rna9057, rna9057 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9057
Unique Name	rna9057
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2035
Alignment location	KK037251.1:228675..229968 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100012g9.1894.mrna
Orig protein id	gnl\|cribi\|Naga_100012g9.1894
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:228675..229968 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g9	gene8784	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9057	rna9057-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21562.1	cds9027	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:228675..229968+
coding sequence from alignment at KK037251.1:228675..229968+

mRNA sequence

>rna9057 ID=rna9057|Name=rna9057|organism=Nannochloropsis gaditana|type=mRNA|length=2035bp
GCGTGTTGGGCGCGTGAAGAAGACCAGCAGTTCCCAGCTTACTAGACGTC
GAGCGGATTGAAACGAGTAATAAACATACCAAGGCTTTTTTTTGTCCATT
TGATATTCGAATATCCTTTTTGTCACGGCGGACACTGGATCGGAAGAACA
GTTGTGTGTGTCTTGGAGCTTCATGTAACAGCGCTTGCGAGCAGGTGATG
ATTCCTTATCTAATCCTATTTTTTTCCATCCTTGTCGCTCAAACGTTGAG
AATCAATTACATCAAGGATTCTCCTTGATTATTCGTTTCGTCTGCATCGC
TTTCGGGTCTCAAGGGGCCATGATCTTCCGATATCCAGGATACTTTACCT
CTGCTCAGCTACCTCCCCCTCCCCTATCTTGTGCCCGCCCCACCTCATCA
AGCAGGCCGATATCCTGGATAACTCAGCAATTCTGATAGTGTAAAACTCG
GATATAAAAGTGAAGGATGAATCAGAGGAGCGGAATCGACCATCATCACA
TCTACTCGACCGAGACCAAAGAGGAAGAAAATGGAGGTCGGGATATTCTG
CCCTTGGAAATGGAAGACGGCCGTAAGGCCGAGTCTGCCCCCCCGGCCGA
GGTTAAAAAGCGCGGTTTTTGCGCTCGGCACAAAGGGAAACTGATTTTTC
TTGGCATAGTTGCCTTGATTCTCATTGCCTTGGCCATCGCCATTCCTTTG
CTCATGCCAAAGGACCCGACGGCGACTTTGCTAGAGCAAAGCAACTTGCG
GTTGGACGGTTTGGGAGCGGGAAGCGCGACGATAGACCTGACCATGAAAG
TGCAGAATCCAAACCCGTATGCGATCGCTTTTGAAGACCTCCGGCTCGAT
GTTTACGATTTCAGCGGTGCGCACATTGGCGAGCTGACACGACCCGAGCG
ATTCCGTGTCCAGGGCCGGTCTACGAACATCATGAATGCCACCGCCACCA
TGCAGCCTTCCTTCTTTGAGATCCTCTCCATGGGCGTGAACTGCCTGCAG
AACGACAACCTGACGAAGCTTAAGCTCCAAGGCACTGTGCAAGCGCGCTT
CGCGGGCAGGACGTTTCGCACACAGGTGGGCCCGATGGAGCAGCTGACGC
AGTGCGTGGCGACCAACATTGCCGGTGGATCATCCCCTCCGCCCCCGGGG
GTGACCCCTGCAGCGGTGGGAAATGGGCAGATTATCAACAGTATAGGAGA
AGCGATCAGCCAGGGGATTCAGCGGCTTCGAGGGGGGCGACAGGGGGCGG
CCAGCCAGGTCTCGGCGGCCCCCGGGAACAGGGGGCCCAACCCCGTGGCG
AGCTCCCCGTTCCCGGGATCACGACGATCCGACCCGATAAATTCCATGCC
TGGGACTGCTACGTCTGGGGCACCATTCTCAAACACACAGAACACGGCAG
GTGTGCAGCCTTAATTTAAGGAGATCGGGCCGTCGAGTGTATGAGGGAAG
GAGGAAATGGCGGCCACGGCGATTAACGCAGGAATGGCGTCTTTTAGCAA
AGGAGCAGTTTTCCTCCTGCTGACCGTTATAGGGTAAAAATATATATTCT
ACGTGGTGCGAGGTTGTCTTTTCACTAAGAGGATGCCGAATAGTGGCGTG
TTATGAGTTGTTGGGACGACGGCGCTTGTGTGCCGTTGGTTTTTCGGGGT
TTTGTTTTTCAACGATTGATTTGACAGCGTTTTGAGTGTGAATGTTTGCC
TAAAAGTAATGATGCACAGCAGAAAAGGGGTATATAAAAGATGTACGTGG
CCCTTGGGGTCTCAAAATTGAACAGTTGAAAGTCAAACGGACGCAGGGGG
AAATGAAAGCGCAGTCTCAACGACACAAACCTGCCAGCTTTCGGGCGTGA
AGTACAGCCACTGAAATTTTTTTCAGTCGTCTTTAAGCGATAGCATGATC
TGAAGTGAGACAGAAGTGAACGAAGACGACAGCGAAGAAGGAAGACTTAC
AGAAGAGGGCCTTCCCAGTGGCATCTTTACCCCGCCGAAGCGAGAAGAGC
CAGGAACTTAATTACTTTTCCTCATCTGAATGAGT

protein sequence of rna9057

>rna9057-protein ID=rna9057-protein|Name=rna9057|organism=Nannochloropsis gaditana|type=polypeptide|length=313bp
MKLTSPSAVIAGVVFFLSCKHLLTSAWIGPFATAPSASLPRDPPPVVICP
GFGNDQIDYLNPMNLGEEAGMVQALRRRGFPVYVVPVKRTDWLKFANGLF
TPSFWSQTMTPRDLSFGWYLNKVVQTVERAASEHPGRKALVVGHSAGGWL
ARAALGDGAWTGKAAKEVRDLVQGCVTLGTPHLPPAPPGVCVTRGALGHV
HLNYPGAFLKPQGLFYMTVAGVAVEGRREPQGAGRRERRGGSIEDFAFRS
YVQVCGRGDVVGDGVVPLEAAHLEGAKQVNLQNVFHSINAPKAWYGSEEV
IDSWLGEVEGIRY

mRNA from alignment at KK037251.1:228675..229968+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9057 ID=rna9057|Name=rna9057|organism=Nannochloropsis gaditana|type=mRNA|length=1294bp|location=Sequence derived from alignment at KK037251.1:228675..229968+ (Nannochloropsis gaditana)
ATGAAGCTTACTTCCCCATCAGCTGTGATTGCTGGAgttgttttcttcct
ttcctgtaAACATTTGTTGACCAGCGCATGGATAGGTCCTTTCGCAACAG
CACCATCGGCCTCATTACCTCGGGACCCGCCACCCGTTGTCATATGTCCT
GGTAAGCATGTATTAAACTCGCAATGCCTGGCAGTAGAATAGTCACCCTT
TTTACTTTTTCGCGGCGCTAAACAACGTCTCCAAGCCTCCTCGCCACGCT
CACTcgtgcattttttggggtcCCGGCAGGTTTTGGCAATGACCAGATTG
ACTACCTCAATCCCATGAATCTCGGCGAAGAAGCAGGCATGGTGCAGGCG
TTACGCCGCCGTGGGTTCCCTGTTTATGTTGTGCCTGTGAAACGCACAGA
CTGGCTGAAGGTGAGCATGTATATGGCCTGGTCGGAGCCCGTGATGatat
ttccctcttcctgtctAATCATGGAGAGGGTTAAAGCAGCGGCCCACAGC
GCGCACAGGTGAATTCAGTGCCTCATCTCATCCTGCTCATTTATTCTTTT
TCAACTTcctttctttgtcctccctttcatcccGCGGCCTTCCCTCGCTG
CTTCGGCACTATCTCCCTCGTAAATGCCTAACAGTTTGCCAATGGCCTGT
TCACGCCATCCTTCTGGTCTCAGACGATGACACCCCGCGACCTCTCTTTC
GGATGGTACTTGAACAAGGTGGTGCAAACTGTCGAGAGGGCCGCGTCGGA
GCATCCTGGACGCAAAGCCTTGGTGGTCGGGCACAGCGCGGGCGGATGGC
TGGCTCGGGCGGCCTTGGGGGACGGGGCATGGACAGGAAAAGCCGCCAAG
GAGGTCAGAGACCTTGTTCAAGGTTGTGTGACGTTAGGAACCCCCCactt
gcctcctgccccgcccggcGTCTGCGTCACTCGCGGAGCCCTGGGTCACG
TCCATCTCAACTACCCGGGAGCCTTCCTGAAGCCCCAAGGCCTTTTTTAC
ATGACCGTGGCGGgggtggccgtggagggacggagggagccgcagggggc
agggcggagggagaggaggggcgggagcatCGAGGACTTCGCCTTCCGCT
CCTACGTGCAGGTCTGTGGGCGTGGCGACGTGGTCGGCGACGGCGTGGTC
CCCTTGGAAGCGGCCCATTTGGAGGGGGCCAAACAAGTGAACCTGCAGAA
TGTCTTCCACTCCATCAACGCGCCTAAGGCGTGGtatgggagcgaggagg
tgatCGACTCGtggctgggggaggtggagggtaTTCGGTATtga

Coding sequence (CDS) from alignment at KK037251.1:228675..229968+

>rna9057 ID=rna9057|Name=rna9057|organism=Nannochloropsis gaditana|type=CDS|length=2826bp|location=Sequence derived from alignment at KK037251.1:228675..229968+ (Nannochloropsis gaditana)
ATGAAGCTTACTTCCCCATCAGCTGTGATTGCTGGAgttgttttcttcct
ttcctgtaAACATTTGTTGACCAGCGCATGGATAGGTCCTTTCGCAACAG
CACCATCGGCCTCATTACCTCGGGACCCGCCACCCGTTGTCATATGTCCT
GGTTTTGGCAATGACCAGATTGACTACCTCAATCCCATGAATCTCGGCGA
AGAAGCAGGCATGGTGCAGGCGTTACGCCGCCGTGGGTTCCCTGTTTATG
TTGTGCCTGTGAAACGCACAGACTGGCTGAAGTTTGCCAATGGCCTGTTC
ACGCCATCCTTCTGGTCTCAGACGATGACACCCCGCGACCTCTCTTTCGG
ATGGTACTTGAACAAGGTGGTGCAAACTGTCGAGAGGGCCGCGTCGGAGC
ATCCTGGACGCAAAGCCTTGGTGGTCGGGCACAGCGCGGGCGGATGGCTG
GCTCGGGCGGCCTTGGGGGACGGGGCATGGACAGGAAAAGCCGCCAAGGA
GGTCAGAGACCTTGTTCAAGGTTGTGTGACGTTAGGAACCCCCCacttgc
ctcctgccccgcccggcGTCTGCGTCACTCGCGGAGCCCTGGGTCACGTC
CATCTCAACTACCCGGGAGCCTTCCTGAAGCCCCAAGGCCTTTTTTACAT
GACCGTGGCGGgggtggccgtggagggacggagggagccgcagggggcag
ggcggagggagaggaggggcgggagcatCGAGGACTTCGCCTTCCGCTCC
TACGTGCAGGTCTGTGGGCGTGGCGACGTGGTCGGCGACGGCGTGGTCCC
CTTGGAAGCGGCCCATTTGGAGGGGGCCAAACAAGTGAACCTGCAGAATG
TCTTCCACTCCATCAACGCGCCTAAGGCGTGGtatgggagcgaggaggtg
atCGACTCGtggctgggggaggtggagggtaTTCGGTATtgaATGAAGCT
TACTTCCCCATCAGCTGTGATTGCTGGAgttgttttcttcctttcctgta
AACATTTGTTGACCAGCGCATGGATAGGTCCTTTCGCAACAGCACCATCG
GCCTCATTACCTCGGGACCCGCCACCCGTTGTCATATGTCCTGGTTTTGG
CAATGACCAGATTGACTACCTCAATCCCATGAATCTCGGCGAAGAAGCAG
GCATGGTGCAGGCGTTACGCCGCCGTGGGTTCCCTGTTTATGTTGTGCCT
GTGAAACGCACAGACTGGCTGAAGTTTGCCAATGGCCTGTTCACGCCATC
CTTCTGGTCTCAGACGATGACACCCCGCGACCTCTCTTTCGGATGGTACT
TGAACAAGGTGGTGCAAACTGTCGAGAGGGCCGCGTCGGAGCATCCTGGA
CGCAAAGCCTTGGTGGTCGGGCACAGCGCGGGCGGATGGCTGGCTCGGGC
GGCCTTGGGGGACGGGGCATGGACAGGAAAAGCCGCCAAGGAGGTCAGAG
ACCTTGTTCAAGGTTGTGTGACGTTAGGAACCCCCCacttgcctcctgcc
ccgcccggcGTCTGCGTCACTCGCGGAGCCCTGGGTCACGTCCATCTCAA
CTACCCGGGAGCCTTCCTGAAGCCCCAAGGCCTTTTTTACATGACCGTGG
CGGgggtggccgtggagggacggagggagccgcagggggcagggcggagg
gagaggaggggcgggagcatCGAGGACTTCGCCTTCCGCTCCTACGTGCA
GGTCTGTGGGCGTGGCGACGTGGTCGGCGACGGCGTGGTCCCCTTGGAAG
CGGCCCATTTGGAGGGGGCCAAACAAGTGAACCTGCAGAATGTCTTCCAC
TCCATCAACGCGCCTAAGGCGTGGtatgggagcgaggaggtgatCGACTC
GtggctgggggaggtggagggtaTTCGGTATtgaATGAAGCTTACTTCCC
CATCAGCTGTGATTGCTGGAgttgttttcttcctttcctgtaAACATTTG
TTGACCAGCGCATGGATAGGTCCTTTCGCAACAGCACCATCGGCCTCATT
ACCTCGGGACCCGCCACCCGTTGTCATATGTCCTGGTTTTGGCAATGACC
AGATTGACTACCTCAATCCCATGAATCTCGGCGAAGAAGCAGGCATGGTG
CAGGCGTTACGCCGCCGTGGGTTCCCTGTTTATGTTGTGCCTGTGAAACG
CACAGACTGGCTGAAGTTTGCCAATGGCCTGTTCACGCCATCCTTCTGGT
CTCAGACGATGACACCCCGCGACCTCTCTTTCGGATGGTACTTGAACAAG
GTGGTGCAAACTGTCGAGAGGGCCGCGTCGGAGCATCCTGGACGCAAAGC
CTTGGTGGTCGGGCACAGCGCGGGCGGATGGCTGGCTCGGGCGGCCTTGG
GGGACGGGGCATGGACAGGAAAAGCCGCCAAGGAGGTCAGAGACCTTGTT
CAAGGTTGTGTGACGTTAGGAACCCCCCacttgcctcctgccccgcccgg
cGTCTGCGTCACTCGCGGAGCCCTGGGTCACGTCCATCTCAACTACCCGG
GAGCCTTCCTGAAGCCCCAAGGCCTTTTTTACATGACCGTGGCGGgggtg
gccgtggagggacggagggagccgcagggggcagggcggagggagaggag
gggcgggagcatCGAGGACTTCGCCTTCCGCTCCTACGTGCAGGTCTGTG
GGCGTGGCGACGTGGTCGGCGACGGCGTGGTCCCCTTGGAAGCGGCCCAT
TTGGAGGGGGCCAAACAAGTGAACCTGCAGAATGTCTTCCACTCCATCAA
CGCGCCTAAGGCGTGGtatgggagcgaggaggtgatCGACTCGtggctgg
gggaggtggagggtaTTCGGTATtga

Synonyms

Publications