EWM21647.1, cds9044 (CDS) Nannochloropsis gaditana

Overview
NameEWM21647.1
Unique Namecds9044
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:275982..276194 -
Alignment locationKK037251.1:275389..275879 -
Alignment locationKK037251.1:275044..275266 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21647.1
ProductHaloacid dehalogenase-like hydrolase
Orig transcript idgnl|cribi|Naga_100012g26.1979.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:275982..276194 -
KK037251.1supercontigKK037251.1:275389..275879 -
KK037251.1supercontigKK037251.1:275044..275266 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0009507chloroplast
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR023214HAD-like_dom
IPR006439HAD-SF_hydro_IA
Homology
BLAST of EWM21647.1 vs. NCBI_GenBank
Match: gi|553183160|ref|XP_005853850.1| (hypothetical protein NGA_0345402 [Nannochloropsis gaditana CCMP526] >gi|422295209|gb|EKU22508.1| hypothetical protein NGA_0345402 [Nannochloropsis gaditana CCMP526] >gi|585101902|gb|EWM21647.1| Haloacid dehalogenase-like hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 636.721 bits (1641), Expect = 0.000e+0
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0
Query:    1 MSRGSTLSLLLIVVSAVALSQAFVSPLSSVYKPATSTQPGQLPHRTVTWLSAGRASRDWALIFDCDGVILESESLHREAYNTVFREFEIDYRWDEEYYDQLQNKVGGGIPKMRYFFGENGWPTSTLGAAPTEEKGRKDMLNALQNRKTDIYKDMIRGGTAQVRPGVLRLIEEARRLGEDRPKLAICSASTKSSCLFVLDNLLKPDVLQHFDLILAGDDVKHRKPDPEIYRLASERLAIPASRSVVIEDSLIGLQAALGAQMPCVITHTASTKAQDFSQARAVFSELGDGNHVQVTARELMEIALGTPL 308
            MSRGSTLSLLLIVVSAVALSQAFVSPLSSVYKPATSTQPGQLPHRTVTWLSAGRASRDWALIFDCDGVILESESLHREAYNTVFREFEIDYRWDEEYYDQLQNKVGGGIPKMRYFFGENGWPTSTLGAAPTEEKGRKDMLNALQNRKTDIYKDMIRGGTAQVRPGVLRLIEEARRLGEDRPKLAICSASTKSSCLFVLDNLLKPDVLQHFDLILAGDDVKHRKPDPEIYRLASERLAIPASRSVVIEDSLIGLQAALGAQMPCVITHTASTKAQDFSQARAVFSELGDGNHVQVTARELMEIALGTPL
Sbjct:    1 MSRGSTLSLLLIVVSAVALSQAFVSPLSSVYKPATSTQPGQLPHRTVTWLSAGRASRDWALIFDCDGVILESESLHREAYNTVFREFEIDYRWDEEYYDQLQNKVGGGIPKMRYFFGENGWPTSTLGAAPTEEKGRKDMLNALQNRKTDIYKDMIRGGTAQVRPGVLRLIEEARRLGEDRPKLAICSASTKSSCLFVLDNLLKPDVLQHFDLILAGDDVKHRKPDPEIYRLASERLAIPASRSVVIEDSLIGLQAALGAQMPCVITHTASTKAQDFSQARAVFSELGDGNHVQVTARELMEIALGTPL 308          
BLAST of EWM21647.1 vs. NCBI_GenBank
Match: gi|299470552|emb|CBN78540.1| (Haloacid dehalogenase-like hydrolase [Ectocarpus siliculosus])

HSP 1 Score: 345.125 bits (884), Expect = 7.239e-116
Identity = 172/300 (57.33%), Postives = 217/300 (72.33%), Query Frame = 0
Query:    9 LLLIVVSAVALSQAFVSPLSSVYKPATSTQPGQLPHRTVTW-----LSAGRASR-DWALIFDCDGVILESESLHREAYNTVFREFEIDYRWDEEYYDQLQNKVGGGIPKMRYFFGENGWPTSTLGAAPTEEKGRKDMLNALQNRKTDIYKDMIRGGTAQVRPGVLRLIEEARRLGEDRPKLAICSASTKSSCLFVLDNLLKPDVLQHFDLILAGDDVKHRKPDPEIYRLASERLAIPASRSVVIEDSLIGLQAALGAQMPCVITHTASTKAQDFSQARAVFSELGDGNHVQVTARELMEI 302
            +    V A   SQ FV+P+ S     +S++ G  P R  T      L +G +S  +WA+IFDCDGVILESESLHREAYN VFREF +DY W  EYYD+LQNKVGGG PKMRY+FGENGWP S LGA P  ++ +  ++++LQ+RKTDIYK+ +  GTA +RPGV RLI+E + +     K+AICSASTK +CLFVLDNLL  + L  FDL+LAGDDV  RKPDP IY LASE+L +P  R +VIEDSLIGL+AALGA+M CVIT+T ST++QDF+ +  V+ ELGD    QV A EL+++
Sbjct:    5 VFTFAVVAPVFSQGFVAPILST----SSSRDGSAPRRARTSAVSRPLQSGSSSPPEWAVIFDCDGVILESESLHREAYNAVFREFAVDYEWSPEYYDELQNKVGGGKPKMRYYFGENGWPKSKLGAPPETDQEKDLLIDSLQDRKTDIYKEFVANGTAVLRPGVQRLIDETKAISGG--KMAICSASTKDACLFVLDNLLGEENLSKFDLVLAGDDVPRRKPDPMIYALASEKLGVPPERCMVIEDSLIGLEAALGAKMNCVITYTGSTESQDFAGSLGVYPELGDEGSTQVRASELLKL 298          
BLAST of EWM21647.1 vs. NCBI_GenBank
Match: gi|873226092|emb|CEM22042.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 327.791 bits (839), Expect = 2.530e-108
Identity = 160/235 (68.09%), Postives = 181/235 (77.02%), Query Frame = 0
Query:   52 AGRASRDWALIFDCDGVILESESLHREAYNTVFREFEIDYRWDEEYYDQLQNKVGGGIPKMRYFFGENGWPTSTLGAAPTEEKGRKDMLNALQNRKTDIYKDMIRGGTAQVRPGVLRLIEEARRLGEDRPKLAICSASTKSSCLFVLDNLLKPDVLQHFDLILAGDDVKHRKPDPEIYRLASERLAIPASRSVVIEDSLIGLQAALGAQMPCVITHTASTKAQDFSQARAVFSEL 286
            A +AS +WALIFDCDGVI+ESE LHR+AYN +FREF I Y W  EYYD LQN +GGGIPKMR++F ENGWP+STLG  P +  GR+ ML  LQ+RKT IYK  I  GTAQ RPGVLR++EEA R      KLAICSASTKSSCLFVL+NLL  D+L  FDLILAGDDV HRKP PEIY  ASERLAIP SR +VIEDSLIGLQAAL A M CVITHT ST  Q F  A  V++++
Sbjct:   94 ASQASDEWALIFDCDGVIIESEGLHRDAYNAMFREFAIPYEWTPEYYDVLQNMIGGGIPKMRHYFTENGWPSSTLGPPPADTDGREGMLKTLQDRKTIIYKSFISEGTAQPRPGVLRVMEEAMR--TPGTKLAICSASTKSSCLFVLENLLGKDLLSRFDLILAGDDVTHRKPHPEIYHAASERLAIPPSRCLVIEDSLIGLQAALQADMKCVITHTHSTGDQVFDGAEGVYADM 326          
BLAST of EWM21647.1 vs. NCBI_GenBank
Match: gi|302845923|ref|XP_002954499.1| (hypothetical protein VOLCADRAFT_109931 [Volvox carteri f. nagariensis] >gi|300260171|gb|EFJ44392.1| hypothetical protein VOLCADRAFT_109931 [Volvox carteri f. nagariensis])

HSP 1 Score: 263.462 bits (672), Expect = 1.264e-83
Identity = 135/251 (53.78%), Postives = 170/251 (67.73%), Query Frame = 0
Query:   60 ALIFDCDGVILESESLHREAYNTVFREFEID-------YRWDEEYYDQLQNKVGGGIPKMRYFFGENGWPTSTL--GAAPTEEKGRKDMLNALQNRKTDIYKDMIRGGTAQVRPGVLRLIEEARRLGEDRPKLAICSASTKSSCLFVLDNLLKPDVLQHFDLILAGDDVKHRKPDPEIYRLASERLAIPASRSVVIEDSLIGLQAALGAQMPCVITHTASTKAQDFSQARAVFSELGDGNHVQVTARELME 301
            ALIFDCDGVILESE LHR AYN  F+ F++          WDE +YD LQN VGGG PKMR+FF  NGWPTS++  G  P  E+ +  +++ LQ+ KT+ Y+ MI  G  + RPGVLRL++EAR  G    KLA+CSA+TKSS +F L NLL     Q  D  LAGDDV  +KPDP+IY++A+ERL +  +  VV+EDS+IGLQAA GA M C+IT+T STK+Q F  A  +  ELG G    VT +ELME
Sbjct:   43 ALIFDCDGVILESEDLHRRAYNATFKHFKVKCGGEQGYVDWDESFYDMLQNTVGGGKPKMRWFFKRNGWPTSSVLDGRVPASEEEQARLVDTLQDWKTEKYQQMIGSGEVEPRPGVLRLMDEARAAG---LKLAVCSAATKSSVVFTLKNLLGEGRFQGLDCFLAGDDVDKKKPDPKIYKVAAERLGLDPAECVVVEDSMIGLQAATGAGMRCIITYTPSTKSQAFPGAERIVCELG-GYPAMVTVKELME 289          
BLAST of EWM21647.1 vs. NCBI_GenBank
Match: gi|1004144565|gb|KXZ52545.1| (hypothetical protein GPECTOR_9g589 [Gonium pectorale])

HSP 1 Score: 259.996 bits (663), Expect = 8.935e-83
Identity = 132/251 (52.59%), Postives = 170/251 (67.73%), Query Frame = 0
Query:   60 ALIFDCDGVILESESLHREAYNTVFREFEID-------YRWDEEYYDQLQNKVGGGIPKMRYFFGENGWPTSTL--GAAPTEEKGRKDMLNALQNRKTDIYKDMIRGGTAQVRPGVLRLIEEARRLGEDRPKLAICSASTKSSCLFVLDNLLKPDVLQHFDLILAGDDVKHRKPDPEIYRLASERLAIPASRSVVIEDSLIGLQAALGAQMPCVITHTASTKAQDFSQARAVFSELGDGNHVQVTARELME 301
            ALIFDCDGVILESE LHR AYN  F++F++          WDE +YD LQN VGGG PKMR++F  +GWPTS++  G  P  E+ +  +++ LQ+ KTD Y+ MI  G  + RPGVLRL++EAR  G    KLA+CSA+TKSS +F L NLL     +  D  LAGDDV  +KPDP+IY++A+ERL +     VV+EDS+IGLQAA GA M C+IT+T STK+Q F  A  +  +LG G    VT +ELME
Sbjct:    3 ALIFDCDGVILESEDLHRRAYNATFKQFQVKCGGEQGYVDWDESFYDMLQNTVGGGKPKMRWYFKRSGWPTSSVLGGRVPATEQEQDLLIDTLQDWKTDKYQQMIGDGEVEARPGVLRLMDEARAAG---LKLAVCSAATKSSVVFTLKNLLGQGRFEGLDCFLAGDDVDKKKPDPKIYKVAAERLGVSPGECVVVEDSMIGLQAATGAGMRCIITYTPSTKSQAFPGAERIVCDLG-GYPATVTVKELME 249          
BLAST of EWM21647.1 vs. NCBI_GenBank
Match: gi|1026773160|gb|OAE32445.1| (hypothetical protein AXG93_3218s1170 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 262.692 bits (670), Expect = 9.097e-83
Identity = 133/254 (52.36%), Postives = 174/254 (68.50%), Query Frame = 0
Query:   60 ALIFDCDGVILESESLHREAYNTVFREFEID-----YRWDEEYYDQLQNKVGGGIPKMRYFFGENGWPTSTL-GAAPTEEKGRKDMLNALQNRKTDIYKDMIRGGTAQVRPGVLRLIEEARRLGEDRPKLAICSASTKSSCLFVLDNLLKPDVLQHFDLILAGDDVKHRKPDPEIYRLASERLAIPASRSVVIEDSLIGLQAALGAQMPCVITHTASTKAQDFSQARAVFSELGDGNHVQVTARELMEIALGTP 307
            ALIFDCDGVILESE LHR AYN  F  F +        WD E+YD LQN +GGG PKMR++F  NGWPTS+L   AP  E  +  ++++LQ+ KT+ YKD+IR G A+ RPGVL L++EAR +G    KLA+CSA+TKSS +F L NLL  +  +  D  LAGDDVK++KPDP IY++A+E+L     R +V+EDS+IGLQAALGA M CVI++T+ST  QDF+ A A +  LG      V+  EL+++    P
Sbjct:   98 ALIFDCDGVILESEDLHRRAYNLTFEHFNVKCGSKLVDWDTEFYDVLQNTIGGGKPKMRWYFARNGWPTSSLFETAPESEADQSTLIDSLQDWKTEKYKDLIRSG-AEPRPGVLELMDEARSMG---IKLAVCSAATKSSVVFCLTNLLGKERFEQLDCFLAGDDVKNKKPDPSIYKVAAEKLGANPGRCLVVEDSVIGLQAALGAGMTCVISYTSSTSKQDFAGASASYPNLGG-----VSLTELIKVVDSAP 342          
BLAST of EWM21647.1 vs. NCBI_GenBank
Match: gi|302816258|ref|XP_002989808.1| (hypothetical protein SELMODRAFT_447828 [Selaginella moellendorffii] >gi|300142374|gb|EFJ09075.1| hypothetical protein SELMODRAFT_447828 [Selaginella moellendorffii])

HSP 1 Score: 262.692 bits (670), Expect = 2.121e-82
Identity = 131/258 (50.78%), Postives = 177/258 (68.60%), Query Frame = 0
Query:   40 GQLPHRTVTW-LSAG---RASRDWALIFDCDGVILESESLHREAYNTVFREFEID-------YRWDEEYYDQLQNKVGGGIPKMRYFFGENGWPTSTLGAAPTEEKGRKDMLNALQNRKTDIYKDMIRGGTAQVRPGVLRLIEEARRLGEDRPKLAICSASTKSSCLFVLDNLLKPDVLQHFDLILAGDDVKHRKPDPEIYRLASERLAIPASRSVVIEDSLIGLQAALGAQMPCVITHTASTKAQDFSQARAVFSEL 286
            G+   +   W L AG   RAS D AL+FDCDGVILESE LHR AYN  F  FE+          W  E+YD+LQN++GGG PKMR++F  NGWP+S+L ++  ++  +  +++ LQ+ KT+ YKD+I  G  + RPGVLRL++EAR +G    K+A+CSA+TKSS +F L NLL  +  Q  D  LAGDDV+ +KP+P IY++A E+L     + +VIEDS+IGL+AA+GA M CV+T T+ST  QDFS+A AVFS L
Sbjct:  106 GRARQKRAAWNLRAGCGVRASLD-ALVFDCDGVILESEDLHRRAYNATFENFEVRCPGNKSPVVWSTEFYDELQNQIGGGKPKMRWYFNRNGWPSSSLYSSLKDDDAKAQLIDTLQDWKTNKYKDIIASGAVEPRPGVLRLMDEARDMG---IKVAVCSAATKSSVVFCLTNLLGKERFQQLDCFLAGDDVEEKKPNPMIYKVAVEKLGATPDKCIVIEDSVIGLKAAVGAGMKCVVTFTSSTSKQDFSEAAAVFSSL 359          
BLAST of EWM21647.1 vs. NCBI_GenBank
Match: gi|922434014|ref|XP_013623079.1| (PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Brassica oleracea var. oleracea] >gi|923905288|ref|XP_013722743.1| PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Brassica napus])

HSP 1 Score: 258.07 bits (658), Expect = 1.685e-81
Identity = 126/238 (52.94%), Postives = 170/238 (71.43%), Query Frame = 0
Query:   60 ALIFDCDGVILESESLHREAYNTVFREFEI--------DYRWDEEYYDQLQNKVGGGIPKMRYFFGENGWPTSTLGAAPTE-EKGRKDMLNALQNRKTDIYKDMIRGGTAQVRPGVLRLIEEARRLGEDRPKLAICSASTKSSCLFVLDNLLKPDVLQHFDLILAGDDVKHRKPDPEIYRLASERLAIPASRSVVIEDSLIGLQAALGAQMPCVITHTASTKAQDFSQARAVFSELGD 288
            ALIFDCDGVILESE+LHR+AYN  F  F++           W  E+YD+ QN VGGG PKMR++F ENGWPTSTL  +P E + GR  +++ LQ+ KT+ YK++I+ G+ + RPGV+RL++EAR  G+   KLA+CSA+TKSS +  L+NL++ +  Q  D  LAGDDVK +KPDP IY  A+E+L +  +  +VIEDS+IGLQAA  A M CVIT+T+ST  QDF +A AV+ +L +
Sbjct:   56 ALIFDCDGVILESENLHRQAYNDAFAHFDVRCPPSSSESLNWSLEFYDKFQNLVGGGKPKMRWYFRENGWPTSTLFDSPPESDDGRAKLIDTLQDWKTERYKEIIKSGSVEARPGVIRLMDEARAAGK---KLAVCSAATKSSVILCLENLIQIERFQGLDCFLAGDDVKEKKPDPSIYITAAEKLGVSVNDCLVIEDSVIGLQAATKAGMSCVITYTSSTSDQDFKEAIAVYPDLTN 290          
BLAST of EWM21647.1 vs. NCBI_GenBank
Match: gi|116791022|gb|ABK25826.1| (unknown [Picea sitchensis])

HSP 1 Score: 258.07 bits (658), Expect = 2.996e-81
Identity = 126/236 (53.39%), Postives = 165/236 (69.92%), Query Frame = 0
Query:   61 LIFDCDGVILESESLHREAYNTVFREFEI-------DYRWDEEYYDQLQNKVGGGIPKMRYFFGENGWPTSTL-GAAPTEEKGRKDMLNALQNRKTDIYKDMIRGGTAQVRPGVLRLIEEARRLGEDRPKLAICSASTKSSCLFVLDNLLKPDVLQHFDLILAGDDVKHRKPDPEIYRLASERLAIPASRSVVIEDSLIGLQAALGAQMPCVITHTASTKAQDFSQARAVFSELGD 288
            LIFDCDGVILESE LHR AYN  F +F +          WD E+YDQLQN++GGG PKMR++F ENGWP+ST+    P  E  +  +++ LQ  KT+ YKD+IR GT + RPGVL+L++E R  G    KLA+CSA+TKSS +  L+NLL  +  Q  D  LAGDDVK +KPDP IY  A++RL   A   +V+EDS+IGLQAA+GA M CVI++T+STK QDF  A+A++ +L +
Sbjct:   83 LIFDCDGVILESEHLHRNAYNATFTQFNVCCPSSSKPVDWDAEFYDQLQNQIGGGKPKMRWYFNENGWPSSTIFETPPANETDQVKLIDILQEWKTEKYKDIIRSGTVKPRPGVLQLMDETRAAG---IKLAVCSAATKSSVILCLENLLGLERFQQLDCFLAGDDVKKKKPDPSIYLEAAKRLGKSAKNCLVVEDSVIGLQAAIGAGMACVISYTSSTKDQDFKGAKAIYPDLSN 315          
BLAST of EWM21647.1 vs. NCBI_GenBank
Match: gi|470105886|ref|XP_004289309.1| (PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Fragaria vesca subsp. vesca])

HSP 1 Score: 256.529 bits (654), Expect = 6.306e-81
Identity = 125/236 (52.97%), Postives = 170/236 (72.03%), Query Frame = 0
Query:   60 ALIFDCDGVILESESLHREAYNTVFREFEIDYR------WDEEYYDQLQNKVGGGIPKMRYFFGENGWPTSTLGAAPTEE-KGRKDMLNALQNRKTDIYKDMIRGGTAQVRPGVLRLIEEARRLGEDRPKLAICSASTKSSCLFVLDNLLKPDVLQHFDLILAGDDVKHRKPDPEIYRLASERLAIPASRSVVIEDSLIGLQAALGAQMPCVITHTASTKAQDFSQARAVFSELGD 288
            ALIFDCDGVILESE LHR+AYN  F  F +         WD ++YDQLQN++GGG PKMR++F ENGWP+ST+   P E+ +GR  +++ LQ+ KT+ YK++I+ GT + RPGVLRL++EA+  G+   KLA+CSA+TKSS +  L++L+  +  Q  D  LAGDDVK +KPDP IY  A++RL I AS  +V+EDS+IGLQAA  A M CVI++T+ST  QDF  A A++ +L +
Sbjct:   53 ALIFDCDGVILESEHLHRQAYNDAFAHFNVRCSSSQPLVWDPDFYDQLQNQIGGGKPKMRWYFKENGWPSSTIFEKPPEDDEGRAKIIDTLQDWKTERYKEIIKSGTVEPRPGVLRLMDEAKAAGK---KLAVCSAATKSSVILCLESLIGNERFQGLDCFLAGDDVKEKKPDPSIYLTAAKRLGISASDCLVVEDSVIGLQAATKAGMSCVISYTSSTADQDFKDAIAIYPDLSN 285          
The following BLAST results are available for this feature:
BLAST of EWM21647.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553183160|ref|XP_005853850.1|0.000e+0100.00hypothetical protein NGA_0345402 [Nannochloropsis ... [more]
gi|299470552|emb|CBN78540.1|7.239e-11657.33Haloacid dehalogenase-like hydrolase [Ectocarpus s... [more]
gi|873226092|emb|CEM22042.1|2.530e-10868.09unnamed protein product [Vitrella brassicaformis C... [more]
gi|302845923|ref|XP_002954499.1|1.264e-8353.78hypothetical protein VOLCADRAFT_109931 [Volvox car... [more]
gi|1004144565|gb|KXZ52545.1|8.935e-8352.59hypothetical protein GPECTOR_9g589 [Gonium pectora... [more]
gi|1026773160|gb|OAE32445.1|9.097e-8352.36hypothetical protein AXG93_3218s1170 [Marchantia p... [more]
gi|302816258|ref|XP_002989808.1|2.121e-8250.78hypothetical protein SELMODRAFT_447828 [Selaginell... [more]
gi|922434014|ref|XP_013623079.1|1.685e-8152.94PREDICTED: haloacid dehalogenase-like hydrolase do... [more]
gi|116791022|gb|ABK25826.1|2.996e-8153.39unknown [Picea sitchensis][more]
gi|470105886|ref|XP_004289309.1|6.306e-8152.97PREDICTED: haloacid dehalogenase-like hydrolase do... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9074rna9074Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications