALGAQMPCVITHTASTKAQDFSQARAVFSELGDGNHVQVTARELM
EIALGTPL

mRNA from alignment at KK037251.1:274996..276533-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9074 ID=rna9074|Name=rna9074|organism=Nannochloropsis gaditana|type=mRNA|length=1538bp|location=Sequence derived from alignment at KK037251.1:274996..276533- (Nannochloropsis gaditana)
GACGCTGTTTTGAAGCACGCGTAGCGAACGCATGCAATGTGCGCCGTGGG
AGAATGATGATGTCGTGCTGGATTGGCATTTTGTATGCTGTACTGGTCTG
CGTGAGTCTGCAACATGCGCGAGCGAAGTTGGTAGTCTGTAGGACCTTTT
GAAACCGCAGCATGGGACTTCGTCCCTCCTCTGTGTGACAACACTTACGA
CGCATTTCCCGCAATCCCGCACATGACAGAGGGGGGAAGACTGCCTTCGT
GACTTCTTCTTTACTTCTTGTTACCCCTTCGCTACAGTCTAGGAGCTTTC
GCGTGAGACCAGTCTCCTCATTGCTACAGACGCTCCCGAATGTCTCGAGG
CAGCACTCTCTCCCTCCTGCTGATCGTAGTATCCGCTGTGGCCTTGTCGC
AAGCTTTCGTGTCGCCTCTCTCCTCAGTCTATAAGCCTGCAACCTCGACA
CAGCCTGGACAGCTGCCACACAGGACGGTGACATGGTTGTCTGCCGGCAG
AGCTAGCAGGGACTGGGCATTGATCTTTGATTGCGATGGTGTCATTCTTG
AGGTAGGTGCGTGTTGGAGAGAGATCTCCAGTGCACAGTCTTCTGCAACT
TCTCTTATTCAACCTCACCTCCCCCGACCTTTTTCCCTGCGCTGCATGGG
ACAGTCGGAGTCCTTGCATCGAGAGGCCTACAACACCGTGTTCCGCGAGT
TCGAGATCGACTACCGCTGGGACGAGGAGTACTACGATCAGCTCCAAAAC
AAAGTCGGGGGTGGCATTCCCAAAATGAGGTATTTCTTCGGCGAGAATGG
GTGGCCCACGTCGACTTTGGGCGCGGCCCCCACTGAGGAAAAGGGGAGGA
AAGACATGCTCAACGCGTTACAGAACCGCAAGACAGATATCTATAAGGAC
ATGATCCGTGGCGGGACCGCTCAGGTCCGTCCAGGGGTCTTGCGGTTAAT
CGAGGAGGCACGGAGACTGGGCGAGGACCGGCCAAAACTGGCCATCTGCT
CGGCCTCCACCAAATCCTCCTGCCTCTTCGTACTGGACAACCTGCTCAAG
CCCGACGTACTTCAGCATTTCGACCTCATCCTGGCGGGGGACGACGTCAA
ACACCGGAAACCTGACCCAGAGATCTACCGGTTGGCGAGCGAAAGGTACG
GAGGGATTGGGATTGCTGATCCTGCCCGGGCAGGTCTTTGCTCTCAGGTC
TTTGCTCTCCATTTTGAGCCTCACTTCCCTGGACCTTCGATGCCACCGTT
CCCCCTCCATGCTCCAGGCTGGCCATTCCCGCCTCCCGTTCTGTGGTCAT
CGAGGACAGCCTGATCGGCCTGCAAGCCGCCCTAGGTGCCCAGATGCCCT
GCGTCATCACCCACACAGCCTCCACCAAGGCTCAGGATTTCTCTCAGGCC
CGTGCGGTTTTCTCCGAACTGGGAGATGGCAACCACGTGCAGGTTACGGC
CCGCGAGTTGATGGAGATTGCATTGGGAACACCCTTATGATTGAGGGCGT
AGTGGTGAAAAGAAAGAAAAAAAGATTTGTATATGGTA

Coding sequence (CDS) from alignment at KK037251.1:274996..276533-

>rna9074 ID=rna9074|Name=rna9074|organism=Nannochloropsis gaditana|type=CDS|length=2781bp|location=Sequence derived from alignment at KK037251.1:274996..276533- (Nannochloropsis gaditana)
GCTGGCCATTCCCGCCTCCCGTTCTGTGGTCATCGAGGACAGCCTGATCG
GCCTGCAAGCCGCCCTAGGTGCCCAGATGCCCTGCGTCATCACCCACACA
GCCTCCACCAAGGCTCAGGATTTCTCTCAGGCCCGTGCGGTTTTCTCCGA
ACTGGGAGATGGCAACCACGTGCAGGTTACGGCCCGCGAGTTGATGGAGA
TTGCATTGGGAACACCCTTATGATCGGAGTCCTTGCATCGAGAGGCCTAC
AACACCGTGTTCCGCGAGTTCGAGATCGACTACCGCTGGGACGAGGAGTA
CTACGATCAGCTCCAAAACAAAGTCGGGGGTGGCATTCCCAAAATGAGGT
ATTTCTTCGGCGAGAATGGGTGGCCCACGTCGACTTTGGGCGCGGCCCCC
ACTGAGGAAAAGGGGAGGAAAGACATGCTCAACGCGTTACAGAACCGCAA
GACAGATATCTATAAGGACATGATCCGTGGCGGGACCGCTCAGGTCCGTC
CAGGGGTCTTGCGGTTAATCGAGGAGGCACGGAGACTGGGCGAGGACCGG
CCAAAACTGGCCATCTGCTCGGCCTCCACCAAATCCTCCTGCCTCTTCGT
ACTGGACAACCTGCTCAAGCCCGACGTACTTCAGCATTTCGACCTCATCC
TGGCGGGGGACGACGTCAAACACCGGAAACCTGACCCAGAGATCTACCGG
TTGGCGAGCGAAAGATGTCTCGAGGCAGCACTCTCTCCCTCCTGCTGATC
GTAGTATCCGCTGTGGCCTTGTCGCAAGCTTTCGTGTCGCCTCTCTCCTC
AGTCTATAAGCCTGCAACCTCGACACAGCCTGGACAGCTGCCACACAGGA
CGGTGACATGGTTGTCTGCCGGCAGAGCTAGCAGGGACTGGGCATTGATC
TTTGATTGCGATGGTGTCATTCTTGAGGCTGGCCATTCCCGCCTCCCGTT
CTGTGGTCATCGAGGACAGCCTGATCGGCCTGCAAGCCGCCCTAGGTGCC
CAGATGCCCTGCGTCATCACCCACACAGCCTCCACCAAGGCTCAGGATTT
CTCTCAGGCCCGTGCGGTTTTCTCCGAACTGGGAGATGGCAACCACGTGC
AGGTTACGGCCCGCGAGTTGATGGAGATTGCATTGGGAACACCCTTATGA
TCGGAGTCCTTGCATCGAGAGGCCTACAACACCGTGTTCCGCGAGTTCGA
GATCGACTACCGCTGGGACGAGGAGTACTACGATCAGCTCCAAAACAAAG
TCGGGGGTGGCATTCCCAAAATGAGGTATTTCTTCGGCGAGAATGGGTGG
CCCACGTCGACTTTGGGCGCGGCCCCCACTGAGGAAAAGGGGAGGAAAGA
CATGCTCAACGCGTTACAGAACCGCAAGACAGATATCTATAAGGACATGA
TCCGTGGCGGGACCGCTCAGGTCCGTCCAGGGGTCTTGCGGTTAATCGAG
GAGGCACGGAGACTGGGCGAGGACCGGCCAAAACTGGCCATCTGCTCGGC
CTCCACCAAATCCTCCTGCCTCTTCGTACTGGACAACCTGCTCAAGCCCG
ACGTACTTCAGCATTTCGACCTCATCCTGGCGGGGGACGACGTCAAACAC
CGGAAACCTGACCCAGAGATCTACCGGTTGGCGAGCGAAAGATGTCTCGA
GGCAGCACTCTCTCCCTCCTGCTGATCGTAGTATCCGCTGTGGCCTTGTC
GCAAGCTTTCGTGTCGCCTCTCTCCTCAGTCTATAAGCCTGCAACCTCGA
CACAGCCTGGACAGCTGCCACACAGGACGGTGACATGGTTGTCTGCCGGC
AGAGCTAGCAGGGACTGGGCATTGATCTTTGATTGCGATGGTGTCATTCT
TGAGGCTGGCCATTCCCGCCTCCCGTTCTGTGGTCATCGAGGACAGCCTG
ATCGGCCTGCAAGCCGCCCTAGGTGCCCAGATGCCCTGCGTCATCACCCA
CACAGCCTCCACCAAGGCTCAGGATTTCTCTCAGGCCCGTGCGGTTTTCT
CCGAACTGGGAGATGGCAACCACGTGCAGGTTACGGCCCGCGAGTTGATG
GAGATTGCATTGGGAACACCCTTATGATCGGAGTCCTTGCATCGAGAGGC
CTACAACACCGTGTTCCGCGAGTTCGAGATCGACTACCGCTGGGACGAGG
AGTACTACGATCAGCTCCAAAACAAAGTCGGGGGTGGCATTCCCAAAATG
AGGTATTTCTTCGGCGAGAATGGGTGGCCCACGTCGACTTTGGGCGCGGC
CCCCACTGAGGAAAAGGGGAGGAAAGACATGCTCAACGCGTTACAGAACC
GCAAGACAGATATCTATAAGGACATGATCCGTGGCGGGACCGCTCAGGTC
CGTCCAGGGGTCTTGCGGTTAATCGAGGAGGCACGGAGACTGGGCGAGGA
CCGGCCAAAACTGGCCATCTGCTCGGCCTCCACCAAATCCTCCTGCCTCT
TCGTACTGGACAACCTGCTCAAGCCCGACGTACTTCAGCATTTCGACCTC
ATCCTGGCGGGGGACGACGTCAAACACCGGAAACCTGACCCAGAGATCTA
CCGGTTGGCGAGCGAAAGATGTCTCGAGGCAGCACTCTCTCCCTCCTGCT
GATCGTAGTATCCGCTGTGGCCTTGTCGCAAGCTTTCGTGTCGCCTCTCT
CCTCAGTCTATAAGCCTGCAACCTCGACACAGCCTGGACAGCTGCCACAC
AGGACGGTGACATGGTTGTCTGCCGGCAGAGCTAGCAGGGACTGGGCATT
GATCTTTGATTGCGATGGTGTCATTCTTGAG

Synonyms

Publications